View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5853_low_31 (Length: 247)

Name: NF5853_low_31
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5853_low_31
NF5853_low_31
[»] chr8 (6 HSPs)
chr8 (1-244)||(29934507-29934757)
chr8 (1-84)||(1219163-1219246)
chr8 (1-84)||(19712711-19712794)
chr8 (2-66)||(39143310-39143374)
chr8 (202-239)||(17936152-17936189)
chr8 (20-92)||(39919331-39919403)
[»] chr5 (7 HSPs)
chr5 (1-244)||(13390367-13390615)
chr5 (134-235)||(16119835-16119939)
chr5 (1-92)||(18149376-18149467)
chr5 (202-239)||(37268142-37268179)
chr5 (136-235)||(20251657-20251759)
chr5 (202-239)||(40632864-40632901)
chr5 (1-92)||(21825177-21825269)
[»] chr4 (7 HSPs)
chr4 (1-116)||(28709112-28709227)
chr4 (134-244)||(28708973-28709085)
chr4 (1-92)||(42396712-42396803)
chr4 (134-235)||(22322558-22322662)
chr4 (202-239)||(44546437-44546474)
chr4 (1-92)||(18430447-18430538)
chr4 (5-61)||(26893348-26893404)
[»] chr3 (6 HSPs)
chr3 (1-113)||(25280404-25280517)
chr3 (134-239)||(25280546-25280654)
chr3 (2-66)||(16898638-16898702)
chr3 (2-45)||(10773255-10773298)
chr3 (1-61)||(30188556-30188617)
chr3 (2-82)||(30045226-30045306)
[»] chr7 (7 HSPs)
chr7 (1-92)||(13427964-13428055)
chr7 (1-92)||(38889896-38889987)
chr7 (1-78)||(43656110-43656186)
chr7 (202-239)||(7567168-7567205)
chr7 (1-66)||(21120582-21120647)
chr7 (203-239)||(6458919-6458955)
chr7 (13-66)||(29352721-29352773)
[»] chr6 (5 HSPs)
chr6 (1-92)||(25026749-25026840)
chr6 (1-92)||(18489707-18489798)
chr6 (134-231)||(5195386-5195486)
chr6 (202-239)||(5675712-5675749)
chr6 (1-92)||(16477641-16477733)
[»] chr2 (6 HSPs)
chr2 (1-92)||(26438319-26438410)
chr2 (202-239)||(45468367-45468404)
chr2 (202-239)||(45701404-45701441)
chr2 (20-92)||(11123638-11123710)
chr2 (134-235)||(30515923-30516027)
chr2 (1-49)||(12915772-12915820)
[»] chr1 (2 HSPs)
chr1 (202-239)||(20819822-20819859)
chr1 (2-54)||(7637654-7637706)


Alignment Details
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 29934757 - 29934507
Alignment:
Q  1 aatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctgatacaaacaacaggcacctatcaaggat 100  Q
    ||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||  | ||||||| ||||||||||||||||||||||||||||    
T  29934757 aatatattgctcaaaagagaggtgattcaccccgcacaaggtgtgctaacgtgatgaatcgcccaaggtcttatacaaacaacaggcacctatcaaggat 29934658  T
Q  101 acccgctcccaaggagnnnnnnnnnnnnnnnnn----ttacatgatacccatacaaggtagtgggtatctccactaatcgtggaagtcaaacgaaagagg 196  Q
    | ||||||||||||||                     ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  29934657 atccgctcccaaggagagaaaaaactataaaaaaaaattacatgatacccatacaaggtagtgggtatctccaccaatcgtggaagccaaacgaaagagg 29934558  T
Q  197 ---aacaattgacgaaagccataaaaaagaattcaacttcacctttgctac 244  Q
       |||| |||||||||||||||||||||||||||||||||||||| ||||    
T  29934557 cacaacatttgacgaaagccataaaaaagaattcaacttcaccttttctac 29934507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 1219246 - 1219163
Alignment:
Q  1 aatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctgatacaaacaaca 84  Q
    |||||||| ||||||| |||  ||||||| ||||||||||||||| ||||||||| ||||||| || |||||||||||||||||    
T  1219246 aatatattactcaaaatagaattgattcaccccgcacaagatgtgctaacgtgataaatcatccaaagtctgatacaaacaaca 1219163  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 19712794 - 19712711
Alignment:
Q  1 aatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctgatacaaacaaca 84  Q
