View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5854-Insertion-3 (Length: 692)
Name: NF5854-Insertion-3
Description: NF5854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5854-Insertion-3 |
 | |
|
| [»] chr8 (5 HSPs) |
| |
|
| [»] chr3 (3 HSPs) |
| |
|
| [»] scaffold0627 (2 HSPs) |
| | |
|
| [»] scaffold0042 (5 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 390 - 692
Target Start/End: Original strand, 7094841 - 7095143
Alignment:
| Q |
390 |
ccgggatcttacattctacccacctaaaatagtttcgtcstcgaaactgacactagagaaagtcccgacaacgttcatttatttcttaactaataactct |
489 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7094841 |
ccgggatcttacattctacccacctaaaatagtttcgtcctcgaaactggcactagagaaagtctcgacaacgttcatttatttcttaactaataactct |
7094940 |
T |
|
| Q |
490 |
aatacctccaactcttattgaagtacttcaagcaacaggataatacaaattgaaagtttcctttcccacaattgaatacaggcctctaggtgcattcaga |
589 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7094941 |
aatacctccaactcttattgaagtacttcaagcaacaggataatacaaattgaaagtttcctttcccacaattgaatacaggcctctaggtgcattcaga |
7095040 |
T |
|
| Q |
590 |
cgttctgctcttgccacgtatactggatcctcctcttattatgccttgcastccctagcaagatgtcctggctcacgacaacgataacatagatcgctct |
689 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7095041 |
cgttctgctcttgccacgtatactggatcctcctcttcttatgccttgcagtccctagcaagatgtcctggctcacgacaacgataacatagatcgctct |
7095140 |
T |
|
| Q |
690 |
ttg |
692 |
Q |
| |
|
||| |
|
|
| T |
7095141 |
ttg |
7095143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 7 - 323
Target Start/End: Original strand, 7094458 - 7094774
Alignment:
| Q |
7 |
cactaactcccttcctaaaagagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacattattgtttcctctg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7094458 |
cactaactcccttcctaaaagagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacattattgttttctctg |
7094557 |
T |
|
| Q |
107 |
taaatacacgtccccatttcttgttctatactattggctgatcactatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7094558 |
taaatacacgtccccatttcttgttctatactattggctgatcattatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtg |
7094657 |
T |
|
| Q |
207 |
cacacataaaaatagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaagnnnnnnnncaaaat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7094658 |
cacacataaaaatagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaagaaaaaaaacaaaat |
7094757 |
T |
|
| Q |
307 |
gatatattatcactcaa |
323 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
7094758 |
aatatattatcactcaa |
7094774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 7 - 292
Target Start/End: Original strand, 7098191 - 7098476
Alignment:
| Q |
7 |
cactaactcccttcctaaaagagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacattattgtttcctctg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7098191 |
cactaactcccttcctaaaagagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacattattgttttctctg |
7098290 |
T |
|
| Q |
107 |
taaatacacgtccccatttcttgttctatactattggctgatcactatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7098291 |
taaatacacgtccccatttcttgttctatactattggctgatcattatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtg |
7098390 |
T |
|
| Q |
207 |
cacacataaaaatagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaag |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7098391 |
cacacataaaaatagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaag |
7098476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 391 - 440
Target Start/End: Complemental strand, 29821153 - 29821104
Alignment:
| Q |
391 |
cgggatcttacattctacccacctaaaatagtttcgtcstcgaaactgac |
440 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
29821153 |
cgggatcttacattctacctacctaaaatagtttcgtcctcgaaactgac |
29821104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 29821301 - 29821255
Alignment:
| Q |
244 |
acactatttaataattaatataatgaattttggctatatactttgaaag |
292 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||| |||||||| |
|
|
| T |
29821301 |
acactatttaa--attagtataatgaattttggctatataatttgaaag |
29821255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 390 - 692
Target Start/End: Complemental strand, 8376960 - 8376658
Alignment:
| Q |
390 |
ccgggatcttacattctacccacctaaaatagtttcgtcstcgaaactgacactagagaaagtcccgacaacgttcatttatttcttaactaataactct |
489 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8376960 |
