View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5854-Insertion-1 (Length: 923)
Name: NF5854-Insertion-1
Description: NF5854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5854-Insertion-1 |
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Alignment Details
Target: chr8 (Bit Score: 844; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 844; E-Value: 0
Query Start/End: Original strand, 7 - 909
Target Start/End: Original strand, 1885702 - 1886608
Alignment:
| Q |
7 |
caaatttggcgcaacaaaatacttccacgggattaagaactttctttggcgagttactcgcgaatttcttccaacaaagggttcgactgcaggctaacgg |
106 |
Q |
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| T |
1885702 |
caaatttggcgcaacaaaatacttccacgggattaagaactttctttggcgagttactcgcgaatttcttccaacaaagggttcgactgcaggctaacgg |
1885801 |
T |
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| Q |
107 |
agtcaattgaacccaacagtgtccgttctataatgaccacgaagacaacatgcacacattatttctatgtggcaaaatcgcccaatgttggcagctgctg |
206 |
Q |
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| T |
1885802 |
agtcaattgaacccaacagtgtccgttctataatgaccacgaagacaacatgcacacattatttctatgtggcaaaatcgcccaatgttggcagctgctg |
1885901 |
T |
|
| Q |
207 |
ggtctttgttaagacataactgttgcgattttgaatccgggtgatatctcctctattatttttgcaattctgcatcgtttagagccctcacaacagccaa |
306 |
Q |
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| T |
1885902 |
ggtctttgttaagacataactgttgcgattttgaatccaggtgatatctcctctat-atttttgcaattctgcatcgtttagagccctcacaacagccaa |
1886000 |
T |
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| Q |
307 |
tctttagcacgctgatgtggatcatttgaaaaaatagaaataatatggaatgatacctcagacaagtgtcaggttatctgtgatagagccacgatgttgt |
406 |
Q |
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| T |
1886001 |
tctttagcacgctgatgtggatcatttgaaaaaatagaaataatatggaatgatacctcagacaagtgtcaggttatctgtgatagagccacgatgttgt |
1886100 |
T |
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| Q |
407 |
tttcaagttggaagaatgctcaggaggtaaaacaaacatcaagtgtatctcatgcggtcaggcacgttgagaaatgggttaaacaatctcaggcaggtac |
506 |
Q |
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| T |
1886101 |
tttcaagttggaagaatgctcaggaggtaaaacaaacatcaagtgtatctcatgcggtcaggcacgttgagaaatgggttaaacaatctcaggcaggtac |
1886200 |
T |
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| Q |
507 |
aagtgtaatgttgacgcttcctgtctgaagctctggatagagtgggcataagaatctatatcagagatgaagaagaagcttttgtgttggccggaccgaa |
606 |
Q |
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| T |
1886201 |
aagtgtaatgttgacgcttcctgtctgaagctctggatagagtgggcataagaatctatatcagagatgaagaagaagcttttgtgttggccggaccgaa |
1886300 |
T |
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| Q |
607 |
cggatattgatattgatgttgatctcctcttcttgatattgatgttggagt-gcgcttaagttgttaaaggctatggaataggcaagagagttacaattg |
705 |
Q |
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| T |
1886301 |
tggatattgatattgatgttgatctcctcttcttgatattgatgttggagtggcgcttaagttgttaaaggctatggaataggcaagagagttacaattg |
1886400 |
T |
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| Q |
706 |
tagaacatgtatttcgaggtagacgccaagacaattgtagacaacatatatgggaagcagatcggtgtatcggaatataatgaaataattagtaaatgtg |
805 |
Q |
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| T |
1886401 |
tagaacatgtatttcgaggtagacgccaagacaattgtagacaacatatatgggaagcagatcggtgtatcggaatataatgaaataattagtaaatgtg |
1886500 |
T |
|
| Q |
806 |
cttatatgtcaaattcattaggagac-atcaaacc-aactgcttatgggttagcta-ggtggctcgtac-gaaactagtttccatgtttattctcacatc |
901 |
Q |
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| T |
1886501 |
cttatatgtcaaattcattaggagacaatcaaaccaaactgcttatgggttagctagggtggctcctacggaaactagtttccatgtttattctcacatc |
1886600 |
T |
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| Q |
902 |
ccaccatg |
909 |
Q |
| |
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| T |
1886601 |
ccaacatg |
1886608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 300 - 351
Target Start/End: Original strand, 36256769 - 36256820
Alignment:
| Q |
300 |
cagccaatctttagcacgctgatgtggatcatttgaaaaaatagaaataata |
351 |
Q |
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| T |
36256769 |
cagccaatctttagcacacttatgttgagcatttggaaaaatagaaataata |
36256820 |
T |
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