    |||||||| ||||||| ||   || |||| ||||||||||||||| ||||||||||||||||| || |||||||||||||||||    
T  19712794 aatatattactcaaaaaaggaatggttcaccccgcacaagatgtgctaacgtgatgaatcatccaaagtctgatacaaacaaca 19712711  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 39143374 - 39143310
Alignment:
Q  2 atatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaa 66  Q
    ||||||||||||||||  | |||||||| |||||||||| |||| ||| ||||||||||| ||||    
T  39143374 atatattgctcaaaagcaaagtgattcaccccgcacaaggtgtggtaaagtgatgaatcacctaa 39143310  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 239
Target Start/End: Complemental strand, 17936189 - 17936152
Alignment:
Q  202 ttgacgaaagccataaaaaagaattcaacttcaccttt 239  Q
    |||||||||||||||||||||| |||| ||||||||||    
T  17936189 ttgacgaaagccataaaaaagagttcagcttcaccttt 17936152  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 39919331 - 39919403
Alignment:
Q  20 aggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctgatacaaacaacaggcaccta 92  Q
    |||| ||||| || ||||||| |||| |||  |||||||||| | || ||||| |||||||||||||||||||    
T  39919331 aggtaattcaccctgcacaaggtgtgctaaaatgatgaatcacccaatgtctgttacaaacaacaggcaccta 39919403  T

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Target: chr5 (Bit Score: 109; Significance: 6e-55; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 13390367 - 13390615
Alignment:
Q  1 aatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctgatacaaacaacaggcacctatcaaggat 100  Q
    ||||||| |||||||||||| |||||||| ||||||||||||||| |||||||||||| || |||| ||||||||||||||||| |||||||||||||||    
T  13390367 aatatatagctcaaaagagaagtgattcaccccgcacaagatgtgctaacgtgatgaaccacctaaagtctgatacaaacaacatgcacctatcaaggat 13390466  T
Q  101 acccgctcccaaggag--nnnnnnnnnnnnnnnnnttacatgatacccatacaaggtagtgggtatctccactaatcgtggaagtcaaacgaaagaggaa 198  Q
    ||||||||||||| ||                   ||||||||||||||||||||||||||||||||| ||| ||||||| ||| |||||| ||||||||    
T  13390467 acccgctcccaagaaggaaaaaaactaaaaaaaacttacatgatacccatacaaggtagtgggtatcttcaccaatcgtgaaagccaaacggaagaggaa 13390566  T
Q  199 caa---ttgacgaaagccataaaaaagaattcaacttcacctttgctac 244  Q
    |||   ||||||||||| |||||||||||||||||||||||||| ||||    
T  13390567 caacatttgacgaaagctataaaaaagaattcaacttcaccttttctac 13390615  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 134 - 235
Target Start/End: Complemental strand, 16119939 - 16119835
Alignment:
Q  134 ttacatgatacccatacaaggtagtgggtatctccactaatcgtggaagtcaaacgaaagaggaacaa---ttgacgaaagccataaaaaagaattcaac 230  Q
    ||||||||||||||||||| ||||||| ||||||||| ||||||| || ||||||| ||||| |||||   |||||||| ||||||||||||||||||||    
T  16119939 ttacatgatacccatacaaagtagtggatatctccaccaatcgtgaaaatcaaacggaagagaaacaacatttgacgaaggccataaaaaagaattcaac 16119840  T
Q  231 ttcac 235  Q
    |||||    
T  16119839 ttcac 16119835  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 18149376 - 18149467
Alignment:
Q  1 aatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctgatacaaacaacaggcaccta 92  Q
    |||||||||||||||||  ||||| |||| |||||||||| |||| ||| ||| |||| || | || ||||||||||||||||| |||||||    
T  18149376 aatatattgctcaaaagtaaggtggttcaccccgcacaaggtgtgctaaagtggtgaaacacccaatgtctgatacaaacaacatgcaccta 18149467  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 202 - 239
Target Start/End: Complemental strand, 37268179 - 37268142
Alignment:
Q  202 ttgacgaaagccataaaaaagaattcaacttcaccttt 239  Q
    |||||||||||||||||||||| |||||||||||||||    
