View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5853_low_2 (Length: 647)
Name: NF5853_low_2
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5853_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 590; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 1 - 640
Target Start/End: Original strand, 42474938 - 42475570
Alignment:
| Q |
1 |
agtacagttgaatgttcatttctgacagagtacaacttacctatggaatattacaagtgcatcattacagtcaaatattcatcatccttagttttggaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42474938 |
agtacagttgaatgttcatttctgacagagtacaacttacctatggaatattacaagtgcatcattacagtcaaatattcatcatccttagttttggaaa |
42475037 |
T |
|
| Q |
101 |
tgaaaaatggtcaaagttagaggttaaacttgaactacgaatatttgggtgcgtgcatgtatttatttaaacgtaatacacgagtcatattaaatgaggg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42475038 |
tgaaaaatggtcaaagttagaggttaaacttgaactacgaatatttgggtgcgtgcatgtatttatttaaacgtaatacacgagtcatattaaatgaggg |
42475137 |
T |
|
| Q |
201 |
cactagtttgttgtgagaatgggtgaagtgaccatcatagtccatggacaaagtcctgtgtgtgcattagattccataatcttgattaaagttaaatact |
300 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42475138 |
cacttgtttgttgtgagaatgggtgaagtgaccatcatag-------acaaagtcctgtgtgtgcattagaatccataatcttgattaaagttaaatact |
42475230 |
T |
|
| Q |
301 |
aatttatagaaacttgatattttttatgaaaagttgggtgtgaaaattgtcaactgtaagctttgcattataccttgttacctaactcatattacaactg |
400 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42475231 |
aatttatacaaacttgatattttttatgaaaagttgggtgtgaaaattgtcaactgtaagctttgcattataccttgttacctaactcatattacaactg |
42475330 |
T |
|
| Q |
401 |
gattttacttgcaaaatctgtttgtaagtgaatcattttgatagaatgcccctgggagctttgataaaaacccaaatacctccattcctgatagctcaaa |
500 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
42475331 |
gattttacttgcaaaacctgtttgtaagtgaatcattttgatagaatgcccctgggagctttgataaaaacccaaatacctccattcctgatagctcgaa |
42475430 |
T |
|
| Q |
501 |
aagctagttgggacatgttgcctatttttataatgcattaaaagctcagtgctgaaccgatatatgattgctaaatgattatttagctgtttgttaaaca |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42475431 |
aagctagttgggacatgttgcctatttttataatgcattaaaagctcagtgctgaaccgatatatgattgctaaatgattatttagctgtttgttaaaca |
42475530 |
T |
|
| Q |
601 |
tgttgcctgtttgatcatttgtttgataaatatgatgatg |
640 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42475531 |
tgttgcctgtttgatcatttgtttgataaatatgttgatg |
42475570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 42480439 - 42480781
Alignment:
| Q |
1 |
agtacagttgaatgttcatttctgacagagtacaacttacctatggaatattacaagtgcatcattacagtcaaatattcatcatccttagttttggaaa |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
42480439 |
agtacagttgaatgtgcatttctgacagagtacaattttgctatggaatattaaaagtgcatcattacagtcaaatgttcatgatccttagttttggaaa |
42480538 |
T |
|
| Q |
101 |
tgaaaaatggtcaaagttagaggttaaacttgaactac-gaatatttgggtgcgtgcatgtatttatttaaacgtaatacacgagtcatattaaatgagg |
199 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||| | ||| ||| |||||| ||| |||||||||| || | |||||| |||||||||||| ||| |
|
|
| T |
42480539 |
tgaaaaatggtcagagttagaggttaaacttaaactacagtata-ttgtgtgcgttcatatatttatttacacatgatacactagtcatattaaacgaga |
42480637 |
T |
|
| Q |
200 |
gcactagtttgttgtgagaatgggtgaagtgaccatcatagtccatggacaaagtcctgtgtgtgcattagattccataatcttgattaaagttaaatac |
299 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||| |||||| ||||||||||| ||| |||||||||| |||| ||||||||||| |
|
|
| T |
42480638 |
gcactagtttgttgtgaaaattggtgaagtgaccatcatag---------aaagtcatgtgtgtgcatcagaatccataatctcgattgaagttaaatac |
42480728 |
T |
|
| Q |
300 |
taatttatagaaacttgatat--tttttatgaaaagttgggtgtgaaaattgt |
350 |
Q |
| |
|
||||||||| |||||| |||| ||||||| ||||||||||||||||| |||| |
|
|
| T |
42480729 |
taatttatacaaacttaatattgtttttataaaaagttgggtgtgaaagttgt |
42480781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 561 - 617
Target Start/End: Original strand, 42480885 - 42480941
Alignment:
| Q |
561 |
tatatgattgctaaatgattatttagctgtttgttaaacatgttgcctgtttgatca |
617 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42480885 |
tatatgattgctaaatcgttatttagctgtttgttaaacatgttgcctgtttgatca |
42480941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University