View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5853_low_43 (Length: 214)
Name: NF5853_low_43
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5853_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 10 - 204
Target Start/End: Original strand, 27521322 - 27521516
Alignment:
| Q |
10 |
aggatcagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaa |
109 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27521322 |
aggatcagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaa |
27521421 |
T |
|
| Q |
110 |
tgcttcttggatgatggttggtgagaagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgt |
204 |
Q |
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||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27521422 |
tgcttcttggatgatggttggtgggcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgt |
27521516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 11 - 204
Target Start/End: Complemental strand, 27462112 - 27461919
Alignment:
| Q |
11 |
ggatcagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaat |
110 |
Q |
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||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27462112 |
ggatcagagacacagcggctaagagcatttccacggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaat |
27462013 |
T |
|
| Q |
111 |
gcttcttggatgatggttggtgagaagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgt |
204 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27462012 |
gcttcttggatgatggttggtgataagatgatgatgatggtgaacggcgtttgacagtgttgttgtgagtgtgatgatgaagcattgatgatgt |
27461919 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 11 - 204
Target Start/End: Complemental strand, 27482251 - 27482058
Alignment:
| Q |
11 |
ggatcagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaat |
110 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27482251 |
ggatcagagacacagcggctaagagcattcccgcggagactgaaaggaattgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaat |
27482152 |
T |
|
| Q |
111 |
gcttcttggatgatggttggtgagaagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgt |
204 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
27482151 |
gcttcttggatgatggttggtgataagatgatgatgatggtgaacggcgtttgacagtgttgttgtgagtgtgatgatgaggcattgatgatgt |
27482058 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 11 - 204
Target Start/End: Complemental strand, 18986212 - 18986019
Alignment:
| Q |
11 |
ggatcagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaat |
110 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
18986212 |
ggatcagagacacagcggctaagagtattcccacggagactgaaagaaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaat |
18986113 |
T |
|
| Q |
111 |
gcttcttggatgatggttggtgagaagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgt |
204 |
Q |
| |
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||||||||||||| |||||||||| |||||||||||||||||||| | ||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
18986112 |
gcttcttggatgacggttggtgagcagatgatgatgatggtgaacagagtttgacagtgttgttgtgagggtgatgatgaagcattgatgatgt |
18986019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 11 - 204
Target Start/End: Complemental strand, 1758260 - 1758067
Alignment:
| Q |
11 |
ggatcagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaat |
110 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1758260 |
ggatcagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaat |
1758161 |
T |
|
| Q |
111 |
gcttcttggatgatggttggtgagaagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgt |
204 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
1758160 |
gcttcttgagtgatggttggtgagcagatgatgatgatggtgaacggcgtttgacagagtttttgtgagagtgatgatgaagcattgatgatgt |
1758067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 11 - 184
Target Start/End: Complemental strand, 29425408 - 29425232
Alignment:
| Q |
11 |
ggatcagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaat |
110 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29425408 |
ggatcagagacacagcggctaagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgcatgagattgcttgcgtcaaaagaat |
29425309 |
T |
|
| Q |
111 |
gcttcttggatgatggttggtgagaagatgatgatgat---ggtgaacggcgtttgacagagttgttgtgagtgtga |
184 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29425308 |
gcttcttggatgatggttggtgagcagatgatgatgatggtggtgaacggcgtttgacagagttgttgtgagtgtga |
29425232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 29568357 - 29568536
Alignment:
| Q |
11 |
ggatcagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaat |
110 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
29568357 |
ggatcagagacacagcggctaagagcattcccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaat |
29568456 |
T |
|
| Q |
111 |
gcttcttggatgatggttggtgagaagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatga |
190 |
Q |
| |
|
|||||||||||||| ||||||||| ||| ||||||||||||||| ||||||||| |||||| |||||||||||||||||| |
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|
| T |
29568457 |
gcttcttggatgatagttggtgagcagaagatgatgatggtgaatggcgtttgaaagagtttttgtgagtgtgatgatga |
29568536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 11 - 204
Target Start/End: Complemental strand, 29168367 - 29168171
Alignment:
| Q |
11 |
ggatcagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaat |
110 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
29168367 |
ggatcagagacacagcagctaagagcattcccacggagactgaaaggaagtgtaatggtggagaagccattacgggtgagattgcttgcgttgaaagaat |
29168268 |
T |
|
| Q |
111 |
gcttcttggatgatggttggtgagaagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatg---atgaagcattgatgatgt |
204 |
Q |
| |
|
|||| ||||||||| ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
29168267 |
gcttattggatgatagttggtgagcagaagatgatgatggtgaacgacgtttgacagagttgttgtgagtgtgatgatgatgaagcattgatgatgt |
29168171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 31 - 189
Target Start/End: Original strand, 29569708 - 29569866
Alignment:
| Q |
31 |
aagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttgg |
130 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
29569708 |
aagagcattgccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcggaagaatgcttcttggatgatagttgg |
29569807 |
T |
|
| Q |
131 |
tgagaagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatg |
189 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29569808 |
tgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatg |
29569866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 31 - 190
Target Start/End: Complemental strand, 27918742 - 27918583
Alignment:
| Q |
31 |
aagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttgg |
130 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||| |
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|
| T |
27918742 |
aagagcgttgccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgccagaagaatgcttcttggatgatagttgg |
27918643 |
T |
|
| Q |
131 |
tgagaagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatga |
190 |
Q |
| |
|
|||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
27918642 |
tgagcagaagatgatgatggtgaactgcgtttgacagagttgttgtgagtgtgatgatga |
27918583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 11 - 204
Target Start/End: Complemental strand, 25518596 - 25518400
Alignment:
| Q |
11 |
ggatcagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaat |
110 |
Q |
| |
|
||||||| ||||||| || ||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
25518596 |
ggatcagcgacacagcagcgaagagcattaccacgaagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaat |
25518497 |
T |
|
| Q |
111 |
gcttcttggatgatggttggtgagaagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatg---aagcattgatgatgt |
204 |
Q |
| |
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|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
25518496 |
gcttcttggatgatggttggtgaggagaagatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaccaagcattgatgatgt |
25518400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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