ccgggatcttacattctacccacctaaaatagtttcgtcctcgaaactggcactagagaaagtctcgacaacgttcatttatttcttaactaataactct |
8376861 |
T |
|
| Q |
490 |
aatacctccaactcttattgaagtacttcaagcaacaggataatacaaattgaaagtttcctttcccacaattgaatacaggcctctaggtgcattcaga |
589 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8376860 |
aatacctccaactcttattgaagtacttcaagcaacaggataatacaaattgaaagtttcctttcccacaattgaatacaggcctctaggtgcattcaga |
8376761 |
T |
|
| Q |
590 |
cgttctgctcttgccacgtatactggatcctcctcttattatgccttgcastccctagcaagatgtcctggctcacgacaacgataacatagatcgctct |
689 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8376760 |
cgttctgctcttgccacgtatactggatcctcctcttcttatgccttgcagtccctagcaagatgtcctggctcacgacaacgataacatagatcgctct |
8376661 |
T |
|
| Q |
690 |
ttg |
692 |
Q |
| |
|
||| |
|
|
| T |
8376660 |
ttg |
8376658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 7 - 323
Target Start/End: Complemental strand, 8377343 - 8377027
Alignment:
| Q |
7 |
cactaactcccttcctaaaagagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacattattgtttcctctg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8377343 |
cactaactcccttcctaaaagagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacattattgttttctctg |
8377244 |
T |
|
| Q |
107 |
taaatacacgtccccatttcttgttctatactattggctgatcactatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8377243 |
taaatacacgtccccatttcttgttctatactattggctgatcattatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtg |
8377144 |
T |
|
| Q |
207 |
cacacataaaaatagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaagnnnnnnnncaaaat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8377143 |
cacacataaaaatagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaagaaaaaaaacaaaat |
8377044 |
T |
|
| Q |
307 |
gatatattatcactcaa |
323 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
8377043 |
aatatattatcactcaa |
8377027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 227 - 292
Target Start/End: Original strand, 11035898 - 11035963
Alignment:
| Q |
227 |
ataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaag |
292 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||| | ||||| |||||||||||||| |||||||| |
|
|
| T |
11035898 |
ataaatagttataggatacactatataataattagtctaatggattttggctatataatttgaaag |
11035963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 7 - 323
Target Start/End: Complemental strand, 22362570 - 22362254
Alignment:
| Q |
7 |
cactaactcccttcctaaaagagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacattattgtttcctctg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22362570 |
cactaactcccttcctaaaagagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacattattgttttctctg |
22362471 |
T |
|
| Q |
107 |
taaatacacgtccccatttcttgttctatactattggctgatcactatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22362470 |
taaatacacgtccccatttcttgttctatactattggctgatcattatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtg |
22362371 |
T |
|
| Q |
207 |
cacacataaaaatagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaagnnnnnnnncaaaat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22362370 |
cacacataaaaatagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaagaaaaaaaacaaaat |
22362271 |
T |
|
| Q |
307 |
gatatattatcactcaa |
323 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
22362270 |
aatatattatcactcaa |
22362254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 119 - 292
Target Start/End: Original strand, 41314684 - 41314857
Alignment:
| Q |
119 |
cccatttcttgttctatactattggctgatcactatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtgcacacataaaaa |
218 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41314684 |
cccatttcttgttctatactattggttgatcattatacttaattaaattaatactaacatgagataaagatgagaaaatctacacgtgcacacataaaaa |
41314783 |
T |
|
| Q |
219 |
tagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaag |
292 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41314784 |
tagtaggaataaatagttatagggtaccccatttaataattaatataatgaattttggctatatactttgaaag |
41314857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 7 - 125
Target Start/End: Complemental strand, 33885956 - 33885841
Alignment:
| Q |
7 |
cactaactcccttcctaaaa-gagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacattattgtttcctct |
105 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33885956 |