T  37268179 ttgacgaaagccataaaaaagagttcaacttcaccttt 37268142  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 235
Target Start/End: Original strand, 20251657 - 20251759
Alignment:
Q  136 acatgatacccatacaaggtagtgggtatctccactaatcgtggaagtcaaacgaaagaggaacaa---ttgacgaaagccataaaaaagaattcaactt 232  Q
    ||||||||||||||||| | | ||| || |||||| ||||||| ||  ||||||||| || |||||   ||||| |||||||||||||||| |||| |||    
T  20251657 acatgatacccatacaaagcaatggatacctccaccaatcgtgaaaaccaaacgaaaaagaaacaacatttgacaaaagccataaaaaagagttcatctt 20251756  T
Q  233 cac 235  Q
    |||    
T  20251757 cac 20251759  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 40632864 - 40632901
Alignment:
Q  202 ttgacgaaagccataaaaaagaattcaacttcaccttt 239  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  40632864 ttgacgagagccataaaaaagaattcagcttcaccttt 40632901  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 21825269 - 21825177
Alignment:
Q  1 aatatattgctcaaaag-agaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctgatacaaacaacaggcaccta 92  Q
    ||||||||||||||||| | |||||||||| |||||||||| |||| ||| ||||  || || | || ||||| ||||||||| | |||||||    
T  21825269 aatatattgctcaaaagaaaaggtgattcaccccgcacaaggtgtgctaaagtgagaaaacacccaacgtctgttacaaacaaaaagcaccta 21825177  T

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Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 28709227 - 28709112
Alignment:
Q  1 aatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctgatacaaacaacaggcacctatcaaggat 100  Q
    |||||||| ||||||||||   ||||||| ||||||||||||||| ||||||||||||||||| ||  |||||||||||||||| || |||||||||||     
T  28709227 aatatattactcaaaagaggaatgattcaccccgcacaagatgtgctaacgtgatgaatcatccaatatctgatacaaacaacatgcccctatcaaggac 28709128  T
Q  101 acccgctcccaaggag 116  Q
    ||||||||| ||||||    
T  28709127 acccgctcctaaggag 28709112  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 134 - 244
Target Start/End: Complemental strand, 28709085 - 28708973
Alignment:
Q  134 ttacatgatacccatacaaggtagtgggtatctccactaatcgtggaagtcaaacgaaagaggaacaa---ttgacgaaagccataaaaaagaattcaac 230  Q
    ||||||||| ||||||||| ||| ||||||||||||| |||| || ||| ||||||||||||||||||   ||||||| ||||||||||||||||||| |    
T  28709085 ttacatgatgcccatacaaagta-tgggtatctccaccaatcatgaaagccaaacgaaagaggaacaacatttgacgacagccataaaaaagaattcacc 28708987  T
Q  231 ttcacctttgctac 244  Q
    ||||||||| ||||    
T  28708986 ttcaccttttctac 28708973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 42396712 - 42396803
Alignment:
Q  1 aatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctgatacaaacaacaggcaccta 92  Q
    |||||||||||||||||| |||||||| | |||||||||| | || ||| |||||||| || | || ||||| ||||||||||| |||||||    
T  42396712 aatatattgctcaaaagaaaggtgatttaccccgcacaaggtatgctaaagtgatgaaacacccaatgtctgttacaaacaacaagcaccta 42396803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 235
Target Start/End: Original strand, 22322558 - 22322662
Alignment:
Q  134 ttacatgatacccatacaaggtagtgggtatctccactaatcgtggaagtcaaacgaaagaggaacaa---ttgacgaaagccataaaaaagaattcaac 230  Q
    ||||||||||||||||||| | ||||||| ||||||| ||||||| ||  |||||||||  || ||||   | || || ||||||||||| |||||||||    
T  22322558 ttacatgatacccatacaaaggagtgggtgtctccaccaatcgtgaaaaccaaacgaaattggtacaaaattcgaagagagccataaaaaggaattcaac 22322657  T
Q  231 ttcac 235  Q
    |||||    
T  22322658 ttcac 22322662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 202 - 239
