View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5853_low_14 (Length: 351)
Name: NF5853_low_14
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5853_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 37850418 - 37850091
Alignment:
| Q |
1 |
ggattacccatgaatgatgatggtgaggaattcaataaattcattagaccttttggtacagaaccatggaagagattgaaagaaatattgacctcaatta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37850418 |
ggattacccatgaatgatgatggtgaggaattcaataaattcattagaccttttggtacagaaccatggaagagattgaaagaaatattgacctcaatta |
37850319 |
T |
|
| Q |
101 |
atgaaacaagaccaccaagggcatctatgcttcctgttaaattgttcaaggatatatctagactttgcaattgctgcagtcctatccagtcaattcctga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37850318 |
atgaaacaagaccaccaagggcatctatgcttcctgttaaattgttcaaggatatatctagactttgcaattgctgcagtcctatccagtcaattcctga |
37850219 |
T |
|
| Q |
201 |
aggaatgtcacctttcaatccattagcactaagattcaatccatagaacagattgcgcaataataaaatcgatcg-aggaattttgcctccaaacaaatt |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37850218 |
aggaatgtcacctttcaatccattagcactaagattcaatccatagaacagattgcgcaataataaaatcgatcgcaggaattttgcctccaaacaaatt |
37850119 |
T |
|
| Q |
300 |
tccaccaagttgtaactcgcggaggttg |
327 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
37850118 |
tccaccaagttgtaactcgcggaggttg |
37850091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 37837039 - 37836719
Alignment:
| Q |
1 |
ggattacccatgaatgatgatggtgaggaattcaataaattcattagaccttttggtacagaaccatggaagagattgaaagaaatattgacctcaatta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
37837039 |
ggattacccatgaatgatgatggtgaggaattcaataacctcattagacctgttggtacagatccattgaagagattgaaagaaatattgacctcaatta |
37836940 |
T |
|
| Q |
101 |
atgaaacaagaccaccaagggcatctatgcttcctgttaaattgttcaaggatatatctagactttgcaattgctgcagtcctatccagtcaattcctga |
200 |
Q |
| |
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||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| | | ||||| | || |
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| T |
37836939 |
atgaaacaagacctccaagagcatctatgcttcctgttaaattgtttaaggatatatctagactttgca------gcagtccgagtaaaccaatttccga |
37836846 |
T |
|
| Q |
201 |
aggaatgtcacctttcaatccattagcactaagattcaatccatagaacagattgcgcaataataaaatcgatcgaggaattttgcctccaaacaaattt |
300 |
Q |
| |
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||||||| ||||| ||||||||||| |||| ||||||| ||||||||||| ||| ||||| | ||||||||||||||||||||||||||||||||| |
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| T |
37836845 |
aggaatgccacctgtcaatccattaccactcagattcagtccatagaacaaattatgcaatgttcccatcgatcgaggaattttgcctccaaacaaattt |
37836746 |
T |
|
| Q |
301 |
ccaccaagttgtaactcgcggaggttg |
327 |
Q |
| |
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|||||||| |||||||||||||||||| |
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|
| T |
37836745 |
ccaccaagatgtaactcgcggaggttg |
37836719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 37842658 - 37842334
Alignment:
| Q |
1 |
ggattacccatgaatgatgatggtgaggaattcaataaattcattagaccttttggtacagaaccatggaagagattgaaagaaatattgacctcaatta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
37842658 |
ggattacccatgaatgatgatggtgaggaattcaataacttcattagacctgttggtacagaaccattgaagagattgtgagaaatattgacctcaatta |
37842559 |
T |
|
| Q |
101 |
atgaaacaagaccaccaagggcatctatgcttcctgttaaattgttcaaggatatatctagactttgcaattgctgcagtcctatccagtcaattcctga |
200 |
Q |
| |
|
|||||||||||| ||||| || ||||||||||| || |||||||||||||||||||| |||||||||| ||| | || | |||| || |
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|
| T |
37842558 |
atgaaacaagacttccaagtgcgtctatgcttcccgtcaaattgttcaaggatatatccagactttgca------gcatttttagtttctgaatttctac |
37842465 |
T |
|
| Q |
201 |
aggaatgtcacctttcaatccattagcactaagattcaatccatagaacagattgcgcaataataaaatcgatcgaggaattttgcctccaaacaaattt |
300 |
Q |
| |
|
||||||| ||||| |||||||||||||||| | |||||| |||||||||| ||| |||||| || |||||||||||||||||| ||||||| ||||||| |
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| T |
37842464 |
