View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5853_low_20 (Length: 307)
Name: NF5853_low_20
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5853_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 10602917 - 10602627
Alignment:
| Q |
1 |
tgtttccttctaagtctatggttttgagctcatagcactttgtcaagtttataggatattccccaaccaacgagttgttgagtagaaggagataacttaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10602917 |
tgtttccttctaagtctatggttttgagctcatagcactttgtcaagtttataggaaattccccaaccaacgagttgttgagtagaaggagataccttaa |
10602818 |
T |
|
| Q |
101 |
ttttgacaaacgacccaattcttgtggaatgtttccattgaagctgttatttccaaggttgaggtatctcatttgagagagattgccaatatacggagat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10602817 |
ttttgacaaacgacccaattcttgtggaatgtttccattgaagctgttatttccaaggttgaggtatctcatttgagagagattgccaatatacggagat |
10602718 |
T |
|
| Q |
201 |
attgatccatgcaatttgtaccctttcaacttcaagtttgtaactctttgatgcttgggaccgcatatgattccattccatttgcaaaagt |
291 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10602717 |
attgatccatgcaatttgtacccttgcaacttcaagtttgtaactctttgatgcttgggaccgcatatgattccattccatttgcaaaagt |
10602627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 10599257 - 10598963
Alignment:
| Q |
1 |
tgtttccttctaagtctatggttttgagctcatagcactttgtcaagtttataggatattccccaaccaacgagttgttgagtagaaggagataacttaa |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
10599257 |
tgtttccttccaagtctatggttttgagctcatagcactttgtcaagtttataggaaattccccaaccaacgagttgttgagtagaaggagataccctaa |
10599158 |
T |
|
| Q |
101 |
ttttgacaaacgacccaattcttgtggaatgtttccattgaagctgttatttccaaggttgaggtatctcatt----tgagagagattgccaatatacgg |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||| | |||||||||||||||||||| || |
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| T |
10599157 |
ttttgacaaacgacccaattcttgtggaatgtttccattgtagctgttgtttccaatgttgaggtatctcactcaaatgagagagattgccaatatatgg |
10599058 |
T |
|
| Q |
197 |
agatattgatccatgcaatttgtaccctttcaacttcaagtttgtaactctttgatgcttgggaccgcatatgattccattccatttgcaaaagt |
291 |
Q |
| |
|
|||||| ||||||||||| ||||| | | |||| |||| |||||||||||||||||||||||| |||||||||||||| ||| |||||||||| |
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| T |
10599057 |
agatatggatccatgcaacttgtaacttggcaacctcaactttgtaactctttgatgcttgggattgcatatgattccatgccaattgcaaaagt |
10598963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 10590472 - 10590762
Alignment:
| Q |
1 |
tgtttccttctaagtctatggttttgagctcatagcactttgtcaagtttataggatattccccaaccaacgagttgttgagtagaaggagataacttaa |
100 |
Q |
| |
|
|||||||||||||||||| | ||||||||||| |||| ||||||||||||| |||| |||| ||||||| ||||||||| |||||| | ||| ||||| |
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| T |
10590472 |
tgtttccttctaagtctacgcttttgagctcagagcagtttgtcaagtttaaaggaaattctccaaccagagagttgttggatagaagaaaatatcttaa |
10590571 |
T |
|
| Q |
101 |
ttttgacaaacgacccaattcttgtggaatgtttccattgaagctgttatttccaaggttgaggtatctcatttgagagagattgccaatatacggagat |
200 |
Q |
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| |||||||||||||||| ||||||||||||||||||||||| |||| ||| ||||||| || |||||| |||| ||||| |||||||| |||||| |
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| T |
10590572 |
tcttgacaaacgacccaactcttgtggaatgtttccattgaaattgttgttttcaaggttaagaaatctcaaacgagaaagattaccaatatatggagat |
10590671 |
T |
|
| Q |
201 |
