View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5854-Insertion-2 (Length: 810)

Name: NF5854-Insertion-2
Description: NF5854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5854-Insertion-2
NF5854-Insertion-2
[»] chr6 (7 HSPs)
chr6 (449-809)||(3880124-3880492)
chr6 (9-308)||(3879218-3879544)
chr6 (329-454)||(3879569-3879694)
chr6 (566-682)||(6860361-6860479)
chr6 (562-678)||(20701429-20701544)
chr6 (563-679)||(16180489-16180606)
chr6 (558-607)||(4043344-4043393)
[»] chr1 (24 HSPs)
chr1 (558-808)||(4430879-4431129)
chr1 (558-682)||(27102512-27102636)
chr1 (558-682)||(9312967-9313091)
chr1 (558-678)||(11439647-11439767)
chr1 (563-679)||(46768509-46768626)
chr1 (558-679)||(34775205-34775325)
chr1 (589-672)||(32863204-32863287)
chr1 (558-678)||(32882701-32882817)
chr1 (563-658)||(50588909-50588999)
chr1 (558-679)||(10785088-10785209)
chr1 (737-808)||(11439841-11439914)
chr1 (563-679)||(38546815-38546931)
chr1 (570-693)||(31290660-31290783)
chr1 (558-632)||(7451888-7451962)
chr1 (558-678)||(9557241-9557362)
chr1 (563-679)||(49820488-49820605)
chr1 (558-678)||(27905766-27905885)
chr1 (562-668)||(46603705-46603810)
chr1 (589-687)||(376464-376564)
chr1 (638-678)||(16149110-16149150)
chr1 (560-667)||(17033939-17034045)
chr1 (563-617)||(10605090-10605144)
chr1 (558-603)||(34159052-34159097)
chr1 (623-684)||(42374512-42374573)
[»] chr5 (24 HSPs)
chr5 (558-693)||(26405175-26405310)
chr5 (563-682)||(25992331-25992450)
chr5 (558-682)||(7194928-7195052)
chr5 (558-691)||(8297792-8297924)
chr5 (558-679)||(26045590-26045711)
chr5 (691-808)||(14302221-14302338)
chr5 (558-672)||(8731278-8731391)
chr5 (560-682)||(7391626-7391750)
chr5 (563-679)||(13953878-13953996)
chr5 (567-684)||(5187270-5187387)
chr5 (638-679)||(30097666-30097707)
chr5 (558-682)||(33109829-33109951)
chr5 (558-666)||(23426646-23426754)
chr5 (692-807)||(26045742-26045856)
chr5 (563-682)||(14302076-14302195)
chr5 (589-648)||(21391936-21391995)
chr5 (589-679)||(7682886-7682976)
chr5 (591-681)||(33258549-33258639)
chr5 (636-682)||(37108129-37108175)
chr5 (558-655)||(17853106-17853203)
chr5 (624-672)||(31742504-31742552)
chr5 (558-679)||(4914128-4914247)
chr5 (561-682)||(10175010-10175130)
chr5 (611-679)||(27713405-27713474)
[»] chr3 (20 HSPs)
chr3 (558-682)||(50518716-50518840)
chr3 (558-713)||(14893229-14893384)
chr3 (564-671)||(14280182-14280289)
chr3 (558-678)||(37998836-37998956)
chr3 (558-680)||(33143579-33143700)
chr3 (560-681)||(4171075-4171196)
chr3 (563-682)||(25648013-25648132)
chr3 (558-674)||(37123708-37123824)
chr3 (559-682)||(48892981-48893104)
chr3 (611-684)||(14194258-14194331)
chr3 (563-682)||(28937360-28937473)
chr3 (558-678)||(32010121-32010241)
chr3 (565-679)||(25594142-25594256)
chr3 (724-804)||(4170937-4171015)
chr3 (558-682)||(41039487-41039611)
chr3 (558-678)||(46358009-46358129)
chr3 (737-807)||(37123569-37123640)
chr3 (590-664)||(14754942-14755016)
chr3 (593-665)||(7236130-7236202)
chr3 (738-808)||(14879624-14879695)
[»] chr7 (19 HSPs)
chr7 (558-659)||(6726046-6726147)
chr7 (570-675)||(16828739-16828844)
chr7 (564-693)||(33719285-33719413)
chr7 (558-682)||(24324425-24324549)
chr7 (558-680)||(1321126-1321246)
chr7 (564-680)||(42532892-42533008)
chr7 (560-658)||(47456703-47456800)
chr7 (745-808)||(8745341-8745405)
chr7 (558-682)||(16954819-16954942)
chr7 (558-674)||(44755906-44756021)
chr7 (563-667)||(28534137-28534240)
chr7 (558-673)||(8745469-8745583)
chr7 (591-673)||(36674809-36674891)
chr7 (691-804)||(24324575-24324685)
chr7 (638-678)||(3478683-3478723)
chr7 (558-669)||(9427706-9427816)
chr7 (558-634)||(43235688-43235764)
chr7 (730-792)||(42533074-42533136)
chr7 (638-679)||(26385864-26385904)
[»] chr4 (24 HSPs)
chr4 (560-674)||(42719494-42719608)
chr4 (558-693)||(16832646-16832782)
chr4 (558-677)||(41117595-41117714)
chr4 (563-679)||(28967208-28967323)
chr4 (589-673)||(48098645-48098729)
chr4 (558-664)||(52009173-52009279)
chr4 (558-648)||(9262807-9262897)
chr4 (558-668)||(12296518-12296627)
chr4 (558-679)||(49747861-49747982)
chr4 (559-679)||(2061460-2061580)
chr4 (721-807)||(16832826-16832913)
chr4 (592-682)||(25754205-25754295)
chr4 (558-668)||(35947934-35948044)
chr4 (724-785)||(19673309-19673370)
chr4 (724-785)||(19815031-19815092)
chr4 (762-799)||(25753370-25753407)
chr4 (563-658)||(21983507-21983601)
chr4 (558-677)||(38636861-38636979)
chr4 (737-795)||(38637056-38637112)
chr4 (563-680)||(38930120-38930237)
chr4 (765-804)||(49528265-49528304)
chr4 (622-679)||(39420727-39420784)
chr4 (744-793)||(39420865-39420914)
chr4 (723-795)||(48098535-48098608)
[»] chr2 (24 HSPs)
chr2 (558-713)||(41086431-41086589)
chr2 (564-689)||(34230524-34230648)
chr2 (558-682)||(7696291-7696415)
chr2 (591-693)||(13337569-13337671)
chr2 (558-679)||(4975078-4975199)
chr2 (558-679)||(4992986-4993107)
chr2 (558-678)||(29997279-29997399)
chr2 (558-668)||(42802427-42802540)
chr2 (558-682)||(37770280-37770401)
chr2 (560-672)||(15361063-15361175)
chr2 (558-678)||(10173206-10173326)
chr2 (558-672)||(25504516-25504629)
chr2 (558-654)||(33533371-33533467)
chr2 (558-682)||(29139579-29139701)
chr2 (558-673)||(1269791-1269905)
chr2 (762-804)||(13337453-13337495)
chr2 (563-669)||(22884746-22884852)
chr2 (558-668)||(33788253-33788362)
chr2 (558-668)||(37559800-37559910)
chr2 (622-678)||(2063212-2063269)
chr2 (558-679)||(4472276-4472397)
chr2 (566-667)||(10772871-10772971)
chr2 (564-669)||(27740331-27740435)
chr2 (747-807)||(37770473-37770534)
[»] scaffold0050 (1 HSPs)
scaffold0050 (558-679)||(37040-37161)
[»] chr8 (8 HSPs)
chr8 (558-682)||(17656363-17656487)
chr8 (564-678)||(12197708-12197822)
chr8 (564-678)||(12442136-12442250)
chr8 (558-679)||(8862251-8862370)
chr8 (558-679)||(10248192-10248314)
chr8 (563-652)||(8843746-8843833)
chr8 (729-788)||(12197889-12197948)
chr8 (729-788)||(12442317-12442376)
[»] scaffold0063 (2 HSPs)
scaffold0063 (589-682)||(58458-58551)
scaffold0063 (724-807)||(58316-58400)
[»] scaffold0119 (1 HSPs)
scaffold0119 (558-673)||(41797-41911)
[»] scaffold1384 (1 HSPs)
scaffold1384 (627-679)||(1347-1400)


Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 449 - 809
Target Start/End: Original strand, 3880124 - 3880492
Alignment:
Q  449 taccaataatttagtctagttgcactataagttgannnnnnnnnnnggcttttaatactcgaaaaactgaagataaaatgtactaaaaaagacaacagct 548  Q
    |||||||||||||||||||||||||||||||||||           |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3880124 taccaataatttagtctagttgcactataagttgatttttttt---ggcttttaatactctaaaaactgaagataaaatgtactaaaaaagacaacagct 3880220  T
Q  549 agnnnnnnn---------aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgc 639  Q
    ||                |||||||||||||||||||||||||||||  ||||||||||||| | ||| |||||||||||||||||||||||||| || |    
T  3880221 agttttttttttttttttaacaacaaattttattaaacaatcagatccctgctcaagacgaacagagaccggtgaaactgaaaatacaaacaaaaggttc 3880320  T
Q  640 cgtatataggcggaacacccaaaaataaacaccctaaaaacactccttaggacacgtcaccacctaaaacagacatttttccgaaaaatgaccattataa 739  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||| |||||    
T  3880321 cgtatataagcggaacaccaaaaaataaacaccctaaaaacactccttaggacacgtcaccacctaaaacaaacttttttccgaaaaacgaccactataa 3880420  T
Q  740 aaatgatatccaacaccatctgtcgtcactactcaccccctaag-aaaaacacccctc-aaattaaactcca 809  Q
    ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  3880421 aaacgatatccaacaccatctgtcgtcactactcaccccctaagaaaaaacacccctcaaaattaaactcca 3880492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 9 - 308
Target Start/End: Original strand, 3879218 - 3879544
Alignment:
Q  9 gaaattagggcataactcatcattacaaaatcagctaataaggtaagagatatcttcaaatatcatatcannnnnnn-gtctaatgtgcgactttttaaa 107  Q
    ||||||||||||||| ||||| |||||||| || || ||||||| |||||||| |||| |||||||||||        ||||||||||| ||||||||||    
T  3879218 gaaattagggcataattcatctttacaaaaccaacttataaggtgagagatatgttcacatatcatatcattttttttgtctaatgtgcaactttttaaa 3879317  T
Q  108 gtacatgaagtgaatccacttttattccaatccc----------------ttttggtagaccc----------aacattgaagaagatgatgcggtgagt 181  Q
    ||||||||||||||||||||||||||||||||||                |||||||||||||          |||||||||||||||||||||||||||    
T  3879318 gtacatgaagtgaatccacttttattccaatccctatttttctctttcttttttggtagacccaaggcattccaacattgaagaagatgatgcggtgagt 3879417  T
Q  182 aaggtgcgaggcttgatatttatggagtatatatcttttttgaataatttatggagtatatttaactcataacattaacctcaaggtggataatgaggct 281  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3879418 aaggtgtgaggcttgatatttatggagtatatatcttttttgaataatttatggagtatatttaactcataacattaacctcaaggtggataatgaggct 3879517  T
Q  282 atataaccaacgatatgatgtttttgt 308  Q
    ||||||| |||||||||||| ||||||    
T  3879518 atataactaacgatatgatgcttttgt 3879544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 329 - 454
Target Start/End: Original strand, 3879569 - 3879694
Alignment:
Q  329 ctaacaatatgatgctgcaattgaacatataaatcaagtgaaaagacaattatgtccaacaaagtagcccaaatgtctcaatcattccatatttgggagt 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3879569 ctaacaatatgatgctgcaattgaacatataaatcaagtgaaaagacaattatgtccaacaaagtagcccaaatgtctcaatcattccatatttgggagt 3879668  T
Q  429 atataagttctctccaccattaccaa 454  Q
    |||||||||||||||||  |||||||    
T  3879669 atataagttctctccacggttaccaa 3879694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 566 - 682
Target Start/End: Complemental strand, 6860479 - 6860361
Alignment:
Q  566 attttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatata--ggcggaacacccaaaa 663  Q
    ||||||||||||||  |||||  ||||||||| ||||| |||||||||||||| | |||||||||||||   ||||||||||  ||||||||||||||||    
T  6860479 attttattaaacaactagatccctgctcaagatgaatatagatcggtgaaactaagaatacaaacaaaagacgccgtatataggggcggaacacccaaaa 6860380  T
Q  664 ataaacaccctaaaaacac 682  Q
    |||||||||||||||||||    
T  6860379 ataaacaccctaaaaacac 6860361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 562 - 678
Target Start/End: Original strand, 20701429 - 20701544
Alignment:
Q  562 acaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacccaa 661  Q
    |||||||||||||||||| || |||  | ||||||||||| | |||||||||||||||| ||||||||||||| | || ||||||||||||||||||       
T  20701429 acaaattttattaaacaaccaaatccct-ctcaagacgaacagagatcggtgaaactgagaatacaaacaaaaggcgctgtatataggcggaacacctgg 20701527  T
Q  662 aaataaacaccctaaaa 678  Q
    |||||||||| ||||||    
T  20701528 aaataaacacactaaaa 20701544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 563 - 679
Target Start/End: Original strand, 16180489 - 16180606