cactaactcccttcctaaaaagagtggcactatgcttaaggagtgtgaagtgaaattggcc-atgtaactaggaaaggaggttac---attgtttcctct |
33885861 |
T |
|
| Q |
106 |
gtaaatacacgtccccattt |
125 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
33885860 |
gtaaatacacgtccccattt |
33885841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 33958296 - 33958411
Alignment:
| Q |
7 |
cactaactcccttcctaaaa-gagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacattattgtttcctct |
105 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33958296 |
cactaactcccttcctaaaaagagtggcactatgcttaaggagtgtgaagtgaaattggcc-atgtaactaggaaaggaggttac---attgtttcctct |
33958391 |
T |
|
| Q |
106 |
gtaaatacacgtccccattt |
125 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
33958392 |
gtaaatacacgtccccattt |
33958411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 217 - 292
Target Start/End: Complemental strand, 33885650 - 33885575
Alignment:
| Q |
217 |
aatagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaag |
292 |
Q |
| |
|
|||| |||| ||||||| |||||||||||||||| |||||| || || |||| |||||||||||||| |||||||| |
|
|
| T |
33885650 |
aataataggcataaataattatagggtacactatctaataaatagtacaatggattttggctatataatttgaaag |
33885575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 217 - 292
Target Start/End: Original strand, 33958602 - 33958677
Alignment:
| Q |
217 |
aatagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaag |
292 |
Q |
| |
|
|||| |||| ||||||| |||||||||||||||| |||||| || || |||| |||||||||||||| |||||||| |
|
|
| T |
33958602 |
aataataggcataaataattatagggtacactatctaataaatagtacaatggattttggctatataatttgaaag |
33958677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 393 - 440
Target Start/End: Complemental strand, 33885471 - 33885424
Alignment:
| Q |
393 |
ggatcttacattctacccacctaaaatagtttcgtcstcgaaactgac |
440 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| || |||||||| |
|
|
| T |
33885471 |
ggatcttacattctacccacctaaaataatttcgtcctcaaaactgac |
33885424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 393 - 440
Target Start/End: Original strand, 33958781 - 33958828
Alignment:
| Q |
393 |
ggatcttacattctacccacctaaaatagtttcgtcstcgaaactgac |
440 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| || |||||||| |
|
|
| T |
33958781 |
ggatcttacattctacccacctaaaataatttcgtcctcaaaactgac |
33958828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 162; Significance: 3e-86; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 119 - 292
Target Start/End: Original strand, 37627819 - 37627992
Alignment:
| Q |
119 |
cccatttcttgttctatactattggctgatcactatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtgcacacataaaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37627819 |
cccatttcttgttctatactattggctgatcattatacttaattaaattgatactaacatgagataaagatgaggaattctacacgtgcacacataaaaa |
37627918 |
T |
|
| Q |
219 |
tagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaag |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37627919 |
tagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaag |
37627992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 119 - 292
Target Start/End: Original strand, 37806942 - 37807121
Alignment:
| Q |
119 |
cccatttcttgttctatactattggctgatcactatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtgcacac------a |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
37806942 |
cccatttcttgttctatactattggctgatcattatacttaattaaattgatactaacatgagataaagatgaggaattctacacgtgcacacataaaaa |
37807041 |
T |
|
| Q |
213 |
taaaaatagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaag |
292 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37807042 |
taaaaatagtaggaataaatagttataggttacactatttaataattaatataatgaattttggctatatacttcgaaag |
37807121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 390 - 440
Target Start/End: Original strand, 37807222 - 37807272
Alignment:
| Q |
390 |
ccgggatcttacattctacccacctaaaatagtttcgtcstcgaaactgac |
440 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
37807222 |
ccgggatcttacattctacccacctaaaatagtttcgtcctcaaaactgac |
37807272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 395 - 440
Target Start/End: Original strand, 37628097 - 37628142
Alignment:
| Q |
395 |
atcttacattctacccacctaaaatagtttcgtcstcgaaactgac |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
37628097 |
atcttacattctacccacctaaaatagtttcgtcctcaaaactgac |
