View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5853_low_8 (Length: 447)

Name: NF5853_low_8
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5853_low_8
NF5853_low_8
[»] chr6 (23 HSPs)
chr6 (280-423)||(27588279-27588424)
chr6 (224-423)||(19413096-19413309)
chr6 (224-322)||(26909730-26909828)
chr6 (337-420)||(26807355-26807438)
chr6 (17-84)||(27587796-27587863)
chr6 (224-407)||(28790278-28790469)
chr6 (87-134)||(27587905-27587952)
chr6 (17-81)||(25487985-25488049)
chr6 (17-81)||(26061233-26061297)
chr6 (17-81)||(26081203-26081267)
chr6 (337-429)||(27586668-27586760)
chr6 (352-421)||(26651211-26651280)
chr6 (352-421)||(26757179-26757248)
chr6 (337-429)||(27712631-27712723)
chr6 (87-134)||(25487868-25487915)
chr6 (338-405)||(26853736-26853803)
chr6 (87-134)||(27312877-27312924)
chr6 (252-338)||(27660150-27660236)
chr6 (17-70)||(27659669-27659722)
chr6 (86-134)||(26634381-26634429)
chr6 (86-134)||(26740357-26740405)
chr6 (19-71)||(27599637-27599689)
chr6 (340-400)||(27702302-27702362)
[»] scaffold0277 (2 HSPs)
scaffold0277 (224-407)||(9730-9921)
scaffold0277 (337-407)||(718-788)
[»] scaffold0419 (1 HSPs)
scaffold0419 (224-400)||(11428-11612)
[»] chr4 (1 HSPs)
chr4 (252-429)||(5083180-5083371)
[»] chr2 (1 HSPs)
chr2 (87-134)||(17989397-17989444)
[»] chr8 (1 HSPs)
chr8 (340-385)||(29269962-29270007)


Alignment Details
Target: chr6 (Bit Score: 89; Significance: 1e-42; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 280 - 423
Target Start/End: Original strand, 27588279 - 27588424
Alignment:
280 aatgaagatacgttgagatgcagaaggatcatgtgcagtgttccattca---tacccaatgtacaactgagctgtaaagcatatcattacccaataccct 376  Q
    ||||||||||||| |||||||||||||||||||| || |||||||||||   ||||||||||| ||||||| ||| ||||||||||||||||||||||||    
27588279 aatgaagatacgtcgagatgcagaaggatcatgt-caatgttccattcacaatacccaatgtaaaactgagatgttaagcatatcattacccaataccct 27588377  T
377 ttcgaacaagccacagattctgtggtgtgagacatctctacacatct 423  Q
    |||| |||||||| ||||||||||||||||  |||||||||||||||    
27588378 ttcgtacaagccatagattctgtggtgtgaaccatctctacacatct 27588424  T

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Target: chr6; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 224 - 423
Target Start/End: Complemental strand, 19413309 - 19413096
Alignment:
224 attagagaagtaatctaaaacacaaatactcaccaagggcaggcatggattgcgcgaatgaagatacgttgagatgcagaaggatcatgtgcagtgttcc 323  Q
    |||||||||||||||||||||| ||||||||||||  |||| |||||||| || | |||||||||||  | |||||||||||||||||||||| | |||     
19413309 attagagaagtaatctaaaacataaatactcaccagaggcatgcatggatggcacaaatgaagatacaataagatgcagaaggatcatgtgcaattttca 19413210  T
324 attcatacccaat--------------gtacaactgagctgtaaagcatatcattacccaataccctttcgaacaagccacagattctgtggtgtgagac 409  Q
    ||||||||||| |              |||||||| || |||||||||||||| ||| |||| ||||||||||||||||||| |||||||||||| || |    
19413209 attcatacccattttagcaacgaaacagtacaactaagttgtaaagcatatcactactcaatgccctttcgaacaagccacatattctgtggtgtaagcc 19413110  T
410 atctctacacatct 423  Q
    ||||||||||||||    
19413109 atctctacacatct 19413096  T

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Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 224 - 322
Target Start/End: Complemental strand, 26909828 - 26909730
Alignment:
224 attagagaagtaatctaaaacacaaatactcaccaagggcaggcatggattgcgcgaatgaagatacgttgagatgcagaaggatcatgtgcagtgttc 322  Q
    |||||||||||| |||||||| || | |||||||| ||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||| |||||    
26909828 attagagaagtactctaaaacgcacacactcaccaggggcaggcatggattgcacgaatgaagatacatcgagatgcagaaggatcatgtgcaatgttc 26909730  T