Alignment:
Q  563 caaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacc--ca 660  Q
    |||||||||||||| |||||||||| ||||||||||||| ||||||||||||||| || ||||||||  |||    ||||||||| ||||||||||   |    
T  16180489 caaattttattaaa-aatcagatctctgctcaagacgaacaaagatcggtgaaacagataatacaaatgaaagacaccgtatataagcggaacaccaaaa 16180587  T
Q  661 aaaataaacaccctaaaaa 679  Q
    |||||||||||| ||||||    
T  16180588 aaaataaacaccataaaaa 16180606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 607
Target Start/End: Original strand, 4043344 - 4043393
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaaga 607  Q
    |||| ||||||||||| || ||||| |||| |||||||||||||||||||    
T  4043344 aacagcaaattttatttaaaaatcaaatctctgctcaagacgaataaaga 4043393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 4e-40; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 558 - 808
Target Start/End: Complemental strand, 4431129 - 4430879
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggc-ggaaca 656  Q
    |||| ||||||||||||||||| || |||| ||||||||||||||| ||| |||||||| ||| ||||||||||||| | |||||||| |||| ||||||    
T  4431129 aacagcaaattttattaaacaaacatatctctgctcaagacgaatagagaccggtgaaattgagaatacaaacaaaaggcgccgtataaaggcgggaaca 4431030  T
Q  657 cccaaaaataaacaccctaaaaacactccttaggacacgtcaccacctaaaacagacatttttccgaaaaatgaccattataaaaatgatatccaacacc 756  Q
    || |||||| |||||||||||||||| | | || ||||||||||||||| |||| ||   ||  | |||||  ||||   |||||| ||||||||| |||    
T  4431029 cctaaaaat-aacaccctaaaaacacccttgagtacacgtcaccacctagaacaaactccttcgcaaaaaacaaccaccgtaaaaacgatatccaaaacc 4430931  T
Q  757 atctgtcgtcactactcaccccctaagaaaaacacccct-caaattaaactcc 808  Q
    ||| |||||| ||||||| |||| ||||||||||||||| |||||||||||||    
T  4430930 atccgtcgtcgctactca-ccccaaagaaaaacacccctccaaattaaactcc 4430879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 558 - 682
Target Start/End: Complemental strand, 27102636 - 27102512
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||| ||||||||||||||||| ||||||| || |||||||||| |||||  |||||| |||| ||||||||||||| ||||||||||||||||||||||    
T  27102636 aacagcaaattttattaaacaaccagatctctgttcaagacgaacaaagactggtgaacctgagaatacaaacaaaaggtgccgtatataggcggaacac 27102537  T
Q  658 ccaaaaataaacaccctaaaaacac 682  Q
    || ||||||||||||||||||||||    
T  27102536 ccgaaaataaacaccctaaaaacac 27102512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 558 - 682
Target Start/End: Original strand, 9312967 - 9313091
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    ||||||||||||||||||||||  |||||| ||||||||||||| | ||| |||||||||| | ||||||| ||||| | | ||||||||||||||||||    
T  9312967 aacaacaaattttattaaacaacgagatctctgctcaagacgaacagagaccggtgaaacttataatacaatcaaaaggcgtcgtatataggcggaacac 9313066  T
Q  658 ccaaaaataaacaccctaaaaacac 682  Q
    || ||||||||||||||||||||||    
T  9313067 ccgaaaataaacaccctaaaaacac 9313091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 558 - 678
Target Start/End: Original strand, 11439647 - 11439767
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||| ||| ||||||||||||| | | | ||||||| |||||||     
T  11439647 aacaacaaattttattaaacaaccagatctctgctcaagacgaacaaagatcggtgaaaatgagaatacaaacaaaaggcgacatatatagacggaacat 11439746  T
Q  658 ccaaaaataaacaccctaaaa 678  Q
    || ||||||||||||||||||    
T  11439747 ccgaaaataaacaccctaaaa 11439767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 563 - 679
Target Start/End: Complemental strand, 46768626 - 46768509
Alignment:
Q  563 caaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgcc-gtatataggcggaacacccaa 661  Q
    ||||||||||||||||| || ||  |||||||||||||| | |||| ||||||| |||  |||||||||||| | ||| |||| |||||||||||||| |    
T  46768626 caaattttattaaacaaccaaattcttgctcaagacgaacagagattggtgaaattgagcatacaaacaaaaggcgcccgtatgtaggcggaacacccga 46768527  T
Q  662 aaataaacaccctaaaaa 679  Q
    ||||||||||||||||||    
T  46768526 aaataaacaccctaaaaa 46768509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 558 - 679
Target Start/End: Complemental strand, 34775325 - 34775205
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||||||||||||||| ||  ||||| || | |||||||||||| ||||| || | || |||| ||||||||| ||| | ||||||||||||||||||||    
T  34775325 aacaacaaattttatttaatcatcaggtcct-gctcaagacgaacaaagaccgataaagctgagaatacaaactaaaggcgccgtatataggcggaacac 34775227  T
Q  658 ccaaaaataaacaccctaaaaa 679  Q
    || |||||||||||| ||||||    
T  34775226 ccgaaaataaacaccttaaaaa 34775205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 589 - 672
Target Start/End: Original strand, 32863204 - 32863287
Alignment:
Q  589 tgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacccaaaaataaacacc 672  Q
    |||||||||||||||   || ||||||| ||| ||||||||| ||||||| |||||||||||||||||||  ||||||||||||    
T  32863204 tgctcaagacgaataggaattggtgaaaatgagaatacaaactaaatgtgtcgtatataggcggaacacctgaaaataaacacc 32863287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 558 - 678
Target Start/End: Complemental strand, 32882817 - 32882701
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||| |||||||||||||||||||| |||  ||||||||||||| | |   | | ||| | |||||||||||| ||| | ||||||||||||| ||||||    
T  32882817 aacagcaaattttattaaacaatcacatccctgctcaagacgaacaga---ctg-gaatcagaaaatacaaactaaaggcgccgtatataggcagaacac 32882722  T
Q  658 ccaaaaataaacaccctaaaa 678  Q
    || ||||||||||||||||||    
T  32882721 ccgaaaataaacaccctaaaa 32882701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 563 - 658
Target Start/End: Original strand, 50588909 - 50588999
Alignment:
Q  563 caaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacc 658  Q
    |||||||||||||| | | |||||| |||||||||||||||||||||||||||||     |||||||| ||| | |||||||||||||||||||||    
T  50588909 caaattttattaaaaact-agatctctgctcaagacgaataaagatcggtgaaac----gatacaaacgaaaggcgccgtatataggcggaacacc 50588999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 558 - 679
Target Start/End: Original strand, 10785088 - 10785209
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||| ||||||| ||| ||||| ||||||  ||||||||||||||| |||  ||| ||||||| ||||||||| |||   |||||| | || ||||||||    
T  10785088 aacatcaaatttcatttaacaaccagatccctgctcaagacgaatagagacgggtaaaactgagaatacaaactaaaaacgccgtacaaagtcggaacac 10785187  T
Q  658 ccaaaaataaacaccctaaaaa 679  Q
    ||||| ||||||||| ||||||    
T  10785188 ccaaatataaacaccttaaaaa 10785209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 737 - 808
Target Start/End: Original strand, 11439841 - 11439914
Alignment:
Q  737 taaaaatgatatccaacaccatctgtcgtcactact-caccccctaagaaaaacacccctca-aattaaactcc 808  Q
    |||||||||||||||||||||  | ||||||||||| ||||||| ||||||||||||||||| |||||||||||    
T  11439841 taaaaatgatatccaacaccacttatcgtcactactccacccccaaagaaaaacacccctcagaattaaactcc 11439914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 563 - 679
Target Start/End: Original strand, 38546815 - 38546931
Alignment:
Q  563 caaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacccaaa 662  Q
    ||||||||||| || ||   |||| |||||||||||||| ||||||| ||||  | || | ||||||| ||||||| ||||||||||||||||| || ||    
T  38546815 caaattttatttaaaaactcgatcattgctcaagacgaacaaagatcagtgattcagagagtacaaactaaatgtgtcgtatataggcggaacatccgaa 38546914  T
Q  663 aataaacaccctaaaaa 679  Q
    |||||| ||| ||||||    
T  38546915 aataaaaaccataaaaa 38546931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 570 - 693
Target Start/End: Original strand, 31290660 - 31290783
Alignment:
Q  570 tattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacccaaaaataaac 669  Q
    |||||||||| ||||||||| ||||| ||||| | |||  ||||| ||||| ||||||||||| | |  |  ||| ||| |||||||||| |||||||||    
T  31290660 tattaaacaaccagatctttactcaaaacgaacagagactggtgagactgagaatacaaacaagaggcactatatgtagacggaacacccgaaaataaac 31290759  T
Q  670 accctaaaaacactccttaggaca 693  Q
    ||| ||||||||| ||| ||||||    
T  31290760 accataaaaacacccctgaggaca 31290783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 558 - 632
Target Start/End: Original strand, 7451888 - 7451962
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaa 632  Q
    |||| ||||| |||||||||||  |||||| ||||||||||||| | ||| |||||||||||| |||||||||||    
T  7451888 aacagcaaatattattaaacaactagatctctgctcaagacgaacagagaccggtgaaactgagaatacaaacaa 7451962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 558 - 678
Target Start/End: Complemental strand, 9557362 - 9557241
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacg-aataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaaca 656  Q
    ||||||||||||| |||||||| ||||||| ||||||||||| || | ||| ||||||| |||| |||||||| ||||     ||||||||  || ||||    
T  9557362 aacaacaaattttgttaaacaaccagatctctgctcaagacgaaacagagaccggtgaatctgagaatacaaataaaaaacatcgtatataaacgaaaca 9557263  T
Q  657 cccaaaaataaacaccctaaaa 678  Q
    ||| |||||||||||| |||||    
T  9557262 cccgaaaataaacaccttaaaa 9557241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 563 - 679
Target Start/End: Complemental strand, 49820605 - 49820488
Alignment:
Q  563 caaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacaccc-aa 661  Q
    ||||||||||| ||||||| ||||| ||||||||||  ||| ||||||||||| | || ||||||||| |||   | | ||| ||||||||||||||  |    
T  49820605 caaattttatttaacaatctgatctctgctcaagacagatagagatcggtgaatcagagaatacaaaccaaagacgtcatatgtaggcggaacacccgga 49820506  T
Q  662 aaataaacaccctaaaaa 679  Q
    ||||||||||| ||||||    
T  49820505 aaataaacaccataaaaa 49820488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 558 - 678
Target Start/End: Complemental strand, 27905885 - 27905766
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    ||||||||| |||||||||||| ||||||  ||||||||| ||||| ||| ||||||| | || | ||||||| | | | | |||||||||| ||||||     
T  27905885 aacaacaaaatttattaaacaaccagatccctgctcaagaagaatagagaccggtgaatcagagactacaaactagaggcgtcgtatataggtggaaca- 27905787  T
Q  658 ccaaaaataaacaccctaaaa 678  Q
    | ||||||||||||| |||||    
T  27905786 caaaaaataaacaccataaaa 27905766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 562 - 668
Target Start/End: Complemental strand, 46603810 - 46603705
Alignment:
Q  562 acaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacccaa 661  Q
    ||||||||||||||| ||| |||||  | ||||||||||||||||| |||||   | || |||||||||||||   |  ||||||||||||||||||| |    
T  46603810 acaaattttattaaa-aatgagatccctactcaagacgaataaagaccggtggttcagataatacaaacaaaagacgttgtatataggcggaacacccga 46603712  T
Q  662 aaataaa 668  Q
    |||||||    
T  46603711 aaataaa 46603705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 589 - 687