attgatccatgcaatttgtaccctttcaacttcaagtttgtaactctttgatgcttgggaccgcatatgattccattccatttgcaaaagt |
291 |
Q |
| |
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|| ||||||||||| ||||| ||| || |||||| || |||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
10590672 |
atggatccatgcaacttgtatcctgacagcttcaacttggtaactctttgatgcttgggactgcatatgattccattccagttgcaaaagt |
10590762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 10579171 - 10578881
Alignment:
| Q |
1 |
tgtttccttctaagtctatggttttgagctcatagcactttgtcaagtttataggatattccccaaccaacgagttgttgagtagaaggagataacttaa |
100 |
Q |
| |
|
|||||||||||||||||| | ||||||||||| |||| ||||||||| ||| |||| |||| ||||||| ||||||||| |||||| | ||| ||||| |
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| T |
10579171 |
tgtttccttctaagtctacgcttttgagctcagagcagtttgtcaaggttaaaggaaattctccaaccagagagttgttggatagaagaaaatatcttaa |
10579072 |
T |
|
| Q |
101 |
ttttgacaaacgacccaattcttgtggaatgtttccattgaagctgttatttccaaggttgaggtatctcatttgagagagattgccaatatacggagat |
200 |
Q |
| |
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| ||| ||||||||| |||||||||||||||||| | ||||| || ||||||||||||||| |||||| |||| |||||||||| ||| |||||| |
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| T |
10579071 |
tcgtgataaacgacccgtttcttgtggaatgtttccgtagaagccattgtttccaaggttgaggaatctcaaacgagaaagattgccaacatatggagat |
10578972 |
T |
|
| Q |
201 |
attgatccatgcaatttgtaccctttcaacttcaagtttgtaactctttgatgcttgggaccgcatatgattccattccatttgcaaaagt |
291 |
Q |
| |
|
|| ||||||||||| || || ||| || ||| || || |||| ||||||||||||||||| ||||| ||||||| |||||||||||||| |
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| T |
10578971 |
atggatccatgcaacttttatcctggcagctttaacttggtaaatctttgatgcttgggactgcatacgattccaggccatttgcaaaagt |
10578881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 106 - 291
Target Start/End: Original strand, 9838478 - 9838663
Alignment:
| Q |
106 |
acaaacgacccaattcttgtggaatgtttccattgaagctgttatttccaaggttgaggtatctcatttgagagagattgccaatatacggagatattga |
205 |
Q |
| |
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|||| ||||| | ||| |||||||| |||||| |||| | || ||| |||||||| || ||| || |||||||||||||||| || || || || || |
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| T |
9838478 |
acaaccgaccgagttcctgtggaatttttccaaagaaggtattgtttttaaggttgatgtttcttatacgagagagattgccaatgtaaggtgacatgga |
9838577 |
T |
|
| Q |
206 |
tccatgcaatttgtaccctttcaacttcaagtttgtaactctttgatgcttgggaccgcatatgattccattccatttgcaaaagt |
291 |
Q |
| |
|
||||||||| ||||| |||| || ||||| |||||||||||||||||| |||| |||| ||||||||| ||| ||||| |||| |
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| T |
9838578 |
tccatgcaacttgtatccttgtaagttcaattttgtaactctttgatgcatggggttgcatgtgattccatgccagttgcagaagt |
9838663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 258
Target Start/End: Complemental strand, 10593745 - 10593666
Alignment:
| Q |
179 |
gagattgccaatatacggagatattgatccatgcaatttgtaccctttcaacttcaagtttgtaactctttgatgcttgg |
258 |
Q |
| |
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||||||||||||||| |||||||| |||||||||| ||||| |||| ||| | || |||||||||||||||||||||| |
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| T |
10593745 |
gagattgccaatataaggagatatatatccatgcaacttgtatccttgtaacattaattttgtaactctttgatgcttgg |
10593666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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