View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5854-Insertion-10 (Length: 242)
Name: NF5854-Insertion-10
Description: NF5854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5854-Insertion-10 |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 22 - 242
Target Start/End: Complemental strand, 13855732 - 13855512
Alignment:
| Q |
22 |
atatccttaacaaaatacttaacagtattaacaaggcatgaaattacagtaaggagctacagtttttagtgtgcagtaagagacttcggattaatcnnnn |
121 |
Q |
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| T |
13855732 |
atatccttaacaaaatacttaacagtattaacaaggcatgaaattacagtaaggagctacagtttttagtgtgcagtaagagacttcggattaatctttt |
13855633 |
T |
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| Q |
122 |
nnncccttaagttggtcctttgttttccaacagatgagctcaccttccaaccgatgagctgcattgagctaaacgatctattctgtcttttgtgttaagt |
221 |
Q |
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| T |
13855632 |
tttcccttaagttggtcctttgttttccaacagatgagctcaccttccaaccgatgagctgcatcgagctaaacgatttattctgtcttttgtgttaagt |
13855533 |
T |
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| Q |
222 |
aagtctttacaaaccttgcca |
242 |
Q |
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| T |
13855532 |
aagtctttacaaaccttgcca |
13855512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 10108937 - 10108843
Alignment:
| Q |
22 |
atatccttaacaaaatacttaacagtattaacaaggcatgaaattacagtaaggagctacagtttttagtgtgcagtaagagacttcggattaatc |
117 |
Q |
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| T |
10108937 |
atatccttaataaaatactta-cagtattaacaaggcatgaatttacagtaaggagctacagttgtcagtttgcagtaagagacttcggattaatc |
10108843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 157 - 237
Target Start/End: Original strand, 10211213 - 10211293
Alignment:
| Q |
157 |
gagctcaccttccaaccgatgagctgcattgagctaaacgatctattctgtcttttgtgttaagtaagtctttacaaacct |
237 |
Q |
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| T |
10211213 |
gagctcaccttctaacagatgagctgcattgagctaaacgatctattccttcttttgttttaagtaagtctttccaaacct |
10211293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 9684140 - 9684216
Alignment:
| Q |
160 |
ctcaccttccaaccgatgagctgcattgagctaaacgatctattctgtcttttgtgttaagtaagtctttacaaacc |
236 |
Q |
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| T |
9684140 |
ctcaccttccaaccgatgagctgtattgagctaaacgatctattccatcttttgttttcagtaaatctttacaaacc |
9684216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 10210184 - 10210263
Alignment:
| Q |
22 |
atatccttaacaaaatacttaacagtattaacaaggcatgaaattacagtaaggagctacagtttttagtgtgcagtaaga |
102 |
Q |
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| T |
10210184 |
atatccttaataaaatactta-cagtattaacaagacatgaaattacagtaaggggctacaatgtttagtgtgcaataaga |
10210263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 10213394 - 10213468
Alignment:
| Q |
160 |
ctcaccttccaaccgatgagctgcattgagctaaacgatctattctgtcttttgtgttaagtaagtctttacaaa |
234 |
Q |
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| T |
10213394 |
ctcaccttccaaccgctgagctgtattgagctaaacgatatattcggtcttttgttttaactaagtctttccaaa |
10213468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 237
Target Start/End: Original strand, 12105516 - 12105593
Alignment:
| Q |
160 |
ctcaccttccaaccgatgagctgcattgagctaaacgatctattctgtcttttgtgttaagtaagtctttacaaacct |
237 |
Q |
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| T |
12105516 |
ctcaccttccaagagctgagctttattgagagaaacgatctattcagttttttgtgttaattatgtctctacaaacct |
12105593 |
T |
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