Target Start/End: Original strand, 376464 - 376564
Alignment:
Q  589 tgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacccaaaaataaacaccct--aaaaacactcct 686  Q
    ||||||||||||| | |||  | |||||| || ||||||||  ||| | ||||||||||||| |||||||  ||||||||||||||  ||||||||||||    
T  376464 tgctcaagacgaacagagacggatgaaacagagaatacaaagtaaaggcgccgtatataggcagaacacctgaaaataaacaccctccaaaaacactcct 376563  T
Q  687 t 687  Q
    |    
T  376564 t 376564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 638 - 678
Target Start/End: Complemental strand, 16149150 - 16149110
Alignment:
Q  638 gccgtatataggcggaacacccaaaaataaacaccctaaaa 678  Q
    |||||||||||||||||||| | ||||||||||||||||||    
T  16149150 gccgtatataggcggaacacgcgaaaataaacaccctaaaa 16149110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 560 - 667
Target Start/End: Complemental strand, 17034045 - 17033939
Alignment:
Q  560 caacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacaccc 659  Q
    |||||||||||| |||| || || |||| ||||||||| ||| | ||| ||||||  | || ||||||||||||| | | |||||||| |||||||||||    
T  17034045 caacaaattttagtaaa-aaccaaatctatgctcaagatgaacatagaccggtgattcagataatacaaacaaaaggcgtcgtatataagcggaacaccc 17033947  T
Q  660 aaaaataa 667  Q
     |||||||    
T  17033946 gaaaataa 17033939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 563 - 617
Target Start/End: Complemental strand, 10605144 - 10605090
Alignment:
Q  563 caaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaac 617  Q
    ||||||||||| ||||||||||||  ||||||||||||||| |||  ||||||||    
T  10605144 caaattttatttaacaatcagatccctgctcaagacgaatagagactggtgaaac 10605090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 603
Target Start/End: Complemental strand, 34159097 - 34159052
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaata 603  Q
    ||||||||| |||||||||||||||||||  |||||||||| ||||    
T  34159097 aacaacaaaatttattaaacaatcagatccctgctcaagacaaata 34159052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 623 - 684
Target Start/End: Complemental strand, 42374573 - 42374512
Alignment:
Q  623 atacaaacaaaatgtgccgtatataggcggaacacccaaaaataaacaccctaaaaacactc 684  Q
    |||||||||||  | ||| |||||||||||||||||| |||||||||| | |||| ||||||    
T  42374573 atacaaacaaagggcgccatatataggcggaacacccgaaaataaacatcataaagacactc 42374512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 4e-37; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 558 - 693
Target Start/End: Original strand, 26405175 - 26405310
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||||||||||||||||||||| ||||| | ||||||||||||| ||||| |||||||||||| ||||||||||||| | | ||||||||| ||||||||    
T  26405175 aacaacaaattttattaaacaaccagatttctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaggcgtcgtatatagtcggaacac 26405274  T
Q  658 ccaaaaataaacaccctaaaaacactccttaggaca 693  Q
    || |||||||||||| ||||||||| ||| ||||||    
T  26405275 ccgaaaataaacaccttaaaaacacccctgaggaca 26405310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 563 - 682
Target Start/End: Complemental strand, 25992450 - 25992331
Alignment:
Q  563 caaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacccaaa 662  Q
    ||||| ||||||||||| ||||||| ||||||||||||| | ||| |||||||| ||| ||||||||||||| | |||||||||| ||||||||||| |     
T  25992450 caaatattattaaacaaccagatctctgctcaagacgaacagagaccggtgaaaatgataatacaaacaaaaggcgccgtatatatgcggaacacccgac 25992351  T
Q  663 aataaacaccctaaaaacac 682  Q
    ||||||||||||||||||||    
T  25992350 aataaacaccctaaaaacac 25992331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 558 - 682
Target Start/End: Original strand, 7194928 - 7195052
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||| ||||||||||||||||| ||||||  | ||||||||||| |||||||| ||||||||| |||| | |||||||| | ||| |||| ||||||||     
T  7194928 aacagcaaattttattaaacaaccagatccctactcaagacgaacaaagatcgatgaaactgagaatatagacaaaatgagtcgtttatatgcggaacat 7195027  T
Q  658 ccaaaaataaacaccctaaaaacac 682  Q
    |||||||||||||||||||||||||    
T  7195028 ccaaaaataaacaccctaaaaacac 7195052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 558 - 691
Target Start/End: Complemental strand, 8297924 - 8297792
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||| ||||||||||| ||||||||||||| | ||||||||||| | ||| |||||||||||| |||||||| |||| | |  ||| |||||||||||||    
T  8297924 aacagcaaattttattgaacaatcagatctctactcaagacgaacagagaccggtgaaactgagaatacaaa-aaaaggcgttgtacataggcggaacac 8297826  T
Q  658 ccaaaaataaacaccctaaaaacactccttagga 691  Q
    |  |||||| ||||||||||||||| ||| ||||    
T  8297825 ctgaaaatacacaccctaaaaacacccctgagga 8297792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 558 - 679
Target Start/End: Original strand, 26045590 - 26045711
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    ||||| ||||||||||||||||  |||||  ||||||| ||||| | ||| |||||||  |||  |||||||||||| | ||||||||||| |||||||     
T  26045590 aacaataaattttattaaacaactagatcaatgctcaaaacgaacagagaccggtgaagttgagcatacaaacaaaaggcgccgtatatagacggaacat 26045689  T
Q  658 ccaaaaataaacaccctaaaaa 679  Q
    ||||||||||||||||||||||    
T  26045690 ccaaaaataaacaccctaaaaa 26045711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 691 - 808
Target Start/End: Original strand, 14302221 - 14302338
Alignment:
Q  691 acacgtcaccacctaaaacagacatttttccgaaaaatgaccattataaaaatgatatccaacaccatctgtcgtcactactcaccccctaagaaaaaca 790  Q
    ||||||||||||||||||||||    ||  ||||||  ||||| | |||||| |||||||||||||| |||||||||||||||| |||| |||||||| |    
T  14302221 acacgtcaccacctaaaacagattccttcgcgaaaac-gaccaatgtaaaaacgatatccaacaccacctgtcgtcactactcatccccaaagaaaaata 14302319  T
Q  791 cccctc-aaattaaactcc 808  Q
    |||||| ||||||||||||    
T  14302320 cccctcaaaattaaactcc 14302338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 558 - 672
Target Start/End: Complemental strand, 8731391 - 8731278
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||| |||||||||||||| |||||||||  |||||||||| || | | | ||||||  | || ||||||||||||| | ||||||||||| || |||||    
T  8731391 aacagcaaattttattaaa-aatcagatccctgctcaagacaaacagaaaccggtgattcagagaatacaaacaaaaggcgccgtatatagacgaaacac 8731293  T
Q  658 ccaaaaataaacacc 672  Q
    |||||||||||||||    
T  8731292 ccaaaaataaacacc 8731278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 560 - 682
Target Start/End: Original strand, 7391626 - 7391750
Alignment:
Q  560 caacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaa--caaaatgtgccgtatataggcggaacac 657  Q
    |||||||||||||||||  ||||||||| || |||||||||| | ||| |||||||| ||| ||||||||    |||||||| |||||||||||||| ||    
T  7391626 caacaaattttattaaatcatcagatctctgttcaagacgaacagagaccggtgaaaatgagaatacaaagtgtaaatgtgctgtatataggcggaaaac 7391725  T
Q  658 ccaaaaataaacaccctaaaaacac 682  Q
    |  ||| || ||| |||||||||||    
T  7391726 ctgaaagtacacaacctaaaaacac 7391750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 563 - 679
Target Start/End: Original strand, 13953878 - 13953996
Alignment:
Q  563 caaattttattaaacaatcagatctttgctcaagacgaataaagatcggtg--aaactgaaaatacaaacaaaatgtgccgtatataggcggaacaccca 660  Q
    ||||||||||| |||   ||| ||| ||||||||||||| | ||| |||||  ||||||| | ||||||| ||| | |||||||||||||||||||||      
T  13953878 caaattttatttaacctccaggtctctgctcaagacgaacagagaccggtgtgaaactgagagtacaaactaaaggcgccgtatataggcggaacacctg 13953977  T
Q  661 aaaataaacaccctaaaaa 679  Q
    |||||||||||| ||||||    
T  13953978 aaaataaacaccttaaaaa 13953996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 567 - 684
Target Start/End: Complemental strand, 5187387 - 5187270
Alignment:
Q  567 ttttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacccaaaaata 666  Q
    |||||||||||||  | |||| ||||||||| ||  | |||||||||||| ||| ||||||||||||| | |||| ||||||  | | ||||| ||||||    
T  5187387 ttttattaaacaactaaatctctgctcaagaagagcagagatcggtgaaattgagaatacaaacaaaaggcgccgcatatagatgaagcacccgaaaata 5187288  T
Q  667 aacaccctaaaaacactc 684  Q
    |||||| ||||| |||||    
T  5187287 aacaccataaaagcactc 5187270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 638 - 679
Target Start/End: Complemental strand, 30097707 - 30097666
Alignment:
Q  638 gccgtatataggcggaacacccaaaaataaacaccctaaaaa 679  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  30097707 gccgtatataggcggaacacccgaaaataaacaccctaaaaa 30097666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 558 - 682
Target Start/End: Original strand, 33109829 - 33109951
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||| ||||| |||||||||||||| |||| |||| |||||||| | | || ||||||||||| |||||||||||||   ||  | ||||| || |||||    
T  33109829 aacagcaaatattattaaacaatcaaatctctgcttaagacgaacataaattggtgaaactgagaatacaaacaaaagacgc--tgtatagccgaaacac 33109926  T
Q  658 ccaaaaataaacaccctaaaaacac 682  Q
    || |||||||||||  |||||||||    
T  33109927 ccgaaaataaacactttaaaaacac 33109951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 558 - 666
Target Start/End: Complemental strand, 23426754 - 23426646
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||| ||||||||||| || ||||||||   ||||||||| ||| | ||| ||||||  | || |||||||  |||| ||||||||||||||||||||||    
T  23426754 aacagcaaattttatttaaaaatcagattgctgctcaagaggaacagagaccggtgattcagagaatacaactaaaaggtgccgtatataggcggaacac 23426655  T
Q  658 ccaaaaata 666  Q
    || ||||||    
T  23426654 ccgaaaata 23426646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 692 - 807
Target Start/End: Original strand, 26045742 - 26045856
Alignment:
Q  692 cacgtcaccacctaaaacagacatttttccgaaaaatgaccattataaaaatgatatccaacaccatctgtcgtcactactcaccccctaagaaaaacac 791  Q
    |||||||||||||||||||||| || |||   ||||||||||   |||||| || ||||||||||  |  ||||||||||||| |||| |||||||||||    
T  26045742 cacgtcaccacctaaaacagac-ttcttcatgaaaatgaccacggtaaaaacgaaatccaacacctcccatcgtcactactca-ccccaaagaaaaacac 26045839  T
Q  792 ccctc-aaattaaactc 807  Q
    ||||| |||||||||||    
T  26045840 ccctcaaaattaaactc 26045856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 563 - 682
Target Start/End: Original strand, 14302076 - 14302195
Alignment:
Q  563 caaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacccaaa 662  Q
    |||||||||||| | || ||||||  || | ||||| || ||| ||| |||||| |||||||| |||||| |   |||||||||||  ||||||||||||    
T  14302076 caaattttattagagaaccagatccctgtttaagacaaacaaaaatcagtgaaattgaaaatataaacaagagacgccgtatatagaaggaacacccaaa 14302175  T
Q  663 aataaacaccctaaaaacac 682  Q
    |||||| | |||||||||||    
T  14302176 aataaaaatcctaaaaacac 14302195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 589 - 648
