View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5853_low_9 (Length: 411)
Name: NF5853_low_9
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5853_low_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 42 - 411
Target Start/End: Complemental strand, 39479432 - 39479043
Alignment:
| Q |
42 |
ttaattcacgtgagagaaaacaaaatacaccctcaaaaaattcacctattattattactgaatttcaattccaaaaagcataaaacaaagaagataaata |
141 |
Q |
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| T |
39479432 |
ttaattcacgtgagagaaaacaaaatacaccctcaaaaaattcacctattattattactgaatttcaattccaaaaagcataaaacaaagaagataaata |
39479333 |
T |
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| Q |
142 |
gagatagatctaaaatcttcaacagaaaagttc-------aat---ttccgaaattgaatgatacaataaaa----------cctaaattgaagaaactt |
221 |
Q |
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| T |
39479332 |
gatatagatctaaaatcttcaacagaaaagttcgttcaataatccattccgaaattgaatgatacaataaaatacaataaaacctaaattgaagaaactt |
39479233 |
T |
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| Q |
222 |
gaacatcaccgtttaacctcagaatattattgcaatcaaacccacaaccacactgagggcattcaaggaaattctcaactccaaaaccagcagaagtaat |
321 |
Q |
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| T |
39479232 |
gaacatcaccgtttaacctcagaatattattgcaatcaaacccacaaccacactgagggcattcaaggaaattctcaactccaaaaccagcagaagtaat |
39479133 |
T |
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| Q |
322 |
cccaacagaaaaatcaatatcattacccttacgagaaacctcaacaatattcaaccacaaaagcaaaatcctgacggaaacacccttcag |
411 |
Q |
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| T |
39479132 |
cccaacagaaaaatcaatatcattacccttacgagaaacctcaacaatattcaaccacaaaagcaaaatcctgacggaaacacccttcag |
39479043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 55179154 - 55179216
Alignment:
| Q |
113 |
caaaaagcataaaacaaagaa-gataaatagagatagatctaaaatcttcaacagaaaagttc |
174 |
Q |
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| T |
55179154 |
caaaaaacataaaacaaagaaagataaatagagatagatatacaatcttcaacagaaaagttc |
55179216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 55179065 - 55179102
Alignment:
| Q |
61 |
acaaaatacaccctcaaaaaattcacctattattatta |
98 |
Q |
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| T |
55179065 |
acaaaatgcaccctcataaaattcacctattattatta |
55179102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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