37628142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 157; Significance: 3e-83; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 119 - 283
Target Start/End: Original strand, 19633345 - 19633509
Alignment:
| Q |
119 |
cccatttcttgttctatactattggctgatcactatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtgcacacataaaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
19633345 |
cccatttcttgttctatactattggctgatcattatacttaattaaattaatactaacatgagataaagatgagcaattctacacgtgcacacataaaaa |
19633444 |
T |
|
| Q |
219 |
tagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatata |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19633445 |
tagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatata |
19633509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 119 - 292
Target Start/End: Original strand, 1609254 - 1609431
Alignment:
| Q |
119 |
cccatttcttgttctatactattggctgatcactatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtgcacacataaaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1609254 |
cccatttcttgttctatactattggctgatcattatacttaattaaattaatactaacatgagataaagatgaggaattctacacgtgcacacataaaaa |
1609353 |
T |
|
| Q |
219 |
tagtaggaataaa----tagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaag |
292 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1609354 |
tagtaggaataaatagttagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaag |
1609431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 119 - 292
Target Start/End: Complemental strand, 2186796 - 2186619
Alignment:
| Q |
119 |
cccatttcttgttctatactattggctgatcactatacttaattaaattaatactaacatgagataaagatgagaaattctacacgtgcacacataaaaa |
218 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
2186796 |
cccatttcctgttctatactattggctgatcattatacttaattaaattaatactaacatgagataaagatgaggaattccacacgtgcacacataaaaa |
2186697 |
T |
|
| Q |
219 |
tagtaggaataaata----gttatagggtacactatttaataattaatataatgaattttggctatatactttgaaag |
292 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2186696 |
tagtaggaataaatagttagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaag |
2186619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 48189061 - 48189169
Alignment:
| Q |
15 |
cccttcctaaaagagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacattattgtttcctctgtaaataca |
114 |
Q |
| |
|
||||||||||| | ||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||| |||| || | |||||||| |
|
|
| T |
48189061 |
cccttcctaaatgggtggcactatgcttaagaagtggaaagtgaaattgacca-tgtaactaggaaaggaggttacatt---gttttcttt-taaataca |
48189155 |
T |
|
| Q |
115 |
cgtccccatttctt |
128 |
Q |
| |
|
||||||||||||| |
|
|
| T |
48189156 |
tgtccccatttctt |
48189169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 21270184 - 21270258
Alignment:
| Q |
15 |
cccttcctaaaagagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttac |
90 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||| |||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
21270184 |
cccttcctaaatgagtggcactatgcttaagaagtggaaagtgaaactgacc-atgtaactaggaaaggaggttac |
21270258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 390 - 440
Target Start/End: Original strand, 19633621 - 19633671
Alignment:
| Q |
390 |
ccgggatcttacattctacccacctaaaatagtttcgtcstcgaaactgac |
440 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
19633621 |
ccgggatcttacattctacccacctaaaatagtttcgtcctcaaaactgac |
19633671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 217 - 292
Target Start/End: Original strand, 21270495 - 21270567
Alignment:
| Q |
217 |
aatagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaag |
292 |
Q |
| |
|
|||| |||| |||||||||||||||||||| ||||||||||| | ||||| ||||||||||||||||||||||| |
|
|
| T |
21270495 |
aataataggcataaatagttatagggtacattatttaataat---tgtaatggattttggctatatactttgaaag |
21270567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 395 - 437
Target Start/End: Complemental strand, 28386680 - 28386638
Alignment:
| Q |
395 |
atcttacattctacccacctaaaatagtttcgtcstcgaaact |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28386680 |
atcttacattctacccacctaaaatagtttcgtcctcgaaact |
28386638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 217 - 292
Target Start/End: Original strand, 48189367 - 48189436
Alignment:
| Q |
217 |
aatagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaag |
292 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||| |