Target Start/End: Complemental strand, 44546474 - 44546437
Alignment:
Q  202 ttgacgaaagccataaaaaagaattcaacttcaccttt 239  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  44546474 ttgacgaaagccataaaaaagaattcagcttcaccttt 44546437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 18430447 - 18430538
Alignment:
Q  1 aatatattgctcaaaagagaggtgattcatcccgcacaagatgtgtt-aacgtgatgaatcatctaaggtctgatacaaacaacaggcaccta 92  Q
    |||||||||||||| ||  |||||||||| ||||||||||||||||| || ||||||||||| | || ||||  ||||||| ||| |||||||    
T  18430447 aatatattgctcaagagcaaggtgattca-cccgcacaagatgtgttaaaagtgatgaatcacccaaagtctattacaaaccacatgcaccta 18430538  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 26893404 - 26893348
Alignment:
Q  5 tattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatca 61  Q
    |||||||||||||| |||| ||||| || ||||||| |||| ||| |||||||||||    
T  26893404 tattgctcaaaagaaaggtaattcaccctgcacaaggtgtgctaaagtgatgaatca 26893348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 25280404 - 25280517
Alignment:
Q  1 aatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtc-tgatacaaacaacaggcacctatcaagga 99  Q
    |||||||| ||||||||||   ||||||| ||||||||||||||| || |||||||||||| | |||||| |||||||||||||| ||||||||||||||    
T  25280404 aatatattactcaaaagaggaatgattcaccccgcacaagatgtgctagcgtgatgaatcacccaaggtcctgatacaaacaacatgcacctatcaagga 25280503  T
Q  100 tacccgctcccaag 113  Q
     |||||||||||||    
T  25280504 aacccgctcccaag 25280517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 134 - 239
Target Start/End: Original strand, 25280546 - 25280654
Alignment:
Q  134 ttacatgatacccatacaaggtagtgggtatctccactaatcgtggaagtcaaacgaaagaggaacaa---ttgacgaaagccataaaaaagaattcaac 230  Q
    ||||||||| ||||||||| ||||||||||||||||  |||| || ||| ||||||||||||||||||   ||||||| ||||||||||||||||||| |    
T  25280546 ttacatgatgcccatacaaagtagtgggtatctccatcaatcatgaaagccaaacgaaagaggaacaacatttgacgacagccataaaaaagaattcacc 25280645  T
Q  231 ttcaccttt 239  Q
    |||||||||    
T  25280646 ttcaccttt 25280654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 16898702 - 16898638
Alignment:
Q  2 atatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaa 66  Q
    ||||||||||||||||  | ||||||||  |||||||| ||||| ||| ||||||||||||||||    
T  16898702 atatattgctcaaaagcaaagtgattcactccgcacaaaatgtgctaaagtgatgaatcatctaa 16898638  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 10773298 - 10773255
Alignment:
Q  2 atatattgctcaaaagagaggtgattcatcccgcacaagatgtg 45  Q
    ||||||||||||||||| |||||||||| |||||||||| ||||    
T  10773298 atatattgctcaaaagaaaggtgattcaccccgcacaaggtgtg 10773255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 30188617 - 30188556
Alignment:
Q  1 aatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaa-cgtgatgaatca 61  Q
    ||||||||||||||| || |||||||||| ||||||| ||||||| |||  |||||||||||    
T  30188617 aatatattgctcaaacgaaaggtgattcaccccgcactagatgtgctaagagtgatgaatca 30188556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 30045306 - 30045226
Alignment:
Q  2 atatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctgatacaaacaa 82  Q
    ||||||||||||||||| |||||| ||| || ||||||| ||||  || |||| ||| || |||| ||||| |||||||||    
T  30045306 atatattgctcaaaagaaaggtgaatcaccctgcacaaggtgtgcaaaagtgaagaaacacctaaagtctgttacaaacaa 30045226  T

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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 13427964 - 13428055
