View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5853_low_15 (Length: 338)

Name: NF5853_low_15
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5853_low_15
NF5853_low_15
[»] chr7 (2 HSPs)
chr7 (15-244)||(38196951-38197180)
chr7 (239-301)||(38197201-38197263)
[»] chr1 (1 HSPs)
chr1 (41-240)||(19024727-19024926)
[»] chr3 (1 HSPs)
chr3 (15-213)||(25499568-25499763)
[»] chr2 (2 HSPs)
chr2 (44-192)||(34211348-34211496)
chr2 (47-192)||(18978616-18978761)
[»] chr6 (2 HSPs)
chr6 (19-77)||(6509443-6509501)
chr6 (146-244)||(6509562-6509660)
[»] chr5 (1 HSPs)
chr5 (41-131)||(12168432-12168522)
[»] scaffold0094 (1 HSPs)
scaffold0094 (41-114)||(13837-13909)


Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 15 - 244
Target Start/End: Original strand, 38196951 - 38197180
Alignment:
Q  15 tatctgggttagttaacaattctcacccttgcttccctagcatagccagattaaagccaaacatatgtctgaatctcatacctccgtactcctttctcat 114  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38196951 tatctgggttagttaacaattttcacccttgcttccctagcatagccagattaaagccaaacatatgtctgaatcccatacctccgtactcctttctcat 38197050  T
Q  115 agtcaatttgtcccaattaatgcagtttatacctttaccttgacttctattcgacccccaccaaaatgaattaatcattctctgaatttcctcccccaaa 214  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38197051 agtcaatttgtcccaattaatccagtttatacctttaccttgacttctagtcgacccccaccaaaatgaattaatcattctctgaatttcctcccccaaa 38197150  T
Q  215 gtagttggtaacagaaaagtgctcatacaa 244  Q
    ||||||||||||||||||||||||||||||    
T  38197151 gtagttggtaacagaaaagtgctcatacaa 38197180  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 239 - 301
Target Start/End: Complemental strand, 38197263 - 38197201
Alignment:
Q  239 atacaacaatggtcaagtaagcatttatccaaagcaggaagagaagtgttaattaaatcagtt 301  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  38197263 atacaacaatggtcgggtaagcatttatccaaagcaggaagagaagtgttaattaaatcagtt 38197201  T

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Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 41 - 240
Target Start/End: Original strand, 19024727 - 19024926
Alignment:
Q  41 ccttgcttccctagcatagccagattaaagccaaacatatgtctgaatctcatacctccgtactcctttctcatagtcaatttgtcccaattaatgcagt 140  Q
    ||||||||||||||||||||||  ||||||||||| |  ||||| || | |||||||||||||||||||| ||| || | |||||||||| | |  || |    
T  19024727 ccttgcttccctagcatagccaagttaaagccaaataagtgtctaaaccccatacctccgtactcctttcgcattgtgagtttgtcccaaatgagccaat 19024826  T
Q  141 ttatacctttaccttgacttctattcgacccccaccaaaatgaattaatcattctctgaatttcctcccccaaagtagttggtaacagaaaagtgctcat 240  Q
    | || ||| ||||||| | | ||||| | ||||||||||| ||||||||||| ||||| || || || |||||||| ||||||| |||||||||||||||    
T  19024827 taatccctctaccttgccatatattcaaaccccaccaaaaagaattaatcatcctctggatctcttctcccaaagttgttggtagcagaaaagtgctcat 19024926  T