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Target: chr6; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 337 - 420
Target Start/End: Complemental strand, 26807438 - 26807355
Alignment:
337 gtacaactgagctgtaaagcatatcattacccaataccctttcgaacaagccacagattctgtggtgtgagacatctctacaca 420  Q
    ||||||||||||||||||| ||||||||| | |||  ||||||| |||||||||||||||||||||||||| ||||||||||||    
26807438 gtacaactgagctgtaaagtatatcattaacaaatgacctttcggacaagccacagattctgtggtgtgagccatctctacaca 26807355  T

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Target: chr6; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 27587796 - 27587863
Alignment:
17 aatatctgcagcagaaacatcctccacaaaaccttacatcaggtctcaccatatccataccagagcac 84  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
27587796 aatatctgcagcacaaacatcctccacaaaaccttacatcaggtctcactatatcaataccagagcac 27587863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 224 - 407
Target Start/End: Complemental strand, 28790469 - 28790278
Alignment:
224 attagagaagtaatctaaaacacaaatactcaccaagggcaggcatggattgcgcgaatgaagatacgttgagatgcagaaggatcatgtgcagtgttcc 323  Q
    ||||||||||||| ||||||||||||||| |||||      ||||||||| ||  ||||||||||||||  ||| ||||||||||||| |||| ||| |     
28790469 attagagaagtaacctaaaacacaaatacacacca------ggcatggatagcatgaatgaagatacgtcaagacgcagaaggatcatatgcaatgtaca 28790376  T
324 attcatacccaatgta--------------caactgagctgtaaagcatatcattacccaataccctttcgaacaagccacagattctgtggtgtgag 407  Q
    |||||| || ||||||              |||||||||||||||||||||| ||| ||||| || ||||||||||||||||||||||||||||||||    
28790375 attcatgcctaatgtagcaacgaaacagtacaactgagctgtaaagcatatctttatccaatgccttttcgaacaagccacagattctgtggtgtgag 28790278  T

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Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 27587905 - 27587952
Alignment:
87 aaggatctgataaatgtcggttctcagattcagttctttatcccacat 134  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||    
27587905 aaggatcttataaatgtcggttgtcagattcagttctttatcccacat 27587952  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 25488049 - 25487985
Alignment:
17 aatatctgcagcagaaacatcctccacaaaaccttacatcaggtctcaccatatccataccagag 81  Q
    ||||| ||||||| |||||||||||| ||||  |||||||||||||||||||||| | |||||||    
25488049 aatatttgcagcacaaacatcctccataaaaaattacatcaggtctcaccatatcaaaaccagag 25487985  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 26061297 - 26061233
Alignment:
17 aatatctgcagcagaaacatcctccacaaaaccttacatcaggtctcaccatatccataccagag 81  Q
    ||||| ||||||| |||||||||||| ||||  |||||||||||||||||||||| | |||||||    
26061297 aatatatgcagcacaaacatcctccataaaaaattacatcaggtctcaccatatcaaaaccagag 26061233  T

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Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 26081267 - 26081203
Alignment:
17 aatatctgcagcagaaacatcctccacaaaaccttacatcaggtctcaccatatccataccagag 81  Q
    ||||| ||||||| |||||||||||| ||||  |||||||||||||||||||||| | |||||||    
26081267 aatatatgcagcacaaacatcctccataaaaaattacatcaggtctcaccatatcaaaaccagag 26081203  T

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Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 429
Target Start/End: Original strand, 27586668 - 27586760
Alignment:
337 gtacaactgagctgtaaagcatatcattacccaataccctttcgaacaagccacagattctgtggtgtgagacatctctacacatctagtatg 429  Q
    ||||||||||  || ||||||||||||||| || | || |||| |||||||||||||||||||||| |||| || || || |||||| |||||    
27586668 gtacaactgaattgcaaagcatatcattactcactgccatttcaaacaagccacagattctgtggtttgagccacctatagacatctcgtatg 27586760  T

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Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 352 - 421
Target Start/End: Complemental strand, 26651280 - 26651211
Alignment:
352 aaagcatatcattacccaataccctttcgaacaagccacagattctgtggtgtgagacatctctacacat 421  Q
    |||||||| |||||| || | ||||||||||||| | ||||||||||||||| |||| ||||||| ||||    
26651280 aaagcatagcattactcactgccctttcgaacaaccaacagattctgtggtgcgagaaatctctagacat 26651211  T

