View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5853_low_23 (Length: 259)
Name: NF5853_low_23
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5853_low_23 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 6 - 259
Target Start/End: Original strand, 42654594 - 42654847
Alignment:
| Q |
6 |
tgtccaataatatgaaacaagtactattctcattcatccattaacctaagatgaaccgtttgaggtgtcaaaacttttctttctaaccaagagacaagtg |
105 |
Q |
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| T |
42654594 |
tgtccaacaatatgaaacaagtactattctcattcatccattaacctaagatgaaccgtttgaggtgtcaaaacttttctttctaaccaagagacaagtg |
42654693 |
T |
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| Q |
106 |
atttttgaaggattggaatttgtgttatcaagacaacatactaagaaatcaggcctatgaagtccaacatgtagcctatcctttcccacaaccattgcag |
205 |
Q |
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| T |
42654694 |
atttttgaaggattggaatttgtgttatcaagacaacatactaagaaatcaggcctatgaagtccaacatgtagcctatcctttcccacaaccattgcag |
42654793 |
T |
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| Q |
206 |
atgcatcaagcaaaacatgccaatagttcctatgagcctcagaaaccccatgca |
259 |
Q |
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| T |
42654794 |
atgcatcaagcaaaacatgccaatagttcctatgagcctcagaaacccaatgca |
42654847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 68 - 259
Target Start/End: Complemental strand, 43053322 - 43053131
Alignment:
| Q |
68 |
aggtgtcaaaacttttctttctaaccaagagacaagtgatttttgaaggattggaatttgtgttatcaagacaacatactaagaaatcaggcctatgaag |
167 |
Q |
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|||||||||||||||||||||| | ||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43053322 |
aggtgtcaaaacttttctttctgatcaatagacaagtgattcttgaaggattggaatttgtgttatcaagacaacaaactaagaaatcaggcctatgaag |
43053223 |
T |
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| Q |
168 |
tccaacatgtagcctatcctttcccacaaccattgcagatgcatcaagcaaaacatgccaatagttcctatgagcctcagaaaccccatgca |
259 |
Q |
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| T |
43053222 |
tccaacatgtagcctatcctttcccacaaccattgcagatgcatcaagcaaaacatgccaatagttcctacgagcctcagaaatccaatgca |
43053131 |
T |
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