Target Start/End: Original strand, 21391936 - 21391995
Alignment:
Q  589 tgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatatag 648  Q
    ||||||||||||| ||||| |||||||||||| ||||||||| ||| |||||| ||||||    
T  21391936 tgctcaagacgaacaaagaccggtgaaactgagaatacaaactaaaggtgccgcatatag 21391995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 589 - 679
Target Start/End: Complemental strand, 7682976 - 7682886
Alignment:
Q  589 tgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacccaaaaataaacaccctaaaaa 679  Q
    ||||||||||||||  |||  ||||||||||| ||||||||  ||| | | ||||||||||||||||| || ||||||| ||||| |||||    
T  7682976 tgctcaagacgaatgtagacgggtgaaactgagaatacaaattaaaggcgtcgtatataggcggaacatccgaaaataagcacccaaaaaa 7682886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 591 - 681
Target Start/End: Original strand, 33258549 - 33258639
Alignment:
Q  591 ctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacccaaaaataaacaccctaaaaaca 681  Q
    ||||| ||||| | ||| |||||||| || ||||||||| |||| | |||||||||| | | ||||||| |||||||||||| ||||||||    
T  33258549 ctcaaaacgaacagagaccggtgaaattggaaatacaaataaaaggcgccgtatatatgtgaaacacccgaaaataaacaccataaaaaca 33258639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 636 - 682
Target Start/End: Complemental strand, 37108175 - 37108129
Alignment:
Q  636 gtgccgtatataggcggaacacccaaaaataaacaccctaaaaacac 682  Q
    |||| |||||||||||||||| | |||||||||||||||||||||||    
T  37108175 gtgctgtatataggcggaacatcaaaaaataaacaccctaaaaacac 37108129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 558 - 655
Target Start/End: Original strand, 17853106 - 17853203
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaac 655  Q
    |||||||||||||||| || || ||||||  ||||||||| ||||| | | ||||||  | |||||||||||| ||||| |||||||||  |||||||    
T  17853106 aacaacaaattttatttaaaaaccagatccctgctcaagatgaatataaaccggtgattcagaaaatacaaactaaatgcgccgtatatgtgcggaac 17853203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 624 - 672
Target Start/End: Complemental strand, 31742552 - 31742504
Alignment:
Q  624 tacaaacaaaatgtgccgtatataggcggaacacccaaaaataaacacc 672  Q
    ||||||||||| | |||||||||||||||||||||| |||| |||||||    
T  31742552 tacaaacaaaaggcgccgtatataggcggaacacccgaaaacaaacacc 31742504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 679
Target Start/End: Original strand, 4914128 - 4914247
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||||||| ||||||||||| || ||||| | | |||||||||||| | | |||||||||||| ||||| ||  ||| ||| |||||||| ||||||||     
T  4914128 aacaacaatttttattaaaccattagatcct-gttcaagacgaatagata-cggtgaaactgagaatactaattaaaggtgtcgtatatatgcggaacat 4914225  T
Q  658 ccaaaaataaacaccctaaaaa 679  Q
    || | ||||||| | |||||||    
T  4914226 ccgataataaaccctctaaaaa 4914247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 561 - 682
Target Start/End: Complemental strand, 10175130 - 10175010
Alignment:
Q  561 aacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacaccca 660  Q
    ||||||||||||||| ||| |||||| || ||||| | ||| | ||| |||||||| | | ||||||||||||| |   |||||||||||  |||| ||     
T  10175130 aacaaattttattaatcaaccagatccttactcaaaatgaacagagaccggtgaaattaagaatacaaacaaaaggcatcgtatataggcaaaaca-cct 10175032  T
Q  661 aaaataaacaccctaaaaacac 682  Q
     ||||||||| |||||||||||    
T  10175031 gaaataaacatcctaaaaacac 10175010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 611 - 679
Target Start/End: Complemental strand, 27713474 - 27713405
Alignment:
Q  611 gtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacaccc-aaaaataaacaccctaaaaa 679  Q
    ||||||||||  |||||||| ||| | ||| |||||||||||||||||| |||||||||| || ||||||    
T  27713474 gtgaaactgaggatacaaacgaaaggcgccatatataggcggaacacccgaaaaataaactccataaaaa 27713405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 6e-33; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 558 - 682
Target Start/End: Original strand, 50518716 - 50518840
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||| ||||||||||||||||||  ||||  ||||||||||||| | |||  ||||||||||| ||||||||||||| ||| ||||||||||||||||||    
T  50518716 aacatcaaattttattaaacaatttgatccctgctcaagacgaacagagactggtgaaactgagaatacaaacaaaaggtgtcgtatataggcggaacac 50518815  T
Q  658 ccaaaaataaacaccctaaaaacac 682  Q
    || ||||||||||||||||||||||    
T  50518816 ccgaaaataaacaccctaaaaacac 50518840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 558 - 713
Target Start/End: Complemental strand, 14893384 - 14893229
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||||||||||||||||||||| |||||   ||||||||| ||| | |||  |||||||| || | |||||||||||   ||||||||||||||||||||    
T  14893384 aacaacaaattttattaaacaaccagataactgctcaagatgaacagagactggtgaaaccgagagtacaaacaaaagacgccgtatataggcggaacac 14893285  T
Q  658 ccaaaaataaacaccctaaaaacactccttaggacacgtcaccacctaaaacagac 713  Q
    |  ||||||||||||||||||||| || | |||| |||||||||||||||||||||    
T  14893284 ctgaaaataaacaccctaaaaacattcatgaggatacgtcaccacctaaaacagac 14893229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 564 - 671
Target Start/End: Original strand, 14280182 - 14280289
Alignment:
Q  564 aaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacccaaaa 663  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||  ||| | |||||||||||||||||||||| |||    
T  14280182 aaatattattaaacaatcagatctttgctcaagacgaacaaagatcgatgaaactgataatacaaattaaaggcgccgtatataggcggaacacccgaaa 14280281  T
Q  664 ataaacac 671  Q
     |||||||    
T  14280282 gtaaacac 14280289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 558 - 678
Target Start/End: Original strand, 37998836 - 37998956
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||| |||||||||||||||||  | ||| ||| |||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||       
T  37998836 aacatcaaattttattaaacaactaaatcattgttcaagacgaataaagatcagcgaaactgagaatacaaacaaaatgtgccgtatataggcggaatgt 37998935  T
Q  658 ccaaaaataaacaccctaaaa 678  Q
    || |||||||||||| |||||    
T  37998936 ccgaaaataaacaccttaaaa 37998956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 558 - 680
Target Start/End: Original strand, 33143579 - 33143700
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||||||||||||||||||||| ||||||| |||||||| |||| | | |||||||||||||| ||||||| ||||| | | | ||||||||||||||||    
T  33143579 aacaacaaattttattaaacaaccagatctctgctcaaggcgaacataaatcggtgaaactgagaatacaaccaaaaggcgtcatatataggcggaacac 33143678  T
Q  658 ccaaaaataaacaccctaaaaac 680  Q
    || |||| |||||||| ||||||    
T  33143679 ccgaaaa-aaacacccaaaaaac 33143700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 560 - 681
Target Start/End: Complemental strand, 4171196 - 4171075
Alignment:
Q  560 caacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacaccc 659  Q
    ||||||||| ||||||||||  | |||  |||| |||||||| | ||| |||||||||||| ||||||||||||| | | |||||||||||||||||||     
T  4171196 caacaaattctattaaacaactaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacct 4171097  T
Q  660 aaaaataaacaccctaaaaaca 681  Q
     |||||||||||||||||||||    
T  4171096 gaaaataaacaccctaaaaaca 4171075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 563 - 682
Target Start/End: Complemental strand, 25648132 - 25648013
Alignment:
Q  563 caaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacccaaa 662  Q
    ||||||| ||||||||| |  |||  || |||||||||| | |||||||||||||| | ||||||||||||| | || |||||||| |||||||||| ||    
T  25648132 caaatttaattaaacaacctaatccctgttcaagacgaacagagatcggtgaaactaagaatacaaacaaaaggcgcagtatatagacggaacacccgaa 25648033  T
Q  663 aataaacaccctaaaaacac 682  Q
    ||||||||||||||||||||    
T  25648032 aataaacaccctaaaaacac 25648013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 558 - 674
Target Start/End: Complemental strand, 37123824 - 37123708
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    ||||| ||||||||||||||||| | |||| |||||||||||||   ||| || ||||||||| ||||||||||||| | | | || |||| ||||||||    
T  37123824 aacaagaaattttattaaacaattaaatctctgctcaagacgaactgagaccgatgaaactgagaatacaaacaaaaggcgtcctacatagtcggaacac 37123725  T
Q  658 ccaaaaataaacaccct 674  Q
    || ||||||||||||||    
T  37123724 ccgaaaataaacaccct 37123708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 559 - 682
Target Start/End: Original strand, 48892981 - 48893104
Alignment:
Q  559 acaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacc 658  Q
    |||| ||||||||||||||||  |||||  ||||||||||||| |||||  | ||||||||| ||||||||||||   ||||||||||| | |||||| |    
T  48892981 acaataaattttattaaacaactagatccctgctcaagacgaacaaagacagatgaaactgagaatacaaacaaacgatgccgtatataagaggaacatc 48893080  T
Q  659 caaaaataaacaccctaaaaacac 682  Q
    | |||||||||||  |||||||||    
T  48893081 cgaaaataaacactttaaaaacac 48893104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 611 - 684
Target Start/End: Complemental strand, 14194331 - 14194258
Alignment:
Q  611 gtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacccaaaaataaacaccctaaaaacactc 684  Q
    |||||||||| || |||||||||| ||||| ||||||||||||||| || |||||||||| |||||||||||||    
T  14194331 gtgaaactgagaacacaaacaaaaggtgccttatataggcggaacatccgaaaataaacatcctaaaaacactc 14194258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 563 - 682
Target Start/End: Original strand, 28937360 - 28937473
Alignment:
Q  563 caaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacccaaa 662  Q
    ||||| |||||||| || ||||||| || |||||||||| | ||| |||||||| ||| ||||||||      | |||||||||| ||||||||||| ||    
T  28937360 caaatattattaaataaccagatctctgttcaagacgaagagagaccggtgaaattgagaatacaaa------gcgccgtatataagcggaacacccgaa 28937453  T
Q  663 aataaacaccctaaaaacac 682  Q
    ||||||||||||||||||||    
T  28937454 aataaacaccctaaaaacac 28937473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 558 - 678
Target Start/End: Complemental strand, 32010241 - 32010121
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||||||||||||||| ||||| ||||||  | ||||||||||| | ||||||||||  | || ||||||| | ||| | | ||||||||||||||| ||    
T  32010241 aacaacaaattttatttaacaaccagatccctactcaagacgaacagagatcggtgattcagagaatacaacctaaaagcgtcgtatataggcggaatac 32010142  T
Q  658 ccaaaaataaacaccctaaaa 678  Q
    |  |||||||||||| |||||    
T  32010141 ctgaaaataaacaccttaaaa 32010121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 565 - 679
Target Start/End: Original strand, 25594142 - 25594256
Alignment:
Q  565 aattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacccaaaaa 664  Q
