View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5853_low_3 (Length: 550)
Name: NF5853_low_3
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5853_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 516; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 23 - 546
Target Start/End: Complemental strand, 42655632 - 42655109
Alignment:
| Q |
23 |
tcaatccaaacatgcacgtaatgttacacttacacgttccgttttgaaactaacaataaacttataattgctacctaaacagaagccaaatgtggtgatt |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42655632 |
tcaatccaaacatgcacgtaatgttacacttacacgttccgttttgaaactaacaataaacttataattgctacctaaacagaagccaaatgtggtgatt |
42655533 |
T |
|
| Q |
123 |
cctgctcatatcatagctgaagcaatatcaactatccgcgacattgacctaagatggtcaggtccaatcacacagaaagaaatggaatatgtagaagaat |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42655532 |
cctgctcatatcatagctgaagcaatatcaactatccgcgacattgacctaagatggtcaggtccaatcacacagaaagaaatggaatatgtagaggaat |
42655433 |
T |
|
| Q |
223 |
atgtcctagcaaagtatcctgaatatgcaaatctaattgaaggagatggaagtggtatagacatgtcaagttttatcatcaatgaggagccttcggaatt |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42655432 |
atgtcctagcaaagtatcctgaatatgcaaatctaattgaaggagatggaagtggtatagacatgtcaagttttatcatcaatgaggagccttcggaatt |
42655333 |
T |
|
| Q |
323 |
accaatgtcagatgatagaagaaagtcaccaagatcgccttcttttggaagcaaccttcctgagatggatagaacacagttagagccatcaagactactt |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42655332 |
accaatgtcagatgatagaagaaagtcaccaagatcgccttcttttggaagcaaccttcctgagatggatagaacacagttagagccatcaagactactt |
42655233 |
T |
|
| Q |
423 |
gatattctcaacaaaaaatcctcctttcctggaagtttcatctcgataccggaaattcaagctcaaaataaggttttgaaacattgtggtttgcctgatg |
522 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42655232 |
gatattctcaacaaaaaatcctcctttcctggaagtttcatctcgataccggaaattcaagctcaaaataaggttttgaaacattgtggtttgcctgatg |
42655133 |
T |
|
| Q |
523 |
atgagtatttggttcttctcactc |
546 |
Q |
| |
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||||||||||||||||| |||||| |
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| T |
42655132 |
atgagtatttggttcttttcactc |
42655109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 64 - 538
Target Start/End: Original strand, 43052390 - 43052867
Alignment:
| Q |
64 |
ttttgaaactaacaataaacttataattgctacctaaacagaagccaaatgtggtgattcctgctcatatcatagctgaagcaatatcaactatccgcga |
163 |
Q |
| |
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||||||||||||||| | |||| |||||| ||| ||| ||||| || |||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43052390 |
ttttgaaactaacaaaagacttgtaattggtacataagcagaaagcacatgtggagattcctgctcatatcatagctgaagcaatatcaacaatccgcgg |
43052489 |
T |
|
| Q |
164 |
cattgacctaagatggtcaggtccaatcacacagaaagaaatggaatatgtagaagaatatgtcctagcaaagtatcctgaatatgcaaatctaattgaa |
263 |
Q |
| |
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|||| ||| ||||||||||||||||| |||| |||||||||||||| |||| || |||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
43052490 |
tattggccttagatggtcaggtccaattacaccgaaagaaatggaatgtgtaaaacaatatgtcctagcaaagtatccagaatatgcaaatctcattgaa |
43052589 |
T |
|
| Q |
264 |
ggagatggaagtggtatagacatgtcaagttttatcatcaatgaggagccttcggaattaccaatgtcagatgatagaagaaagtcaccaagatcgcctt |
363 |
Q |
| |
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|| ||||||||||||| ||| ||||| |||||||| ||||||| |||||||| |||||||| ||||||||||||| ||||||||| |||| | ||| |
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| T |
43052590 |
ggcgatggaagtggtacagatatgtccagttttatgatcaatggggagcctttaaaattaccactgtcagatgatagtagaaagtcattaagaccatctt |
43052689 |
T |
|
| Q |
364 |
---cttttggaagcaaccttcctgagatggatagaacacagttagagccatcaagactacttgatattctcaacaaaaaatcctcctttcctggaagttt |
460 |
Q |
| |
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|||||||||| ||| |||||| ||||||| |||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||| || |
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| T |
43052690 |
ataattttggaagcgaccctcctgaaatggatatgacacagctagagccatcaagactacttgatattctcaataaaaaatcatcctttcctggaagatt |
43052789 |
T |
|
| Q |
461 |
catctcgataccggaaattcaagctcaaaataaggttttgaaacattgtggtttgcctgatgatgagtatttggttct |
538 |
Q |
| |
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||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
43052790 |
catctcgatcccggaaattcaagctcagaataaggttttgaagcattgtggtttgcctgatgctgagtatttggttct |
43052867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 118 - 307
Target Start/End: Complemental strand, 45479770 - 45479581
Alignment:
| Q |
118 |
tgattcctgctcatatcatagctgaagcaatatcaactatccgcgacattgacctaagatggtcaggtccaatcacacagaaagaaatggaatatgtaga |
217 |
Q |
| |
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||||||| ||||| |||||||||||||| ||||||||||||||||| | || | |||||||||||||||||||||| ||||||||||||||||| || |
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| T |
45479770 |
tgattccagctcacatcatagctgaagcgatatcaactatccgcgaattcgatattagatggtcaggtccaatcacaccaaaagaaatggaatatgttga |
45479671 |
T |
|
| Q |
218 |
agaatatgtcctagcaaagtatcctgaatatgcaaatctaattgaaggagatggaagtggtatagacatgtcaagttttatcatcaatga |
307 |
Q |
| |
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| | ||||| |||||||||||||| |||||| ||| | |||||||||||||||| ||| ||||||||||| | |||||||||||||| |
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| T |
45479670 |
acagtatgttctagcaaagtatccagaatattcaaggttgattgaaggagatggaaatgggatagacatgtctacctttatcatcaatga |
45479581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 403 - 507
Target Start/End: Complemental strand, 45479467 - 45479363
Alignment:
| Q |
403 |
tagagccatcaagactacttgatattctcaacaaaaaatcctcctttcctggaagtttcatctcgataccggaaattcaagctcaaaataaggttttgaa |
502 |
Q |
| |
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|||||| |||||| ||||||||||||||||||| |||||||| ||| | ||||||||||| ||||| || ||||||||||||||||||||||||||||| |
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| T |
45479467 |
tagagcaatcaaggttacttgatattctcaacaagaaatcctcatttaccggaagtttcatatcgatccccgaaattcaagctcaaaataaggttttgaa |
45479368 |
T |
|
| Q |
503 |
acatt |
507 |
Q |
| |
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|||| |
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| T |
45479367 |
gcatt |
45479363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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