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Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 352 - 421
Target Start/End: Complemental strand, 26757248 - 26757179
Alignment:
352 aaagcatatcattacccaataccctttcgaacaagccacagattctgtggtgtgagacatctctacacat 421  Q
    |||||||| |||||| || | ||||||||||||| | ||||||||||||||| |||| ||||||| ||||    
26757248 aaagcatagcattactcactgccctttcgaacaaccaacagattctgtggtgcgagaaatctctagacat 26757179  T

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Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 429
Target Start/End: Original strand, 27712631 - 27712723
Alignment:
337 gtacaactgagctgtaaagcatatcattacccaataccctttcgaacaagccacagattctgtggtgtgagacatctctacacatctagtatg 429  Q
    ||||||||||  || ||||||||||||||| || | || |||| |||||||||| ||||||||||| |||| || || || |||||| |||||    
27712631 gtacaactgaattgcaaagcatatcattactcagtgccatttcaaacaagccacggattctgtggtttgagccacctatagacatctcgtatg 27712723  T

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Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 25487915 - 25487868
Alignment:
87 aaggatctgataaatgtcggttctcagattcagttctttatcccacat 134  Q
    |||||||| || |||||||||||||||||| | |||||||||||||||    
25487915 aaggatctcatgaatgtcggttctcagatttatttctttatcccacat 25487868  T

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Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 405
Target Start/End: Complemental strand, 26853803 - 26853736
Alignment:
338 tacaactgagctgtaaagcatatcattacccaataccctttcgaacaagccacagattctgtggtgtg 405  Q
    |||||||| |||| ||||||||||||||| || | ||||||||||||  | ||||||| |||||||||    
26853803 tacaactgggctgcaaagcatatcattactcactgccctttcgaacagccaacagattttgtggtgtg 26853736  T

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Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 27312877 - 27312924
Alignment:
87 aaggatctgataaatgtcggttctcagattcagttctttatcccacat 134  Q
    |||||||| ||||||||||||||| ||||| ||||||||||| |||||    
27312877 aaggatctcataaatgtcggttcttagatttagttctttatcacacat 27312924  T

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Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 338
Target Start/End: Original strand, 27660150 - 27660236
Alignment:
252 ctcaccaagggcaggcatggattgcgcgaatgaagatacgttgagatgcagaaggatcatgtgcagtgttccattcatacccaatgt 338  Q
    ||||||| ||| ||| |||||| |  ||||||||  ||||| ||| ||||||||||||||||| | ||||| ||||| |||||||||    
27660150 ctcaccaggggaaggtatggatagaacgaatgaaattacgtagagctgcagaaggatcatgtgaaatgttcaattcacacccaatgt 27660236  T

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Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 27659669 - 27659722
Alignment:
17 aatatctgcagcagaaacatcctccacaaaaccttacatcaggtctcaccatat 70  Q
    |||||||| |||| |||||||||||  |||| ||||||||| ||||||||||||    
27659669 aatatctgtagcacaaacatcctccttaaaaacttacatcatgtctcaccatat 27659722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 26634429 - 26634381
Alignment:
86 gaaggatctgataaatgtcggttctcagattcagttctttatcccacat 134  Q
    ||||||| | ||||||||||||||| ||||| ||||||||||| |||||    
26634429 gaaggatttcataaatgtcggttcttagatttagttctttatcacacat 26634381  T

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Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 26740405 - 26740357
Alignment:
86 gaaggatctgataaatgtcggttctcagattcagttctttatcccacat 134  Q
    ||||||| | ||||||||||||||| ||||| ||||||||||| |||||    
26740405 gaaggatttcataaatgtcggttcttagatttagttctttatcacacat 26740357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 27599637 - 27599689
Alignment:
19 tatctgcagcagaaacatcctccacaaaaccttacatcaggtctcaccatatc 71  Q
    ||||||||||| || ||||||||  |||| |||||||||||| ||||||||||    
27599637 tatctgcagcacaagcatcctccctaaaaacttacatcaggtatcaccatatc 27599689  T

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Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 400
Target Start/End: Original strand, 27702302 - 27702362
Alignment:
340 caactgagctgtaaagcatatcattacccaataccctttcgaacaagccacagattctgtg 400  Q
    ||||||||||| ||||||||||||||| || |  |||||||||||| | || |||||||||    
27702302 caactgagctgcaaagcatatcattactcactgtcctttcgaacaaccaacggattctgtg 27702362  T

