View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5853_low_7 (Length: 469)
Name: NF5853_low_7
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5853_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 25 - 245
Target Start/End: Original strand, 13998123 - 13998350
Alignment:
| Q |
25 |
actggtacgttttatctgcttgtataaatgcgtgcatgtatca------gtggtattattagtgtactactagcacgttttatctgcttgtttaaaggca |
118 |
Q |
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| T |
13998123 |
actggtacgttttatctgcttgtataaatgcgtgcatgtatcactatcagtagtattattagtgtactactagcacgttttatctgcttgtttaaaggca |
13998222 |
T |
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| Q |
119 |
gttaatgtgttcattcacattcatattgagatgctgaaaaatgaactactccctccatttcaaataagtgaaggttgttgtacacggatt-aaaaaatac |
217 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
13998223 |
gttaatgtgttcattcacattcagattgagatgctgaaaaatgaactactccctccatttcaaataagtgaaggttgttgtacacggattaaaaaaatac |
13998322 |
T |
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| Q |
218 |
aataaagtagtataaaaagatgtcattt |
245 |
Q |
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| T |
13998323 |
aataaagtagtataaaaatatgtcattt |
13998350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 25 - 212
Target Start/End: Complemental strand, 3962611 - 3962424
Alignment:
| Q |
25 |
actggtacgttttatctgcttgtataaatgcgtgcatgtatcagtggtattattagtgtactactagcacgttttatctgcttgtttaaaggcagttaat |
124 |
Q |
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| T |
3962611 |
actggtacgttttatctgcttgtataaatgcgtgcatgtatcagtagtattattactgtactactagcacgttttatctgcttgtttaaaggcagttaat |
3962512 |
T |
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| Q |
125 |
gtgttcattcacattcatattgagatgctgaaaaatgaactactccctccatttcaaataagtgaaggttgttgtacacggattaaaa |
212 |
Q |
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| T |
3962511 |
gtgttcattcacattcatattgagatgctgaaaaatgaactacttcctccatttcaaataagtgaaggttgttgtacacggatcaaaa |
3962424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 426
Target Start/End: Original strand, 32462906 - 32462980
Alignment:
| Q |
352 |
catttcttcggctgatttgtgttatttataggaacatgttattcagtttgcatatttatcaggcggtttgcgagc |
426 |
Q |
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| T |
32462906 |
catttgttccgctgatctgtactatttacaagaacatgctattcaatttgcttatttatcaggcggtttgcgagc |
32462980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 343 - 432
Target Start/End: Original strand, 9605775 - 9605864
Alignment:
| Q |
343 |
ttggtttggcatttcttcggctgatttgtgttatttataggaacatgttattcagtttgcatatttatcaggcggtttgcgagctcgtcg |
432 |
Q |
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| T |
9605775 |
ttggcttgacatttgttctgctgatccgtattatttacagaaacatgatattcagtttgcttatttatcaggcagtttgcaagcacgtcg |
9605864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 343 - 432
Target Start/End: Original strand, 9833346 - 9833435
Alignment:
| Q |
343 |
ttggtttggcatttcttcggctgatttgtgttatttataggaacatgttattcagtttgcatatttatcaggcggtttgcgagctcgtcg |
432 |
Q |
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| T |
9833346 |
ttggcttgacatttgttctgctgatccgtattatttacagaaacatgatattcagtttgcttatttatcaggcagtttgcaagcacgtcg |
9833435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 426
Target Start/End: Complemental strand, 32734318 - 32734266
Alignment:
| Q |
374 |
tatttataggaacatgttattcagtttgcatatttatcaggcggtttgcgagc |
426 |
Q |
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| T |
32734318 |
tatttataggaacatgctattgaatttgcttatttatcaggcggtttacgagc |
32734266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 440
Target Start/End: Complemental strand, 2365405 - 2365346
Alignment:
| Q |
381 |
aggaacatgttattcagtttgcatatttatcaggcggtttgcgagctcgtcgtacttttt |
440 |
Q |
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| T |
2365405 |
aggagcatgctattcagtttgcttattcatcaggaggtttgagagctcgtcgttcttttt |
2365346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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