View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5853_low_17 (Length: 319)

Name: NF5853_low_17
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5853_low_17
NF5853_low_17
[»] chr5 (5 HSPs)
chr5 (203-303)||(42723341-42723441)
chr5 (40-98)||(42723280-42723338)
chr5 (240-274)||(18695321-18695355)
chr5 (244-274)||(24463269-24463299)
chr5 (238-274)||(16143393-16143429)
[»] chr4 (4 HSPs)
chr4 (240-274)||(34995323-34995357)
chr4 (240-274)||(47998597-47998631)
chr4 (238-274)||(28676173-28676209)
chr4 (238-274)||(32365688-32365724)
[»] chr1 (4 HSPs)
chr1 (238-269)||(4637944-4637975)
chr1 (240-274)||(21433435-21433469)
chr1 (238-274)||(40596075-40596111)
chr1 (238-274)||(41507215-41507251)
[»] scaffold0184 (1 HSPs)
scaffold0184 (240-274)||(16628-16662)
[»] scaffold0078 (1 HSPs)
scaffold0078 (240-274)||(56182-56216)
[»] scaffold0049 (1 HSPs)
scaffold0049 (240-274)||(72203-72237)
[»] chr8 (3 HSPs)
chr8 (240-274)||(10644836-10644870)
chr8 (240-274)||(35937546-35937580)
chr8 (238-274)||(1370306-1370342)
[»] chr6 (4 HSPs)
chr6 (240-274)||(1376367-1376401)
chr6 (240-274)||(1384115-1384149)
chr6 (240-274)||(25127867-25127901)
chr6 (240-276)||(3552188-3552224)
[»] chr3 (4 HSPs)
chr3 (240-274)||(29573390-29573424)
chr3 (240-269)||(27162503-27162532)
chr3 (240-276)||(32187142-32187178)
chr3 (238-274)||(47683804-47683840)
[»] chr2 (4 HSPs)
chr2 (240-274)||(5031926-5031960)
chr2 (238-274)||(305004-305040)
chr2 (238-274)||(7121393-7121429)
chr2 (238-274)||(29795450-29795486)
[»] scaffold0592 (1 HSPs)
scaffold0592 (241-274)||(8342-8375)
[»] chr7 (2 HSPs)
chr7 (240-269)||(1471325-1471354)
chr7 (244-288)||(25940670-25940715)