|
|
| T |
48189367 |
aataataggcataaatagttatagggtacactatttaat------tgtaatagattttggctatatactttgaaag |
48189436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 11993143 - 11993257
Alignment:
| Q |
7 |
cactaactcccttcctaaaagagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacattattgtttcctctg |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
11993143 |
cactaactcccttcctaaaagagtggcactaggcttaaggagtgtgaagtgaaattgacc-atgtaactaggaaaggaggttac---attgttttctctg |
11993238 |
T |
|
| Q |
107 |
taaatacacgtccccattt |
125 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
11993239 |
caaatacacgtccccattt |
11993257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 391 - 442
Target Start/End: Complemental strand, 15424814 - 15424763
Alignment:
| Q |
391 |
cgggatcttacattctacccacctaaaatagtttcgtcstcgaaactgacac |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
15424814 |
cgggatcttacattctacccacctaaaatagtttcgtcctcgaaactaacac |
15424763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 3342 - 3397
Alignment:
| Q |
228 |
taaatagttatagggtacactatttaataattaatataatgaattttggctatata |
283 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
3342 |
taaatagttataaggtacactatttaataattagtataatggattttggctatata |
3397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 2964 - 3048
Alignment:
| Q |
7 |
cactaactcccttcctaaaagagtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaaggaggttacatt |
93 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| | ||| ||||||||| | | | |||| ||||||||| ||||||||||| |
|
|
| T |
2964 |
cactaactcccttcctaaaagagtgacactatgcttatgaggtgggaagtgaaact-agccatgt-actaggaaaagaggttacatt |
3048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 19215016 - 19214968
Alignment:
| Q |
244 |
acactatttaataattaatataatgaattttggctatatactttgaaag |
292 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
19215016 |
acactatttaataattagtataatgaattttggctatataatttgaaag |
19214968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 35918850 - 35918799
Alignment:
| Q |
28 |
agtggcactatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaa |
80 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | ||| ||||||||||||| |
|
|
| T |
35918850 |
agtggcactatgcttaaggagtggaaagtgaaactaacc-atgtaactaggaa |
35918799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 391 - 438
Target Start/End: Original strand, 6590 - 6637
Alignment:
| Q |
391 |
cgggatcttacattctacccacctaaaatagtttcgtcstcgaaactg |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| || |||||| |
|
|
| T |
6590 |
cgggatcttacattctacccacctaaaatattttcgtcctcaaaactg |
6637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 391 - 438
Target Start/End: Original strand, 14002 - 14049
Alignment:
| Q |
391 |
cgggatcttacattctacccacctaaaatagtttcgtcstcgaaactg |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| || |||||| |
|
|
| T |
14002 |
cgggatcttacattctacccacctaaaatattttcgtcctcaaaactg |
14049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 6427 - 6481
Alignment:
| Q |
228 |
taaatagttatagggtacactatttaataattaatataatgaattttggctatata |
283 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| | ||||| |||||||||||||| |
|
|
| T |
6427 |
taaatagttataaggtacactatt-aataattagtgtaatggattttggctatata |
6481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 393 - 439
Target Start/End: Original strand, 6682 - 6728
Alignment:
| Q |
393 |
ggatcttacattctacccacctaaaatagtttcgtcstcgaaactga |
439 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||| | || ||||||| |
|
|
| T |
6682 |
ggatgttacattctatccacctaaaatagtttcgccctcaaaactga |
6728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 393 - 439
Target Start/End: Original strand, 14094 - 14140
Alignment:
| Q |
393 |
ggatcttacattctacccacctaaaatagtttcgtcstcgaaactga |
439 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||| | || ||||||| |
|
|
| T |
14094 |
ggatgttacattctatccacctaaaatagtttcgccctcaaaactga |
14140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 407 - 450
Target Start/End: Original strand, 19990271 - 19990314
Alignment:
| Q |
407 |
acccacctaaaatagtttcgtcstcgaaactgacactagagaaa |
450 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
19990271 |
acccacctaaaatagtttcgtcctcgaaactgacattagagaaa |
19990314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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