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Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 15 - 213
Target Start/End: Complemental strand, 25499763 - 25499568
Alignment:
Q  15 tatctgggttagttaacaattctcacccttgcttccctagcatagccagattaaagccaaacatatgtctgaatctcatacctccgtactcctttctcat 114  Q
    ||||||||| |||||| |  | |||||||||||||||||||||||||| |||||| |||||||  |||||    | ||| ||||| |||||||| | |||    
T  25499763 tatctgggtgagttaaaagctttcacccttgcttccctagcatagccaaattaaaaccaaacaagtgtcta---cccatgcctccatactccttacgcat 25499667  T
Q  115 agtcaatttgtcccaattaatgcagtttatacctttaccttgacttctattcgacccccaccaaaatgaattaatcattctctgaatttcctcccccaa 213  Q
     || ||||||||||||  ||  || || |||||||||||||| || ||||| || ||||||||||| |||||||||||||| ||||| ||||| |||||    
T  25499666 tgttaatttgtcccaagaaagccaattgatacctttaccttgcctcctatttgatccccaccaaaaagaattaatcattctttgaatctcctctcccaa 25499568  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 192
Target Start/End: Complemental strand, 34211496 - 34211348
Alignment:
Q  44 tgcttccctagcatagccagattaaagccaaacatatgtctgaatctcatacctccgtactcctttctcatagtcaatttgtcccaattaatgcagttta 143  Q
    ||||||||||||||||||| |||||||| ||| |  ||||| || | |||||| || |||||||| ||||| || ||||| |||||    |  || || |    
T  34211496 tgcttccctagcatagccaaattaaagcaaaaaaagtgtctaaaccccataccaccatactccttcctcattgttaatttatcccatcggagccaattga 34211397  T
Q  144 tacctttaccttgacttctattcgacccccaccaaaatgaattaatcat 192  Q
    | ||| ||||||| ||||||||||| ||||||||||| |||||||||||    
T  34211396 tccctctaccttgccttctattcgaaccccaccaaaaggaattaatcat 34211348  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 192
Target Start/End: Original strand, 18978616 - 18978761
Alignment:
Q  47 ttccctagcatagccagattaaagccaaacatatgtctgaatctcatacctccgtactcctttctcatagtcaatttgtcccaattaatgcagtttatac 146  Q
    |||||||||||||||| |||||||| ||| |  ||||| |||| ||| || || |||||||| ||||| || ||||| |||||    |  || || || |    
T  18978616 ttccctagcatagccaaattaaagctaaaaaagtgtctaaatcccattccaccatactccttcctcattgttaatttatcccatcggagccaattgatcc 18978715  T
Q  147 ctttaccttgacttctattcgacccccaccaaaatgaattaatcat 192  Q
    || ||||||| ||||||||||| ||||||||||| |||||||||||    
T  18978716 ctctaccttgccttctattcgaaccccaccaaaaggaattaatcat 18978761  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 6509443 - 6509501
Alignment:
Q  19 tgggttagttaacaattctcacccttgcttccctagcatagccagattaaagccaaaca 77  Q
    ||||| ||||||||||| ||||||||||||||||||| ||| || ||||||||||||||    
T  6509443 tgggtgagttaacaattttcacccttgcttccctagcgtagacaaattaaagccaaaca 6509501  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 244
Target Start/End: Original strand, 6509562 - 6509660
Alignment:
Q  146 cctttaccttgacttctattcgacccccaccaaaatgaattaatcattctctgaatttcctcccccaaagtagttggtaacagaaaagtgctcatacaa 244  Q
    ||||| ||||| || |||||| | |||||||| || || ||||||||| | ||||| ||||||||||| || |||||||| |  |||||||||||||||    
T  6509562 cctttgccttgcctcctattcaatccccaccagaaagagttaatcattatttgaatctcctcccccaatgttgttggtaataagaaagtgctcatacaa 6509660  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 131
Target Start/End: Complemental strand, 12168522 - 12168432
Alignment:
Q  41 ccttgcttccctagcatagccagattaaagccaaacatatgtctgaatctcatacctccgtactcctttctcatagtcaatttgtcccaat 131  Q
    |||||||||||||||||||| |  ||||||||||| |  ||||| || | ||||||||| |||||||| ||||| || | |||||||||||    
T  12168522 ccttgcttccctagcatagctaagttaaagccaaaaaagtgtctaaaacccatacctccatactccttcctcattgttagtttgtcccaat 12168432  T

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Target: scaffold0094 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 13909 - 13837
Alignment:
Q  41 ccttgcttccctagcatagccagattaaagccaaacatatgtctgaatctcatacctccgtactcctttctcat 114  Q
    |||||||||||||||||||||| |||||||||||| |  ||| |||| | ||||||||| |||||||| |||||    
T  13909 ccttgcttccctagcatagccaaattaaagccaaa-aagtgtatgaaacccatacctccatactccttcctcat 13837  T

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