Alignment Details
Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 203 - 303
Target Start/End: Original strand, 42723341 - 42723441
Alignment:
Q  203 ttgatgttgtggaccaaacatatcggcttagattaagaaagttgttacaaaatggttgtacaaatataattttctcaacaaaatatcacgctcattgatc 302  Q
    ||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  42723341 ttgatgttgtggaccgaacatatcggcttagattaaaaaagttattacaaaatggttgtacaaatataattttctcaacaaaatatcacgttcattgatc 42723440  T
Q  303 g 303  Q
    |    
T  42723441 g 42723441  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 42723280 - 42723338
Alignment:
Q  40 ttgtgtcaaactctcctaatggtgcaagaaaataagataattcaaatccacaatagtag 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42723280 ttgtgtcaaactctcctaatggtgcaagaaaataagataattcaaatccacaatagtag 42723338  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 274
Target Start/End: Complemental strand, 18695355 - 18695321
Alignment:
Q  240 aaagttgttacaaaatggttgtacaaatataattt 274  Q
    |||||||||||||||||||||||||||||| ||||    
T  18695355 aaagttgttacaaaatggttgtacaaatatcattt 18695321  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 274
Target Start/End: Original strand, 24463269 - 24463299
Alignment:
Q  244 ttgttacaaaatggttgtacaaatataattt 274  Q
    |||||||||||||||||||||||||||||||    
T  24463269 ttgttacaaaatggttgtacaaatataattt 24463299  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 16143429 - 16143393
Alignment:
Q  238 agaaagttgttacaaaatggttgtacaaatataattt 274  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  16143429 agaaagttgtcacaaaatggttgtacaaatatcattt 16143393  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 274
Target Start/End: Complemental strand, 34995357 - 34995323
Alignment:
Q  240 aaagttgttacaaaatggttgtacaaatataattt 274  Q
    |||||||||||||||||||||||||||||||||||    
T  34995357 aaagttgttacaaaatggttgtacaaatataattt 34995323  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 274
Target Start/End: Complemental strand, 47998631 - 47998597
Alignment:
Q  240 aaagttgttacaaaatggttgtacaaatataattt 274  Q
    |||||||||||||||||||||||||||||| ||||    
T  47998631 aaagttgttacaaaatggttgtacaaatatcattt 47998597  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 28676173 - 28676209
Alignment:
Q  238 agaaagttgttacaaaatggttgtacaaatataattt 274  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  28676173 agaaagttgtcacaaaatggttgtacaaatatcattt 28676209  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 32365688 - 32365724
Alignment:
Q  238 agaaagttgttacaaaatggttgtacaaatataattt 274  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  32365688 agaaagttgtcacaaaatggttgtacaaatatcattt 32365724  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 269
Target Start/End: Complemental strand, 4637975 - 4637944
Alignment:
Q  238 agaaagttgttacaaaatggttgtacaaatat 269  Q
    ||||||||||||||||||||||||||||||||    
T  4637975 agaaagttgttacaaaatggttgtacaaatat 4637944  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 274
Target Start/End: Original strand, 21433435 - 21433469
Alignment:
Q  240 aaagttgttacaaaatggttgtacaaatataattt 274  Q
    |||||||||||||||||||||||||||||| ||||    
T  21433435 aaagttgttacaaaatggttgtacaaatatcattt 21433469  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 40596075 - 40596111
Alignment:
Q  238 agaaagttgttacaaaatggttgtacaaatataattt 274  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  40596075 agaaagttgtcacaaaatggttgtacaaatatcattt 40596111  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 41507215 - 41507251
Alignment:
Q  238 agaaagttgttacaaaatggttgtacaaatataattt 274  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  41507215 agaaagttgtcacaaaatggttgtacaaatatcattt 41507251  T

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Target: scaffold0184 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 274
Target Start/End: Original strand, 16628 - 16662
Alignment:
Q  240 aaagttgttacaaaatggttgtacaaatataattt 274  Q
    |||||||||||||||||||||||||||||| ||||    
T  16628 aaagttgttacaaaatggttgtacaaatatcattt 16662  T

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Target: scaffold0078 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 274
Target Start/End: Complemental strand, 56216 - 56182
Alignment:
Q  240 aaagttgttacaaaatggttgtacaaatataattt 274  Q
    |||||||||||||||||||||||||||||| ||||    
T  56216 aaagttgttacaaaatggttgtacaaatatcattt 56182  T