    ||||||||| || || ||||||  |||||||||| || | ||||||||||  | || |||| ||| |||||| | |||||||||||||||||||| |||     
T  25594142 aattttatttaaaaaccagatcactgctcaagacaaacagagatcggtgattcagagaataaaaataaaatgcgtcgtatataggcggaacacccgaaag 25594241  T
Q  665 taaacaccctaaaaa 679  Q
    |||||||| ||||||    
T  25594242 taaacaccataaaaa 25594256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 724 - 804
Target Start/End: Complemental strand, 4171015 - 4170937
Alignment:
Q  724 aaaatgaccattataaaaatgatatccaacaccatctgtcgtcactactcaccccctaagaaaaacacccctcaaattaaa 804  Q
    |||||||||||| || ||||||||||||||  ||||  |||||||||||||||||||   |||||||||||||||| ||||    
T  4171015 aaaatgaccattgtataaatgatatccaac--catccatcgtcactactcacccccttctaaaaacacccctcaaagtaaa 4170937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 558 - 682
Target Start/End: Complemental strand, 41039611 - 41039487
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||| |||||||||| ||||||  |||||  | || || ||||||| ||||| |||||||  |  ||||||| ||||||   | ||||||||||||||||    
T  41039611 aacagcaaattttatgaaacaaatagatccctacttaaaacgaatagagatcagtgaaaccaagcatacaaagaaaatgcatcatatataggcggaacac 41039512  T
Q  658 ccaaaaataaacaccctaaaaacac 682  Q
    |  ||||||||||||||||||||||    
T  41039511 cagaaaataaacaccctaaaaacac 41039487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 558 - 678
Target Start/End: Original strand, 46358009 - 46358129
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||||||||||||||| ||||| ||||||  ||||||||||||| | ||| | | ||  | |||||||||||| |||   || ||||||||||| |||||    
T  46358009 aacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagagattcagaaaatacaaactaaagacgctgtatataggcgaaacac 46358108  T
Q  658 ccaaaaataaacaccctaaaa 678  Q
    |  |||||||||||| |||||    
T  46358109 ctgaaaataaacaccttaaaa 46358129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 737 - 807
Target Start/End: Complemental strand, 37123640 - 37123569
Alignment:
Q  737 taaaaatgatatccaacaccatctgtcgtcactactcaccccctaagaaaaacacccct-caaattaaactc 807  Q
    |||||| |||||||||||||| |||| ||||||||||||| || ||||  ||||||||| ||||||||||||    
T  37123640 taaaaacgatatccaacaccacctgttgtcactactcaccgccaaagatgaacacccctccaaattaaactc 37123569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 590 - 664
Target Start/End: Original strand, 14754942 - 14755016
Alignment:
Q  590 gctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacccaaaaa 664  Q
    |||||||||||| ||| ||| |||||| ||| ||||||||| ||| | |||||| ||||||||||||||| ||||    
T  14754942 gctcaagacgaacaaatatcagtgaaattgagaatacaaactaaaggcgccgtacataggcggaacaccctaaaa 14755016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 593 - 665
Target Start/End: Complemental strand, 7236202 - 7236130
Alignment:
Q  593 caagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacccaaaaat 665  Q
    ||||| ||||| |||||| ||||| ||||| ||||||  ||||||||| ||||||||||||| | ||||||||    
T  7236202 caagatgaatagagatcgatgaaattgaaagtacaaatcaaatgtgccatatataggcggaatatccaaaaat 7236130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 738 - 808
Target Start/End: Complemental strand, 14879695 - 14879624
Alignment:
Q  738 aaaaatgatatccaacaccatctgtcgtcactactcaccccctaagaaaaacacccctc-aaattaaactcc 808  Q
    ||||| ||||||||||||||    ||||||||| |||||||  |||||||||||||||| ||||||||||||    
T  14879695 aaaaacgatatccaacaccacacatcgtcactattcaccccgaaagaaaaacacccctcaaaattaaactcc 14879624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 4e-31; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 558 - 659
Target Start/End: Original strand, 6726046 - 6726147
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||||||||||||||||||||| ||||||| ||||||||||||| | |||||||||||||||| |||||||||||||   ||||||||||||||||||||    
T  6726046 aacaacaaattttattaaacaaccagatctctgctcaagacgaacagagatcggtgaaactgagaatacaaacaaaaaacgccgtatataggcggaacac 6726145  T
Q  658 cc 659  Q
    ||    
T  6726146 cc 6726147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 570 - 675
Target Start/End: Original strand, 16828739 - 16828844
Alignment:
Q  570 tattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacccaaaaataaac 669  Q
    |||||||||  | ||||| || ||||||| || ||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||    
T  16828739 tattaaacatgctgatctctgttcaagacaaacaaagaccggtgaaactgagaatacaaacaaaatgcgccgtatataggcggaacacccgaaaataaac 16828838  T
Q  670 acccta 675  Q
    | ||||    
T  16828839 atccta 16828844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 564 - 693
Target Start/End: Complemental strand, 33719413 - 33719285
Alignment:
Q  564 aaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacccaaaa 663  Q
    |||||||||||||||| ||||||  ||||||||||||| | |||||||||||||||| ||||||||||||  | || | ||||||||||||||  | |||    
T  33719413 aaattttattaaacaaccagatccctgctcaagacgaacagagatcggtgaaactgagaatacaaacaaacggcgctgaatataggcggaaca-tcgaaa 33719315  T
Q  664 ataaacaccctaaaaacactccttaggaca 693  Q
     |||||||||||||||||||| | ||||||    
T  33719314 gtaaacaccctaaaaacactcatgaggaca 33719285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 558 - 682
Target Start/End: Original strand, 24324425 - 24324549
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    ||||||||||||||||||||||| | || ||||||||||||||||| |||||| ||||| ||| |||||||||||||   | | |||||||  | |||||    
T  24324425 aacaacaaattttattaaacaattatatatttgctcaagacgaatagagatcgatgaaagtgagaatacaaacaaaaaacgtcatatatagctgaaacac 24324524  T
Q  658 ccaaaaataaacaccctaaaaacac 682  Q
    || ||||||||||| ||||||||||    
T  24324525 ccgaaaataaacactctaaaaacac 24324549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 558 - 680
Target Start/End: Complemental strand, 1321246 - 1321126
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||||||||||||||||||||| || |||| | |||||||||||   |||||| ||||||||| ||||||||||  |   |||||||||||||||||| |    
T  1321246 aacaacaaattttattaaacaaccacatctctactcaagacgaacggagatcgatgaaactgagaatacaaacacga--cgccgtatataggcggaactc 1321149  T
Q  658 ccaaaaataaacaccctaaaaac 680  Q
    || ||||||||||||||||||||    
T  1321148 ccgaaaataaacaccctaaaaac 1321126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 564 - 680
Target Start/End: Original strand, 42532892 - 42533008
Alignment:
Q  564 aaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacccaaaa 663  Q
    ||||||||||| |||| || |||  ||||||||||||| | ||| ||||| |||||| ||||||| ||||| | |||||||||||||||||||||   ||    
T  42532892 aaattttattagacaaccaaatccctgctcaagacgaacagagaccggtggaactgagaatacaaccaaaaggcgccgtatataggcggaacacctggaa 42532991  T
Q  664 ataaacaccctaaaaac 680  Q
    |||||||||||||||||    
T  42532992 ataaacaccctaaaaac 42533008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 560 - 658
Target Start/End: Original strand, 47456703 - 47456800
Alignment:
Q  560 caacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacc 658  Q
    ||||||||||||||||| || ||||||| ||||||||||||| | ||| ||||||||| |||||||||||  ||| | || ||||||||||||||||||    
T  47456703 caacaaattttattaaa-aaccagatctctgctcaagacgaacagagaccggtgaaacagaaaatacaaatgaaaggcgcagtatataggcggaacacc 47456800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 745 - 808
Target Start/End: Complemental strand, 8745405 - 8745341
Alignment:
Q  745 atatccaacaccatctgtcgtcactactcaccccctaagaaaaacacccctc-aaattaaactcc 808  Q
    |||||||||||||||  |||||||||||||||||| |||||||||||||||| ||||||||||||    
T  8745405 atatccaacaccatccttcgtcactactcacccccaaagaaaaacacccctcaaaattaaactcc 8745341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 558 - 682
Target Start/End: Complemental strand, 16954942 - 16954819
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||||||||| ||||||||||  |  |||| || ||||||| || ||||| |||||||||||| | |||||| |||| |  ||||||||||||||||||     
T  16954942 aacaacaaatattattaaacatcctcatctctgttcaagacaaacaaagaccggtgaaactgaga-tacaaataaaaggcaccgtatataggcggaacat 16954844  T
Q  658 ccaaaaataaacaccctaaaaacac 682  Q
    || ||||||||||| ||||||||||    
T  16954843 ccgaaaataaacacgctaaaaacac 16954819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 558 - 674
Target Start/End: Complemental strand, 44756021 - 44755906
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    ||||||||||||||||||||||  |||||  |||||||||||||  |||||| |||||||| |  |||||||||||| | |  ||||||||||| ||||     
T  44756021 aacaacaaattttattaaacaactagatccctgctcaagacgaacgaagatcagtgaaactaagcatacaaacaaaaggcgttgtatataggcgaaaca- 44755923  T
Q  658 ccaaaaataaacaccct 674  Q
    || ||||||||||||||    
T  44755922 cctaaaataaacaccct 44755906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 563 - 667
Target Start/End: Original strand, 28534137 - 28534240
Alignment:
Q  563 caaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacccaaa 662  Q
    |||||||||||||| || || |||||||||||||||||| | ||| ||||||    || |||||||| |||| | |||||||||||||||||||||| ||    
T  28534137 caaattttattaaa-aaccaaatctttgctcaagacgaacagagaccggtgatttagagaatacaaataaaaggcgccgtatataggcggaacacccgaa 28534235  T
Q  663 aataa 667  Q
    |||||    
T  28534236 aataa 28534240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 558 - 673
Target Start/End: Complemental strand, 8745583 - 8745469
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||| ||||| |||||||||||||| |||  |  |||||||||| | |||  |||||||||||||||| |||||| |   ||||||||||||||||||||    
T  8745583 aacatcaaatattattaaacaatcaaatccctattcaagacgaacagagactggtgaaactgaaaatagaaacaagagacgccgtatataggcggaacac 8745484  T
Q  658 ccaaaaataaacaccc 673  Q
    || |||| ||||||||    
T  8745483 ccgaaaa-aaacaccc 8745469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 591 - 673
Target Start/End: Complemental strand, 36674891 - 36674809
Alignment:
Q  591 ctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacccaaaaataaacaccc 673  Q
    ||||||||||| | |||||||||||| || | |||||||||||| | | ||||||||||||||| | || |||||||||||||    
T  36674891 ctcaagacgaacagagatcggtgaaattggagatacaaacaaaaggcgtcgtatataggcggaatatccgaaaataaacaccc 36674809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 691 - 804
Target Start/End: Original strand, 24324575 - 24324685
Alignment:
Q  691 acacgtcaccacctaaaacagacatttttccgaaaaatgaccattataaaaatgatatccaac-accatctgtcgtcactactcaccccctaagaaaaac 789  Q
    |||||||||||| ||||||||||   ||  ||||||| ||||||| ||| || |||||||||| ||||||    |||||||||||||||  |||||||||    
T  24324575 acacgtcaccacttaaaacagactccttcacgaaaaacgaccattgtaagaacgatatccaaccaccatc----gtcactactcacccctaaagaaaaac 24324670  T
Q  790 acccctcaaattaaa 804  Q
    |||||||||| ||||    
