View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5853_low_22 (Length: 262)
Name: NF5853_low_22
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5853_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 247
Target Start/End: Original strand, 42706382 - 42706620
Alignment:
| Q |
10 |
aatattatcatgatcatttgttaaaactcataaagagggggaaaatacatttagaacaattcaaacannnnnnnnnatgaaagcatgttgttaaggtaa- |
108 |
Q |
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| T |
42706382 |
aatattatcatgatcatttgttaaaactcataaagagggggaaaatacatttagaacaattcaaacatttttttttatgaaagcatgttgttaaggtaaa |
42706481 |
T |
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| Q |
109 |
gaataaaagatagttaaagtagttagggttatttaggctagttagttggtttagaaggtatatcgattagataaatatgagaaacaaggatagatgaatt |
208 |
Q |
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| T |
42706482 |
gaataaaagatagttaaagtagttagggttatttaggctagttagttggtttagaaggtatatcgattagataaatatgagaaacaaggatagatgaatt |
42706581 |
T |
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| Q |
209 |
cgttttgcaaacttgacagttctatatgaaaggagaaat |
247 |
Q |
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| T |
42706582 |
cgttttgcaaacttgacagttctatatgaaaggagaaat |
42706620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 93 - 247
Target Start/End: Original strand, 42712438 - 42712589
Alignment:
| Q |
93 |
catgttgttaaggtaa-gaataaaagatagttaaagtagttagggttatttaggctagttagttggtttagaaggtatatcgattagataaatatgagaa |
191 |
Q |
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|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42712438 |
catgttgttaaggtaaagaataa----tagttaaagtagttagggttatttaggctagttagttggtttagaaggtatatcgattagataaataagagaa |
42712533 |
T |
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| Q |
192 |
acaaggatagatgaattcgttttgcaaacttgacagttctatatgaaaggagaaat |
247 |
Q |
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| T |
42712534 |
acaaggatagatgaattcgttttgcaaacttgacagttctatatgaaaggagaaat |
42712589 |
T |
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