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Target: scaffold0277 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 224 - 407
Target Start/End: Original strand, 9730 - 9921
Alignment:
224 attagagaagtaatctaaaacacaaatactcaccaagggcaggcatggattgcgcgaatgaagatacgttgagatgcagaaggatcatgtgcagtgttcc 323  Q
    ||||||||||||| ||||||||||||||| |||||      ||||||||| ||  ||||||||||||||  ||| ||||||||||||| |||| ||| |     
9730 attagagaagtaacctaaaacacaaatacacacca------ggcatggatagcatgaatgaagatacgtcaagacgcagaaggatcatatgcaatgtaca 9823  T
324 attcatacccaatgta--------------caactgagctgtaaagcatatcattacccaataccctttcgaacaagccacagattctgtggtgtgag 407  Q
    |||||| || ||||||              |||||||||||||||||||||| ||| ||||| || ||||||||||||||||||||||||||||||||    
9824 attcatgcctaatgtagcaacgaaacagtacaactgagctgtaaagcatatctttatccaatgccttttcgaacaagccacagattctgtggtgtgag 9921  T

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Target: scaffold0277; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 337 - 407
Target Start/End: Original strand, 718 - 788
Alignment:
337 gtacaactgagctgtaaagcatatcattacccaataccctttcgaacaagccacagattctgtggtgtgag 407  Q
    ||||||||||||||||||||||||| ||| ||||| || ||||||||||||||||||||||||||||||||    
718 gtacaactgagctgtaaagcatatctttatccaatgccttttcgaacaagccacagattctgtggtgtgag 788  T

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Target: scaffold0419 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 224 - 400
Target Start/End: Complemental strand, 11612 - 11428
Alignment:
224 attagagaagtaatctaaaacacaaatactcaccaagggcaggcatggattgcgcgaatgaagatacgttgagatgcagaaggatcatgtgcagtgttcc 323  Q
    ||||||||||||| ||||||||||||||| |||||      ||||||||| ||  ||||||||||||||  ||| ||||||||||||| |||| ||| |     
11612 attagagaagtaacctaaaacacaaatacacacca------ggcatggatagcatgaatgaagatacgtcaagacgcagaaggatcatatgcaatgtaca 11519  T
324 attcatacccaatgta--------------caactgagctgtaaagcatatcattacccaataccctttcgaacaagccacagattctgtg 400  Q
    |||||| || ||||||              |||||||||||||||||||||| ||| ||||| || |||||||||||||||||||||||||    
11518 attcatgcctaatgtagcaacgaaacagtacaactgagctgtaaagcatatctttatccaatgccttttcgaacaagccacagattctgtg 11428  T

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Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 252 - 429
Target Start/End: Complemental strand, 5083371 - 5083180
Alignment:
252 ctcaccaagggcaggcatggattgcgcgaatgaagatacgttgagatgcagaaggatcatgtgcagtgttccattcatacccaat--------------g 337  Q
    ||||||| ||||| |||||||| || |||| ||| |||||| ||| ||||||||||||||||||| ||||| | |||||||||||              |    
5083371 ctcaccaggggcaagcatggatagcacgaaagaatatacgtcgagctgcagaaggatcatgtgcaatgttcaactcatacccaatgtagcaacgccacag 5083272  T
338 tacaactgagctgtaaagcatatcattacccaataccctttcgaacaagccacagattctgtggtgtgagacatctctacacatctagtatg 429  Q
    ||||||||||||| ||||||||||||||| || | ||||||| ||||| |||| ||||||||||  |||| || ||||| |||||| |||||    
5083271 tacaactgagctgcaaagcatatcattactcactgccctttcaaacaatccacggattctgtggattgagccacctctagacatctcgtatg 5083180  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 17989397 - 17989444
Alignment:
87 aaggatctgataaatgtcggttctcagattcagttctttatcccacat 134  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||    
17989397 aaggatcggataaatgttggttctcagattcagttctttatcccacat 17989444  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 385
Target Start/End: Original strand, 29269962 - 29270007
Alignment:
340 caactgagctgtaaagcatatcattacccaataccctttcgaacaa 385  Q
    ||||||||||| ||||||||||||||| || | |||||||||||||    
29269962 caactgagctgcaaagcatatcattactcactgccctttcgaacaa 29270007  T

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