T  24324671 acccctcaaaataaa 24324685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 638 - 678
Target Start/End: Complemental strand, 3478723 - 3478683
Alignment:
Q  638 gccgtatataggcggaacacccaaaaataaacaccctaaaa 678  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  3478723 gccgtatataggcggaacacccgaaaataaacaccctaaaa 3478683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 558 - 669
Target Start/End: Original strand, 9427706 - 9427816
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    ||||||||||||  ||||| || |||||| |||||||||||||| | ||||||||||    || ||||||||| |||||   ||||||||||||||| |     
T  9427706 aacaacaaatttatttaaa-aaccagatccttgctcaagacgaacagagatcggtgatttagagaatacaaactaaatgcaacgtatataggcggaatat 9427804  T
Q  658 ccaaaaataaac 669  Q
    ||||||||||||    
T  9427805 ccaaaaataaac 9427816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 558 - 634
Target Start/End: Complemental strand, 43235764 - 43235688
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaa 634  Q
    ||||||||||||||||||| || |||||   | ||||||||||| | | |||| |||||||||||||||||| ||||    
T  43235764 aacaacaaattttattaaagaaccagattcctactcaagacgaacataaatcgatgaaactgaaaatacaaataaaa 43235688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 730 - 792
Target Start/End: Original strand, 42533074 - 42533136
Alignment:
Q  730 accattataaaaatgatatccaacaccatctgtcgtcactactcaccccctaagaaaaacacc 792  Q
    |||||| ||||||||| |||||| |||| |  |||||||||||| ||||| ||||||||||||    
T  42533074 accattgtaaaaatgaaatccaataccacccatcgtcactactcgcccccaaagaaaaacacc 42533136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 638 - 679
Target Start/End: Original strand, 26385864 - 26385904
Alignment:
Q  638 gccgtatataggcggaacacccaaaaataaacaccctaaaaa 679  Q
    |||||||||||||||||||||| |||||||||||| ||||||    
T  26385864 gccgtatataggcggaacaccc-aaaataaacaccataaaaa 26385904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 5e-27; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 560 - 674
Target Start/End: Complemental strand, 42719608 - 42719494
Alignment:
Q  560 caacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacaccc 659  Q
    ||||||||||||||||||||||| |||  ||||||||||||||| ||| |||||||||||| |||||||||||||   |||||||||| |||||| |||     
T  42719608 caacaaattttattaaacaatcaaatccctgctcaagacgaatagagaccggtgaaactgagaatacaaacaaaagacgccgtatataagcggaaaacct 42719509  T
Q  660 aaaaataaacaccct 674  Q
     ||||||||||||||    
T  42719508 gaaaataaacaccct 42719494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 558 - 693
Target Start/End: Original strand, 16832646 - 16832782
Alignment:
Q  558 aacaacaaattttattaaa-caatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaaca 656  Q
    ||||||||||||||||||| ||| |||| |  | |||||||| || | | |||||||||||||| ||||||||||||| | || | ||||||||||||||    
T  16832646 aacaacaaattttattaaaacaaccagaccccttctcaagacaaacagaaatcggtgaaactgagaatacaaacaaaaggcgctgcatataggcggaaca 16832745  T
Q  657 cccaaaaataaacaccctaaaaacactccttaggaca 693  Q
    || ||||||||||||||||||||| ||||| ||||||    
T  16832746 ccaaaaaataaacaccctaaaaactctcctgaggaca 16832782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 558 - 677
Target Start/End: Original strand, 41117595 - 41117714
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    ||||||||||||||||||||||  |||||| ||||||||||||| | |||  ||||||| ||| | ||||||||| | |   ||||||||||||||||||    
T  41117595 aacaacaaattttattaaacaactagatctctgctcaagacgaacagagacaggtgaaattgagactacaaacaagaggcatcgtatataggcggaacac 41117694  T
Q  658 ccaaaaataaacaccctaaa 677  Q
    || |||||||||||||||||    
T  41117695 ccgaaaataaacaccctaaa 41117714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 563 - 679
Target Start/End: Complemental strand, 28967323 - 28967208
Alignment:
Q  563 caaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacccaaa 662  Q
    ||||||||||| || || ||||| | ||||||||||||| | ||||||||||||| || ||||||||| ||| | || ||||||||||||||||||  ||    
T  28967323 caaattttatttaa-aaccagatttctgctcaagacgaacagagatcggtgaaacagataatacaaacgaaaggcgctgtatataggcggaacacctgaa 28967225  T
Q  663 aataaacaccctaaaaa 679  Q
    |||||||||||||||||    
T  28967224 aataaacaccctaaaaa 28967208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 589 - 673
Target Start/End: Complemental strand, 48098729 - 48098645
Alignment:
Q  589 tgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacccaaaaataaacaccc 673  Q
    |||||||||||||   ||||||||||||||||||||||||||||||   || ||||||||||||||||||| |||||||||||||    
T  48098729 tgctcaagacgaacggagatcggtgaaactgaaaatacaaacaaaagacgcagtatataggcggaacacccgaaaataaacaccc 48098645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 558 - 664
Target Start/End: Complemental strand, 52009279 - 52009173
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||| ||||||||||||||| | ||||||  ||| ||||||||||| ||||||||||||||||  || |||||| || | ||||||||||||||||||||    
T  52009279 aacagcaaattttattaaactaccagatccctgcccaagacgaatagagatcggtgaaactgagcatgcaaacataaggcgccgtatataggcggaacac 52009180  T
Q  658 ccaaaaa 664  Q
    || ||||    
T  52009179 cctaaaa 52009173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 558 - 648
Target Start/End: Complemental strand, 9262897 - 9262807
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatatag 648  Q
    |||| ||||||||||||||||| || |||   |||||||||||| ||||| || ||||||||| ||||||||||||| | |||||||||||    
T  9262897 aacagcaaattttattaaacaaccaaatccccgctcaagacgaacaaagaccgatgaaactgagaatacaaacaaaaggcgccgtatatag 9262807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 558 - 668
Target Start/End: Complemental strand, 12296627 - 12296518
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||| ||||||||||| || || ||||||| ||||||| ||||||| ||| || |||  | || ||||||||| ||||||| |||||| |||| ||||||    
T  12296627 aacagcaaattttatttaa-aaccagatctctgctcaaaacgaatagagaccgatgattcagagaatacaaactaaatgtgtcgtatacaggcagaacac 12296529  T
Q  658 ccaaaaataaa 668  Q
    |||||||||||    
T  12296528 ccaaaaataaa 12296518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 558 - 679
Target Start/End: Complemental strand, 49747982 - 49747861
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||| ||||||||||||||||| || ||  | |||||||||||||| |||  ||||||| | |  ||||||||||||     |||||||| ||||||||     
T  49747982 aacatcaaattttattaaacaaccatattctcgctcaagacgaatagagactggtgaaatttagcatacaaacaaaagacatcgtatatatgcggaacat 49747883  T
Q  658 ccaaaaataaacaccctaaaaa 679  Q
    ||||||||||||||| ||||||    
T  49747882 ccaaaaataaacaccataaaaa 49747861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 559 - 679
Target Start/End: Original strand, 2061460 - 2061580
Alignment:
Q  559 acaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacc 658  Q
    |||||||||||||||||||| |||||||  ||| ||||||||| | | |  | ||||||||| ||||||||||| | ||   |||||||||||||||| |    
T  2061460 acaacaaattttattaaacagtcagatccctgcccaagacgaacagaaactgatgaaactgagaatacaaacaagaggtcttgtatataggcggaacatc 2061559  T
Q  659 caaaaataaacaccctaaaaa 679  Q
      | ||||||||| |||||||    
T  2061560 tgataataaacacactaaaaa 2061580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 721 - 807
Target Start/End: Original strand, 16832826 - 16832913
Alignment:
Q  721 cgaaaaatgaccattataaaaatgatatccaacaccatctgtcgtcactactcaccccctaagaaaaacacccctc-aaattaaactc 807  Q
    ||||||| ||||  | |||||| |||||||||||||| | ||||||||||||||||||  |  ||||||||||||| |||||||||||    
T  16832826 cgaaaaacgaccgctgtaaaaaagatatccaacaccacccgtcgtcactactcaccccaaagaaaaaacacccctcaaaattaaactc 16832913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 592 - 682
Target Start/End: Complemental strand, 25754295 - 25754205
Alignment:
Q  592 tcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacccaaaaataaacaccctaaaaacac 682  Q
    |||||||||| ||||| | ||  |||||| |||||||| |||| | ||||||||||| ||||||| |  |||||||||||| |||||||||    
T  25754295 tcaagacgaacaaagaccagtataactgagaatacaaataaaaagcgccgtatatagacggaacatctgaaaataaacaccataaaaacac 25754205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 558 - 668
Target Start/End: Original strand, 35947934 - 35948044
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||| ||||| ||||||||||| |||||| ||||| |||||||| | | |   ||||| |||| |||||||||||||   ||| |||||| |||||||||    
T  35947934 aacatcaaatattattaaacaaccagatccttgcttaagacgaacatatactagtgaatctgagaatacaaacaaaagacgccatatataagcggaacac 35948033  T
Q  658 ccaaaaataaa 668  Q
    || ||||||||    
T  35948034 ccgaaaataaa 35948044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 724 - 785
Target Start/End: Complemental strand, 19673370 - 19673309
Alignment:
Q  724 aaaatgaccattataaaaatgatatccaacaccatctgtcgtcactactcaccccctaagaa 785  Q
    |||||||||| | |||||   ||||||||||||||| ||||||||||||||||||| |||||    
T  19673370 aaaatgaccactgtaaaagcaatatccaacaccatccgtcgtcactactcacccccaaagaa 19673309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 724 - 785
Target Start/End: Original strand, 19815031 - 19815092
Alignment:
Q  724 aaaatgaccattataaaaatgatatccaacaccatctgtcgtcactactcaccccctaagaa 785  Q
    ||||||||||   |||||||||||||||| |||||| || |||||||||||||||| |||||    
T  19815031 aaaatgaccacggtaaaaatgatatccaataccatccgttgtcactactcacccccaaagaa 19815092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 762 - 799
Target Start/End: Complemental strand, 25753407 - 25753370
Alignment:
Q  762 tcgtcactactcaccccctaagaaaaacacccctcaaa 799  Q
    |||||||||||||||||| |||||||||||||||||||    
T  25753407 tcgtcactactcacccccaaagaaaaacacccctcaaa 25753370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 563 - 658
Target Start/End: Original strand, 21983507 - 21983601
Alignment:
Q  563 caaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacc 658  Q
    |||||||||||||| |||||||||  ||||||||||||| | ||| || |||||  ||||||| |||  ||| | ||| |||||||||||||||||    
T  21983507 caaattttattaaa-aatcagatccctgctcaagacgaacagagaccgatgaaatagaaaatataaatgaaaagcgccatatataggcggaacacc 21983601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 558 - 677
Target Start/End: Original strand, 38636861 - 38636979
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||| ||||||||||||||||| ||| ||   | ||| |||||| | ||| |||||||| ||| | ||||||||| | | ||||||| ||||||||||||    
T  38636861 aacagcaaattttattaaacaaccaggtccccgttcaggacgaacagagaccggtgaaaatgagactacaaacaagaggcgccgtat-taggcggaacac 38636959  T
Q  658 ccaaaaataaacaccctaaa 677  Q
    |  |||||||||||| ||||    
T  38636960 ctgaaaataaacaccttaaa 38636979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 737 - 795