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Target: scaffold0049 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 274
Target Start/End: Original strand, 72203 - 72237
Alignment:
Q  240 aaagttgttacaaaatggttgtacaaatataattt 274  Q
    |||||||||||||||||||||||||||||| ||||    
T  72203 aaagttgttacaaaatggttgtacaaatatcattt 72237  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 274
Target Start/End: Original strand, 10644836 - 10644870
Alignment:
Q  240 aaagttgttacaaaatggttgtacaaatataattt 274  Q
    |||||||||||||||||||||||||||||| ||||    
T  10644836 aaagttgttacaaaatggttgtacaaatatcattt 10644870  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 274
Target Start/End: Original strand, 35937546 - 35937580
Alignment:
Q  240 aaagttgttacaaaatggttgtacaaatataattt 274  Q
    |||||||||||||||||||||||||||||| ||||    
T  35937546 aaagttgttacaaaatggttgtacaaatatcattt 35937580  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 1370306 - 1370342
Alignment:
Q  238 agaaagttgttacaaaatggttgtacaaatataattt 274  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  1370306 agaaagttgttacaaagtggttgtacaaatatcattt 1370342  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 274
Target Start/End: Complemental strand, 1376401 - 1376367
Alignment:
Q  240 aaagttgttacaaaatggttgtacaaatataattt 274  Q
    |||||||||| ||||||||||||||||||||||||    
T  1376401 aaagttgttagaaaatggttgtacaaatataattt 1376367  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 274
Target Start/End: Complemental strand, 1384149 - 1384115
Alignment:
Q  240 aaagttgttacaaaatggttgtacaaatataattt 274  Q
    |||||||||| ||||||||||||||||||||||||    
T  1384149 aaagttgttagaaaatggttgtacaaatataattt 1384115  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 274
Target Start/End: Original strand, 25127867 - 25127901
Alignment:
Q  240 aaagttgttacaaaatggttgtacaaatataattt 274  Q
    |||||||||||||||||||||||||||||| ||||    
T  25127867 aaagttgttacaaaatggttgtacaaatatcattt 25127901  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 276
Target Start/End: Original strand, 3552188 - 3552224
Alignment:
Q  240 aaagttgttacaaaatggttgtacaaatataattttc 276  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  3552188 aaagttgttaaaaaatggttgtacaaatatcattttc 3552224  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 274
Target Start/End: Original strand, 29573390 - 29573424
Alignment:
Q  240 aaagttgttacaaaatggttgtacaaatataattt 274  Q
    |||||||||||||||||||||||||||||| ||||    
T  29573390 aaagttgttacaaaatggttgtacaaatatcattt 29573424  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 269
Target Start/End: Original strand, 27162503 - 27162532
Alignment:
Q  240 aaagttgttacaaaatggttgtacaaatat 269  Q
    ||||||||||||||||||||||||||||||    
T  27162503 aaagttgttacaaaatggttgtacaaatat 27162532  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 276
Target Start/End: Complemental strand, 32187178 - 32187142
Alignment:
Q  240 aaagttgttacaaaatggttgtacaaatataattttc 276  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  32187178 aaagttgtcacaaaatggttgtacaaatatcattttc 32187142  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 47683840 - 47683804
Alignment:
Q  238 agaaagttgttacaaaatggttgtacaaatataattt 274  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  47683840 agaaagttgtcacaaaatggttgtacaaatatcattt 47683804  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 274
Target Start/End: Complemental strand, 5031960 - 5031926
Alignment:
Q  240 aaagttgttacaaaatggttgtacaaatataattt 274  Q
    |||||||||||||||||||||||||||||| ||||    
T  5031960 aaagttgttacaaaatggttgtacaaatatcattt 5031926  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 305004 - 305040
Alignment:
Q  238 agaaagttgttacaaaatggttgtacaaatataattt 274  Q
    ||||||||||  |||||||||||||||||||||||||    
T  305004 agaaagttgtaccaaaatggttgtacaaatataattt 305040  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 7121429 - 7121393
Alignment:
Q  238 agaaagttgttacaaaatggttgtacaaatataattt 274  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  7121429 agaaagttgttacaaaatggttatacaaatatcattt 7121393  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 29795486 - 29795450
Alignment:
Q  238 agaaagttgttacaaaatggttgtacaaatataattt 274  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  29795486 agaaagttgtcacaaaatggttgtacaaatatcattt 29795450  T

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Target: scaffold0592 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 274
Target Start/End: Original strand, 8342 - 8375
Alignment:
Q  241 aagttgttacaaaatggttgtacaaatataattt 274  Q
    ||||||| ||||||||||||||||||||||||||    
T  8342 aagttgtcacaaaatggttgtacaaatataattt 8375  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 269
Target Start/End: Original strand, 1471325 - 1471354
Alignment:
Q  240 aaagttgttacaaaatggttgtacaaatat 269  Q
    ||||||||||||||||||||||||||||||    
T  1471325 aaagttgttacaaaatggttgtacaaatat 1471354  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 25940670 - 25940715
Alignment:
Q  244 ttgttacaaaatggttgtacaaatataattt-tctcaacaaaatat 288  Q
    |||||||||||||||||||||||||| |||| |||||| |||||||    
T  25940670 ttgttacaaaatggttgtacaaatatcatttctctcaagaaaatat 25940715  T

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