Alignment:
Q  1 aatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctgatacaaacaacaggcaccta 92  Q
    |||||||||||||||||| |||||||||| ||| |||||| |||||||| ||||||||||| | || ||||| ||||||||||| |||||||    
T  13427964 aatatattgctcaaaagaaaggtgattcaccccacacaaggtgtgttaaagtgatgaatcacccaacgtctgttacaaacaacaagcaccta 13428055  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 38889987 - 38889896
Alignment:
Q  1 aatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctgatacaaacaacaggcaccta 92  Q
    |||||||||||||||||| |||||||||| |||||||||| |||  ||| |||||||| || | || ||||| ||||||||||| |||||||    
T  38889987 aatatattgctcaaaagaaaggtgattcaccccgcacaaggtgtactaaagtgatgaaacacccaacgtctgttacaaacaacaagcaccta 38889896  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 43656186 - 43656110
Alignment:
Q  1 aatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctgatacaa 78  Q
    |||||||| ||||||||  || |||||||||||||||||| |||| ||| ||||||||||||||||  ||||||||||    
T  43656186 aatatattactcaaaagtaag-tgattcatcccgcacaaggtgtgctaaagtgatgaatcatctaatatctgatacaa 43656110  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 7567168 - 7567205
Alignment:
Q  202 ttgacgaaagccataaaaaagaattcaacttcaccttt 239  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  7567168 ttgacgaaagccataaaaaagaattcagcttcaccttt 7567205  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 21120647 - 21120582
Alignment:
Q  1 aatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaa 66  Q
    |||||||||||||||||    ||||||||||||||||||| |||| ||| |||||||||| |||||    
T  21120647 aatatattgctcaaaagcagtgtgattcatcccgcacaaggtgtgctaaagtgatgaatcctctaa 21120582  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 6458955 - 6458919
Alignment:
Q  203 tgacgaaagccataaaaaagaattcaacttcaccttt 239  Q
    |||||||||||||||||||||||| ||||||||||||    
T  6458955 tgacgaaagccataaaaaagaatttaacttcaccttt 6458919  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 29352773 - 29352721
Alignment:
Q  13 aaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaa 66  Q
    ||||||||| |||||||||| |||||||||||| ||| |||||||||| |||||    
T  29352773 aaaagagag-tgattcatcctgcacaagatgtgctaaagtgatgaatcctctaa 29352721  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 25026749 - 25026840
Alignment:
Q  1 aatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctgatacaaacaacaggcaccta 92  Q
    |||||||| ||||||||||| || ||||| |||||| ||  |||| ||| |||||||| |||| || |||||||||||| ||||||||||||    
T  25026749 aatatattactcaaaagagaagtaattcaccccgcataaagtgtgctaaagtgatgaaccatccaatgtctgatacaaaaaacaggcaccta 25026840  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 18489798 - 18489707
Alignment:
Q  1 aatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctgatacaaacaacaggcaccta 92  Q
    |||||||||||||||||| |||||||||| |||||||||| |||| ||| ||||  || || | || ||||| ||||||||| | |||||||    
T  18489798 aatatattgctcaaaagaaaggtgattcaccccgcacaaggtgtgctaaagtgagaaaacacccaacgtctgttacaaacaaaaagcaccta 18489707  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 231
Target Start/End: Complemental strand, 5195486 - 5195386
Alignment:
Q  134 ttacatgatacccatacaaggtagtgggtatctccactaatcgtggaagtcaaacgaaagagg---aacaattgacgaaagccataaaaaagaattcaac 230  Q
    |||||||| |||||||||| | ||||||||||||||| ||||||| ||  ||||||| | |||   |||| | || ||||||||||||||||| ||||||    
T  5195486 ttacatgacacccatacaatgaagtgggtatctccaccaatcgtgaaaaccaaacgataaaggtataacattcgaagaaagccataaaaaagagttcaac 5195387  T