Target Start/End: Original strand, 38637056 - 38637112
Alignment:
Q  737 taaaaatgatatccaacaccatctgtcgtcactactcaccccctaagaaaaacacccct 795  Q
    |||||||||||||||||  || |  ||||||||||||||||||| ||||||||||||||    
T  38637056 taaaaatgatatccaac--cacccatcgtcactactcacccccttagaaaaacacccct 38637112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 563 - 680
Target Start/End: Complemental strand, 38930237 - 38930120
Alignment:
Q  563 caaattttattaaacaatcagatctttgctcaagacgaataa-agatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacaccc-a 660  Q
    |||||||||||||| ||||||| || |||||||||| ||  | ||| |||||||||  ||  ||||||| ||| | |||||||||||| ||||||||| |    
T  38930237 caaattttattaaa-aatcagaactctgctcaagacaaaacagagaccggtgaaacataag-tacaaacgaaaggagccgtatataggtggaacacccga 38930140  T
Q  661 aaaataaacaccctaaaaac 680  Q
    |||||||||||| |||||||    
T  38930139 aaaataaacaccataaaaac 38930120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 765 - 804
Target Start/End: Complemental strand, 49528304 - 49528265
Alignment:
Q  765 tcactactcaccccctaagaaaaacacccctcaaattaaa 804  Q
    |||||||||||||||| |||||||||||||||||| ||||    
T  49528304 tcactactcacccccttagaaaaacacccctcaaaataaa 49528265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 622 - 679
Target Start/End: Original strand, 39420727 - 39420784
Alignment:
Q  622 aatacaaacaaaatgtgccgtatataggcggaacacccaaaaataaacaccctaaaaa 679  Q
    |||| ||| |||| ||| |||||||||||||||||||| ||||| |||||| ||||||    
T  39420727 aatataaataaaaggtgtcgtatataggcggaacacccgaaaatgaacaccataaaaa 39420784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 744 - 793
Target Start/End: Original strand, 39420865 - 39420914
Alignment:
Q  744 gatatccaacaccatctgtcgtcactactcaccccctaagaaaaacaccc 793  Q
    |||||||||||||| | ||||||||||||||| ||| |||||||| ||||    
T  39420865 gatatccaacaccacccgtcgtcactactcacacccaaagaaaaagaccc 39420914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 723 - 795
Target Start/End: Complemental strand, 48098608 - 48098535
Alignment:
Q  723 aaaaatgaccattataaaaatgatatccaacaccatctgtcgtcactactcaccccctaagaaaa-acacccct 795  Q
    ||||| ||||| | |||||| |||||||| ||| | | ||||||||||||||||||| ||||||| ||||||||    
T  48098608 aaaaacgaccactgtaaaaacgatatccatcacaacccgtcgtcactactcacccccaaagaaaatacacccct 48098535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 9e-26; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 558 - 713
Target Start/End: Original strand, 41086431 - 41086589
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    ||||||||||||| ||||||||  |||||| ||||||||||||| | ||| | ||||||||||  ||||||| |||| |   |||||||||||| |||||    
T  41086431 aacaacaaattttgttaaacaactagatctctgctcaagacgaacagagaccagtgaaactgagcatacaaagaaaaagcatcgtatataggcgaaacac 41086530  T
Q  658 ccaaaaataaacaccctaaaaacactccttagg---acacgtcaccacctaaaacagac 713  Q
    || |||||||| ||||||||||||| ||| | |   |||||||||||||||||||||||    
T  41086531 ccgaaaataaataccctaaaaacacccctgaagacaacacgtcaccacctaaaacagac 41086589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 564 - 689
Target Start/End: Complemental strand, 34230648 - 34230524
Alignment:
Q  564 aaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacccaaaa 663  Q
    |||| ||||||||||| || |||| ||||||||||||| | ||||||||||| |||  |||||||||||||   ||||||||||||||||||||| ||||    
T  34230648 aaatattattaaacaaccatatctctgctcaagacgaacagagatcggtgaa-ctgcgaatacaaacaaaagacgccgtatataggcggaacaccaaaaa 34230550  T
Q  664 ataaacaccctaaaaacactccttag 689  Q
    ||||||| | ||||||||| ||||||    
T  34230549 ataaacatcgtaaaaacaccccttag 34230524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 558 - 682
Target Start/End: Complemental strand, 7696415 - 7696291
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||| ||||||||||| ||||| || |||  ||||||||| ||| | ||| || ||||| ||| ||||||||||||| |  |||||||||||||||||||    
T  7696415 aacagcaaattttattgaacaaccaaatccctgctcaagatgaacagagaccgatgaaattgagaatacaaacaaaaggaaccgtatataggcggaacac 7696316  T
Q  658 ccaaaaataaacaccctaaaaacac 682  Q
    ||||||||||||||| |||||||||    
T  7696315 ccaaaaataaacaccttaaaaacac 7696291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 591 - 693
Target Start/End: Complemental strand, 13337671 - 13337569
Alignment:
Q  591 ctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacccaaaaataaacaccctaaaaacactccttagg 690  Q
    ||||||||||| | ||| ||||||||| || ||||||||||||| | | |||||||||| ||||||||  |||||||||||||||||||||| ||| |||    
T  13337671 ctcaagacgaacagagaccggtgaaacagagaatacaaacaaaaggcgtcgtatataggtggaacacctgaaaataaacaccctaaaaacacccctgagg 13337572  T
Q  691 aca 693  Q
    |||    
T  13337571 aca 13337569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 558 - 679
Target Start/End: Complemental strand, 4975199 - 4975078
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||||||||||||||| ||| ||||| ||| ||||||||||||| | |||   |||||||| | ||||||||| ||| | | ||||||||||| ||||||    
T  4975199 aacaacaaattttatttaaccatcaggtctctgctcaagacgaacagagactagtgaaactaagaatacaaactaaaggcgtcgtatataggctgaacac 4975100  T
Q  658 ccaaaaataaacaccctaaaaa 679  Q
    || |||||||||||||| ||||    
T  4975099 ccgaaaataaacaccctgaaaa 4975078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 558 - 679
Target Start/End: Complemental strand, 4993107 - 4992986
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||||||||||||||| ||| ||||| ||| ||||||||||||| | |||   |||||||| | ||||||||| ||| | | ||||||||||| ||||||    
T  4993107 aacaacaaattttatttaaccatcaggtctctgctcaagacgaacagagactagtgaaactaagaatacaaactaaaggcgtcgtatataggctgaacac 4993008  T
Q  658 ccaaaaataaacaccctaaaaa 679  Q
    || |||||||||||||| ||||    
T  4993007 ccgaaaataaacaccctgaaaa 4992986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 558 - 678
Target Start/End: Complemental strand, 29997399 - 29997279
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||||||||||||||||||||||| | ||| || | |||||||| | ||| || ||||| |||||||| |||||||| |  ||||||||| ||||||||     
T  29997399 aacaacaaattttattaaacaatctggtctctggtaaagacgaacagagaccgatgaaattgaaaataaaaacaaaaggcaccgtatataagcggaacat 29997300  T
Q  658 ccaaaaataaacaccctaaaa 678  Q
    || |||||||||| |||||||    
T  29997299 ccgaaaataaacatcctaaaa 29997279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 558 - 668
Target Start/End: Complemental strand, 42802540 - 42802427
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatata---ggcggaa 654  Q
    |||||||||||||||||||||| |  |||  |  |||||||||| | ||||| |||||||||| ||||||||||||| ||| ||||||||   |||||||    
T  42802540 aacaacaaattttattaaacaacctaatccctattcaagacgaacagagatcagtgaaactgagaatacaaacaaaaggtgtcgtatatatacggcggaa 42802441  T
Q  655 cacccaaaaataaa 668  Q
    ||||||||||||||    
T  42802440 cacccaaaaataaa 42802427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 558 - 682
Target Start/End: Original strand, 37770280 - 37770401
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||||||||||||||| ||||   |||||  || ||||||| || | |||||||||||  ||| |||||||||||   | | ||||||||||||||||||    
T  37770280 aacaacaaattttattgaacagctagatccatgatcaagacaaacagagatcggtgaatatgagaatacaaacaa---gcgtcgtatataggcggaacac 37770376  T
Q  658 ccaaaaataaacaccctaaaaacac 682  Q
    || ||||||||||||||||||||||    
T  37770377 ccgaaaataaacaccctaaaaacac 37770401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 560 - 672
Target Start/End: Complemental strand, 15361175 - 15361063
Alignment:
Q  560 caacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacaccc 659  Q
    ||||||||||||||||| ||||| |||  ||||||||||||||| |||  |||||||| || ||||||||| ||| | ||||||||||| || |||||||    
T  15361175 caacaaattttattaaa-aatcaaatccctgctcaagacgaatagagactggtgaaacagataatacaaacgaaaggcgccgtatatagacgaaacaccc 15361077  T
Q  660 a-aaaataaacacc 672  Q
    | ||||||||||||    
T  15361076 aaaaaataaacacc 15361063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 558 - 678
Target Start/End: Original strand, 10173206 - 10173326
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||| ||||||||| | ||||| |||||   ||||||||||||| | |||||||||||||  | ||||||||| ||| | |  |||||||||||||||||    
T  10173206 aacatcaaattttacttaacaaccagattcctgctcaagacgaacagagatcggtgaaacatataatacaaactaaaagcgttgtatataggcggaacac 10173305  T
Q  658 ccaaaaataaacaccctaaaa 678  Q
    |  ||||||||||||||||||    
T  10173306 ctgaaaataaacaccctaaaa 10173326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 558 - 672
Target Start/End: Original strand, 25504516 - 25504629
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||| |||||||||||||| |||||||||  |||||||||| || | | | ||||||  | || ||||||||||||| | ||||||||||| || |||||    
T  25504516 aacagcaaattttattaaa-aatcagatccctgctcaagacaaacagaaaccggtgattcagagaatacaaacaaaaggcgccgtatatagacgaaacac 25504614  T
Q  658 ccaaaaataaacacc 672  Q
    |||||||||||||||    
T  25504615 ccaaaaataaacacc 25504629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 558 - 654
Target Start/End: Original strand, 33533371 - 33533467
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaa 654  Q
    |||||||||||||||| ||||  ||||||| ||||||||||||| | |||  ||||||||| |  |||||||||||| | ||| |||||||||||||    
T  33533371 aacaacaaattttatttaacagccagatctctgctcaagacgaacagagactggtgaaactaaggatacaaacaaaaggcgccatatataggcggaa 33533467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 558 - 682
Target Start/End: Original strand, 29139579 - 29139701
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||||||| ||||||||||||| ||||||| ||||  |||| || ||||| ||||||||||||  ||||||| |||| | | |||||||  | |||||||    
T  29139579 aacaacaatttttattaaacaaccagatctctgct--agacaaacaaagaccggtgaaactgaggatacaaataaaaggcgtcgtatattagtggaacac 29139676  T
Q  658 ccaaaaataaacaccctaaaaacac 682  Q
     | |||||||| ||| |||||||||    
T  29139677 tcgaaaataaataccttaaaaacac 29139701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 558 - 673
Target Start/End: Complemental strand, 1269905 - 1269791
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||||||||||||||| |||||||| |||| || |||||||||| | ||  |||||||| ||| ||||||||  ||| | | |||| | ||||| |||||    
T  1269905 aacaacaaattttatttaacaatcaaatctctgttcaagacgaa-agaggccggtgaaattgagaatacaaattaaaggcgtcgtacaaaggcgaaacac 1269807  T
Q  658 ccaaaaataaacaccc 673  Q
    |||| |||||||||||    
T  1269806 ccaagaataaacaccc 1269791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 762 - 804
Target Start/End: Complemental strand, 13337495 - 13337453
Alignment:
Q  762 tcgtcactactcaccccctaagaaaaacacccctcaaattaaa 804  Q
    ||||||||||||||||||| |||||||||||||||||| ||||    
T  13337495 tcgtcactactcacccccttagaaaaacacccctcaaaataaa 13337453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 563 - 669
Target Start/End: Original strand, 22884746 - 22884852
Alignment:
Q  563 caaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacccaaa 662  Q
    ||||||||||| || || || |||| ||||||||||||| ||||| ||  || |  || ||||||||| ||| | | |||||||||||||||||||| ||    
T  22884746 caaattttatttaaaaaccaaatctctgctcaagacgaacaaagaccgacgatatagagaatacaaactaaaggcgtcgtatataggcggaacacccgaa 22884845  T
Q  663 aataaac 669  Q
    |||||||    
T  22884846 aataaac 22884852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 558 - 668
Target Start/End: Original strand, 33788253 - 33788362
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||| ||||||||||| || || || |||| |||| |||||||| | ||| |||||| || || ||||||||| ||| | |||||||||| |||||||||    
T  33788253 aacagcaaattttatttaa-aaccaaatctctgctaaagacgaacagagaccggtgataccgagaatacaaactaaaggcgccgtatatatgcggaacac 33788351  T
Q  658 ccaaaaataaa 668  Q
    || ||||||||    
T  33788352 ccgaaaataaa 33788362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 558 - 668
Target Start/End: Complemental strand, 37559910 - 37559800
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||||||||||||||| || ||| |||||  || | |||||||| | |||||||||||| ||| ||||||||| ||| || ||||| | || ||||||||    
T  37559910 aacaacaaattttatttaaaaatgagatccctgtttaagacgaacagagatcggtgaaattgagaatacaaactaaaggttccgtacaaagacggaacac 37559811  T
Q  658 ccaaaaataaa 668  Q
    || | ||||||    
T  37559810 ccgagaataaa 37559800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 622 - 678
Target Start/End: Complemental strand, 2063269 - 2063212
Alignment:
Q  622 aatacaaacaaaatgtgccgtatataggcggaacaccc-aaaaataaacaccctaaaa 678  Q
    ||||||||| ||| |||||||||||||||| ||||||| ||||||||||||| |||||    
T  2063269 aatacaaacgaaaggtgccgtatataggcgaaacacccgaaaaataaacaccataaaa 2063212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 558 - 679
Target Start/End: Complemental strand, 4472397 - 4472276
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||| ||||||||||| ||||||| ||||   | |||||| ||| | || |||||||| | || ||||||||| ||| | | ||||||||| |||||||     
T  4472397 aacagcaaattttattcaacaatctgatccccgttcaagatgaacagagttcggtgaatcagagaatacaaactaaaggcgtcgtatatagacggaacat 4472298  T
Q  658 ccaaaaataaacaccctaaaaa 679  Q
    || |||||||||||| ||||||    
T  4472297 ccgaaaataaacaccataaaaa 4472276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 566 - 667
Target Start/End: Complemental strand, 10772971 - 10772871
Alignment:
Q  566 attttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacccaaaaat 665  Q
    |||||||||||||| |  |||  || |||||||||| | ||| || ||||||| | ||||||||||||| ||| |||||||| ||| |||||||||||||    
T  10772971 attttattaaacaacctaatccctgttcaagacgaacagagaccgatgaaactaagaatacaaacaaaaagtgacgtatata-gcgaaacacccaaaaat 10772873  T
Q  666 aa 667  Q
    ||    
T  10772872 aa 10772871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 564 - 669
Target Start/End: Complemental strand, 27740435 - 27740331
Alignment:
Q  564 aaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacccaaaa 663  Q
    |||||||||| || || ||||| | ||||||||||||| |||||||| |||  | || ||||||||| ||| | | |||||||||| ||||||||| |||    
T  27740435 aaattttatttaaaaaccagat-tctgctcaagacgaacaaagatcgatgattcagataatacaaactaaaggcgtcgtatataggtggaacacccgaaa 27740337  T
Q  664 ataaac 669  Q
    ||||||    
T  27740336 ataaac 27740331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 747 - 807
Target Start/End: Original strand, 37770473 - 37770534
Alignment:
Q  747 atccaacaccatctgtcgtcactactcaccccctaagaaaaacacccctc-aaattaaactc 807  Q
    ||||||||||| | ||||||||||||| ||||| ||||||||  |||||| |||||||||||    
T  37770473 atccaacaccacccgtcgtcactactcgcccccaaagaaaaaaccccctcaaaattaaactc 37770534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 558 - 679
Target Start/End: Complemental strand, 37161 - 37040
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    ||||||||| |||||||||||| | ||||  ||||||||||||| | ||| |||||||||||| |||||||||||||   || ||||||||||||||||     
T  37161 aacaacaaaatttattaaacaacctgatccctgctcaagacgaacagagaccggtgaaactgataatacaaacaaaagacgctgtatataggcggaacat 37062  T
Q  658 ccaaaaataaacaccctaaaaa 679  Q
    || |||||||||||| ||||||    
T  37061 ccgaaaataaacaccataaaaa 37040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 5e-21; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 558 - 682
Target Start/End: Original strand, 17656363 - 17656487
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||| ||||||||||||||||||||| ||  |||||| ||  |||| ||| |||||||| |||| ||| |||||||| | | ||||||||| ||||||||    
T  17656363 aacagcaaattttattaaacaatcaggtccctgctcatgagcaatagagaccggtgaaattgaacatataaacaaaaggcgtcgtatatagacggaacac 17656462  T
Q  658 ccaaaaataaacaccctaaaaacac 682  Q
    || ||||| ||||||||||||||||    
T  17656463 ccgaaaattaacaccctaaaaacac 17656487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 564 - 678
Target Start/End: Original strand, 12197708 - 12197822
Alignment:
Q  564 aaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacccaaaa 663  Q
    |||||||||| |||||  |||||| ||||||||||||||| ||||||||||| | || ||||||||| ||| | | ||| ||||||||||||||   |||    
T  12197708 aaattttatttaacaacgagatctatgctcaagacgaatagagatcggtgaatcagagaatacaaactaaaggcgtcgtctataggcggaacacgggaaa 12197807  T
Q  664 ataaacaccctaaaa 678  Q
    |||||||||||||||    
T  12197808 ataaacaccctaaaa 12197822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 564 - 678
Target Start/End: Original strand, 12442136 - 12442250
Alignment:
Q  564 aaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacccaaaa 663  Q
    |||||||||| |||||  |||||| ||||||||||||||| ||||||||||| | || ||||||||| ||| | | ||| ||||||||||||||   |||    
T  12442136 aaattttatttaacaacgagatctatgctcaagacgaatagagatcggtgaatcagagaatacaaactaaaggcgtcgtctataggcggaacacgggaaa 12442235  T
Q  664 ataaacaccctaaaa 678  Q
    |||||||||||||||    
T  12442236 ataaacaccctaaaa 12442250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 558 - 679
Target Start/End: Original strand, 8862251 - 8862370
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaaca- 656  Q
    |||||||||||||| ||| ||| ||||||  | ||||||||||| || ||||||||||  ||| | ||||||||||| | ||||||||||| |||||||     
T  8862251 aacaacaaattttactaagcaaccagatccctactcaagacgaacaa-gatcggtgaa--tgagagtacaaacaaaaggcgccgtatatagacggaacat 8862347  T
Q  657 cccaaaaataaacaccctaaaaa 679  Q
    || ||||||||||||| ||||||    
T  8862348 ccgaaaaataaacaccataaaaa 8862370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 558 - 679
Target Start/End: Original strand, 10248192 - 10248314
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||||||||||||||| ||| ||||| ||   ||||||||||||   | |||  ||||||||| ||||||| | ||| | | ||||||||||||||||||    
T  10248192 aacaacaaattttatttaaccatcaggtccgggctcaagacgaactgaaatcattgaaactgagaatacaacctaaaggcgtcgtatataggcggaacac 10248291  T
Q  658 cc-aaaaataaacaccctaaaaa 679  Q
    || ||||| ||||||| ||||||    
T  10248292 cctaaaaaaaaacaccttaaaaa 10248314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 563 - 652
Target Start/End: Original strand, 8843746 - 8843833
Alignment:
Q  563 caaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcgg 652  Q
    |||||||||||||| ||||| |||  | ||||||||||| | ||| ||||||||| |||| ||||||| ||||| |||||||||||||||    
T  8843746 caaattttattaaa-aatcaaatcccttctcaagacgaacagagaccggtgaaacagaaa-tacaaacgaaatgcgccgtatataggcgg 8843833  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 729 - 788
Target Start/End: Original strand, 12197889 - 12197948
Alignment:
Q  729 gaccattataaaaatgatatccaacaccatctgtcgtcactactcaccccctaagaaaaa 788  Q
    ||||| || ||||| |||||||| ||||| | ||||||||||||||||||| ||||||||    
T  12197889 gaccactaaaaaaacgatatccagcaccacccgtcgtcactactcacccccaaagaaaaa 12197948  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 729 - 788
Target Start/End: Original strand, 12442317 - 12442376
Alignment:
Q  729 gaccattataaaaatgatatccaacaccatctgtcgtcactactcaccccctaagaaaaa 788  Q
    ||||| || ||||| |||||||| ||||| | ||||||||||||||||||| ||||||||    
T  12442317 gaccactaaaaaaacgatatccagcaccacccgtcgtcactactcacccccaaagaaaaa 12442376  T

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Target: scaffold0063 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 589 - 682
Target Start/End: Complemental strand, 58551 - 58458
Alignment:
Q  589 tgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacacccaaaaataaacaccctaaaaacac 682  Q
    ||||||||||||| | ||| ||||||||| || |||| |||||||| | ||||||||||||  ||||||||||||||||| |||||||||||||    
T  58551 tgctcaagacgaaaagagaccggtgaaacagataatagaaacaaaaggcgccgtatataggtagaacacccaaaaataaataccctaaaaacac 58458  T

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Target: scaffold0063; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 724 - 807
Target Start/End: Complemental strand, 58400 - 58316
Alignment:
Q  724 aaaatgaccattataaaaatgatatccaacaccatctgtcgtcactactcaccccctaagaaaaacacccctc-aaattaaactc 807  Q
    |||| ||||||| ||||| ||||||||||||| | | ||||||||||||||| ||| ||||| ||||| |||| |||||||||||    
T  58400 aaaacgaccattgtaaaactgatatccaacactacccgtcgtcactactcacacccaaagaacaacactcctcaaaattaaactc 58316  T

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Target: scaffold0119 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 558 - 673
Target Start/End: Original strand, 41797 - 41911
Alignment:
Q  558 aacaacaaattttattaaacaatcagatctttgctcaagacgaataaagatcggtgaaactgaaaatacaaacaaaatgtgccgtatataggcggaacac 657  Q
    |||||||||||||||| |||||||| |||| || |||||||||| | ||  |||||||| ||| ||||||||  ||| | | |||| | ||||| |||||    
T  41797 aacaacaaattttatttaacaatcaaatctctgttcaagacgaa-agaggccggtgaaattgagaatacaaattaaaggcgtcgtacaaaggcgaaacac 41895  T
Q  658 ccaaaaataaacaccc 673  Q
    |||| |||||||||||    
T  41896 ccaagaataaacaccc 41911  T

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Target: scaffold1384 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 679
Target Start/End: Original strand, 1347 - 1400
Alignment:
Q  627 aaacaaaatgtgccgtatataggcggaacaccc-aaaaataaacaccctaaaaa 679  Q
    |||||||| | ||||||||||||| |||||||| ||||||||||||| ||||||    
T  1347 aaacaaaaggcgccgtatataggcagaacacccgaaaaataaacaccataaaaa 1400  T

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