View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5853_low_36 (Length: 241)
Name: NF5853_low_36
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5853_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 52809792 - 52810013
Alignment:
| Q |
1 |
cttgtattaccaatcaatcttcctactaacggaacaaggattgtgcgatatattacagtgcatactagcacactacagatgtcaaacacagacatgctgg |
100 |
Q |
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| T |
52809792 |
cttgtattaccaatcaatcttcctactaacggaacaaggattgtgcgatatattacagtgcatactagcacactacagatgtcaaacacagacatgctgg |
52809891 |
T |
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| Q |
101 |
ctgctggcaaatgaaattctccgatgttagagttcatcacatccccttgctcaacaaatagtgatgccatttgtgtaaatacaacagagtaacaaatggt |
200 |
Q |
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| T |
52809892 |
ctgctggcaaatgaaattctccgatgttagagttcatcacatccccttgctcaacaaatagtgatgccatttgtgtaaatacaacagagtaacaaatggt |
52809991 |
T |
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| Q |
201 |
gcatagccaaattggaagcatt |
222 |
Q |
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| T |
52809992 |
gcatagccaaattggaagcatt |
52810013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 56 - 211
Target Start/End: Complemental strand, 397578 - 397423
Alignment:
| Q |
56 |
cagtgcatactagcacactacagatgtcaaacacagacatgctggctgctggcaaatgaaattctccgatgttagagttcatcacatccccttgctcaac |
155 |
Q |
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| T |
397578 |
cagtgcatacaaggacactgcatatatcaaacacagacatggttgctgctggcaagtgaaattttcctaccttgttgttcattacatcaccttgttcgac |
397479 |
T |
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| Q |
156 |
aaatagtgatgccatttgtgtaaatacaacagagtaacaaatggtgcatagccaaa |
211 |
Q |
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| T |
397478 |
aaaaagagaagccatttgtgtgaatacaacagagtaaataatagtgcacagccaaa |
397423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 211
Target Start/End: Original strand, 3803290 - 3803361
Alignment:
| Q |
140 |
catccccttgctcaacaaatagtgatgccatttgtgtaaatacaacagagtaacaaatggtgcatagccaaa |
211 |
Q |
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|||| ||||| || ||||| || || ||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
3803290 |
catcgccttgttcgacaaaaagagaagccatttgtgtaaatacaacagagtaaataatagtgcatagccaaa |
3803361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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