Q  231 t 231  Q
    |    
T  5195386 t 5195386  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 5675712 - 5675749
Alignment:
Q  202 ttgacgaaagccataaaaaagaattcaacttcaccttt 239  Q
    ||||||||||||||||||||| || |||||||||||||    
T  5675712 ttgacgaaagccataaaaaagtatccaacttcaccttt 5675749  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 16477641 - 16477733
Alignment:
Q  1 aatatattgctcaaaag-agaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctgatacaaacaacaggcaccta 92  Q
    ||||||||||||||||| | |||||||||| |||||||||| |||| ||| ||||  || || | || ||||| ||||||||| | |||||||    
T  16477641 aatatattgctcaaaagaaaaggtgattcaccccgcacaaggtgtgctaaagtgagaaaacacccaacgtctgttacaaacaaaaagcaccta 16477733  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 26438410 - 26438319
Alignment:
Q  1 aatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctgatacaaacaacaggcaccta 92  Q
    ||||||||| |||||||| |||||||||| || ||||||| |||| ||| |||||||| |||| || || || ||||||||||| |||||||    
T  26438410 aatatattgttcaaaagaaaggtgattcaccctgcacaaggtgtgctaaagtgatgaaacatccaacgtttgttacaaacaacaagcaccta 26438319  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 45468367 - 45468404
Alignment:
Q  202 ttgacgaaagccataaaaaagaattcaacttcaccttt 239  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  45468367 ttgacgaaagccataaaaaagaattcagcttcaccttt 45468404  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 45701404 - 45701441
Alignment:
Q  202 ttgacgaaagccataaaaaagaattcaacttcaccttt 239  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  45701404 ttgacgaaagccataaaaaagaattcagcttcaccttt 45701441  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 11123710 - 11123638
Alignment:
Q  20 aggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctgatacaaacaacaggcaccta 92  Q
    |||| ||||| |||||||||| |||| |||  |||||||||| | || ||||| |||||||||||||||||||    
T  11123710 aggtaattcaccccgcacaaggtgtgctaaaatgatgaatcacccaacgtctgttacaaacaacaggcaccta 11123638  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 235
Target Start/End: Original strand, 30515923 - 30516027
Alignment:
Q  134 ttacatgatacccatacaaggtagtgggtatctccactaatcgtggaagtcaaacgaaagagga---acaattgacgaaagccataaaaaagaattcaac 230  Q
    |||||||| | |||||||| | |||| |||||||||| ||||||| ||  ||||||| | ||||   ||| | || ||||||||||||||||| ||||||    
T  30515923 ttacatgacatccatacaaagaagtgagtatctccaccaatcgtgaaaaccaaacgataaaggagtaacattcgaagaaagccataaaaaagagttcaac 30516022  T
Q  231 ttcac 235  Q
    |||||    
T  30516023 ttcac 30516027  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 12915820 - 12915772
Alignment:
Q  1 aatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaa 49  Q
    ||||||||||||||| |||| |||||||| ||| |||||| ||||||||    
T  12915820 aatatattgctcaaacgagaagtgattcaccccacacaaggtgtgttaa 12915772  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 20819822 - 20819859
Alignment:
Q  202 ttgacgaaagccataaaaaagaattcaacttcaccttt 239  Q
    ||||||||||||||||||||||||||||||||||||||    
T  20819822 ttgacgaaagccataaaaaagaattcaacttcaccttt 20819859  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 7637654 - 7637706
Alignment:
Q  2 atatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtga 54  Q
    ||||||||||||||||| |||||||||| |||||||||| |||| ||| ||||    
T  7637654 atatattgctcaaaagaaaggtgattcaccccgcacaaggtgtgctaaagtga 7637706  T

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