aggaatgccacctatcaatccattagcactcaaattcaacccatagaacaaattacgcaatgttacaatcgatcgaggaatttttcctccaagcaaattt |
37842365 |
T |
|
| Q |
301 |
ccaccaagttgtaactcgcggaggttgctaa |
331 |
Q |
| |
|
||||||||||||||||| || ||||| |||| |
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|
| T |
37842364 |
ccaccaagttgtaactcacgaaggtttctaa |
37842334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 5 - 331
Target Start/End: Complemental strand, 37831331 - 37831011
Alignment:
| Q |
5 |
tacccatgaatgatgatggtgaggaattcaataaattcattagaccttttggtacagaaccatggaagagattgaaagaaatattgacctcaattaatga |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||| |||||||||| |||||| ||||| ||| |||| || |
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|
| T |
37831331 |
tacccatgaatgatgatggtgaggaattcagtaacttcattagacctgttggtacagaaccattgaagagattgtaagaaacattgatatcagttaacga |
37831232 |
T |
|
| Q |
105 |
aacaagaccaccaagggcatctatgcttcctgttaaattgttcaaggatatatctagactttgcaattgctgcagtcctatccagtcaattcctgaagga |
204 |
Q |
| |
|
|||||||| |||| |||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||| | ||||| |||||||| |
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|
| T |
37831231 |
aacaagactttcaagagcatatatgcttcctgttaaattgttcaaggatatatccagactttgca------gcagtcctagcttcccaatttctgaagga |
37831138 |
T |
|
| Q |
205 |
atgtcacctttcaatccattagcactaagattcaatccatagaacagattgcgcaataataaaatcgatcgaggaattttgcctccaaacaaatttccac |
304 |
Q |
| |
|
||| ||| | |||||||||| ||| ||||||||||||||||||||||| ||||| | | |||||||||||| |||||||| ||||||||||| |
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| T |
37831137 |
atgctgcctgttaatccattagaactcagattcaatccatagaacagattatgcaatgtccccaaccatcgaggaatttcgcctccaagcaaatttccac |
37831038 |
T |
|
| Q |
305 |
caagttgtaactcgcggaggttgctaa |
331 |
Q |
| |
|
| ||||||||||| || |||||||||| |
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|
| T |
37831037 |
ctagttgtaactcacgaaggttgctaa |
37831011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 28089528 - 28089388
Alignment:
| Q |
1 |
ggattacccatgaatgatgatggtgaggaattcaataaattcattagaccttttggtacagaaccatggaagagattgaaagaaatattgacctcaatta |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||| || ||||||| |||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
28089528 |
ggattgcccatgaatgatgatggtgaggaattcaataaactcattagagctaatggtacaaaaccattgaagagattgtaagaaatattgacctcaatta |
28089429 |
T |
|
| Q |
101 |
atgaaacaagaccaccaagggcatctatgcttcctgttaaa |
141 |
Q |
| |
|
||||||||||| | ||||| ||||| ||| |||||| |||| |
|
|
| T |
28089428 |
atgaaacaagatctccaagagcatcgatgattcctgctaaa |
28089388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 36865786 - 36865462
Alignment:
| Q |
1 |
ggattacccatgaatgatgatggtgaggaattcaataaattcattagaccttttggtacagaaccatggaagagattgaaagaaatattgacctcaatta |
100 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||| | ||||||| | ||||||||||||||| ||| |||||| || |||||||||||||||||| |
|
|
| T |
36865786 |
ggattacccatgaacgatgacggtgaggaattcaataacctaattagacgtgttggtacagaaccattgaaaagattgtaataaatattgacctcaatta |
36865687 |
T |
|
| Q |
101 |
atgaaacaagaccaccaagggcatctatgcttcctgttaaattgttcaaggatatatctagactttgcaattgctgcagtcctatccagtcaattcctga |
200 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||| | ||||||| ||||||||| | ||||| |||| |
|
|
| T |
36865686 |
atgaaacaagaccttcaagagcatctatgcttcctgtcaaattgttcaaggatatatccaagctttgca------gcagtcctagcatcccaatttctga |
36865593 |
T |
|
| Q |
201 |
aggaatgtcacctttcaatccattagcactaagattcaatccatagaacagattgcgcaataataaaatcgatcgaggaattttgcctccaaacaaattt |
300 |
Q |
| |
|
|||||| ||||| ||||||||||| |||| |||||||||||||| |||||||| ||||| | || |||||||||||||||||||| ||| ||||| |
|
|
| T |
36865592 |
aggaataccacctgtcaatccattatcactcagattcaatccataaaacagattatgcaatgttcccattgatcgaggaattttgcctccgaacgaattt |
36865493 |
T |
|
| Q |
301 |
ccaccaagttgtaactcgcggaggttgctaa |
331 |
Q |
| |
|
||||||||||||||||| | |||||||||| |
|
|
| T |
36865492 |
ccaccaagttgtaactcactaaggttgctaa |
36865462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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