View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5854-Insertion-4 (Length: 640)
Name: NF5854-Insertion-4
Description: NF5854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5854-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 470; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 9 - 617
Target Start/End: Original strand, 32804780 - 32805387
Alignment:
| Q |
9 |
cctttctctcttcttaggtacactattcactcttttgattcattcgtgtgtgtgttgcttgaaatatttaaaagctaataa-cttcaattgctccaacta |
107 |
Q |
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| T |
32804780 |
cctttctctcttcttaggtacactattcactcttttgattcattcgtgtgtgtgttgcttgaaatatttaaaagctaataaacttcaattgctccaacta |
32804879 |
T |
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| Q |
108 |
ttttcttcctcttcaaagtcgcaagtaannnnnnnnnnnnnnnnnnnatgttaactcttcataggaatgagccttctttcttaattgtatttcaaatttg |
207 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
32804880 |
ttttcttcctcttcaaagtcgcaagtaattttgtttttatcttttttatgttaactcttcataggaatgagccttctttcttaattgtatttcaaatgtg |
32804979 |
T |
|
| Q |
208 |
aaaaattgaaacttctgcaaactaatgaatttcgagacgaagcttgtgtgcaacatcagaaaaatttattcatcaataaaaaatagaaatttatccaatt |
307 |
Q |
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| T |
32804980 |
aaaaattgaaacttctgcaaactaatgaatttcgagacgaagcttgtgtgcaacatcagaaaaatttattcatcaataaaaaatagaaatttatccaatt |
32805079 |
T |
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| Q |
308 |
ctaataaacatttttgaagcaaaatgtccaggacagtggttgcatttgcagctgcaatgcagcatcaagannnnnnnnagaccttggcagtataaaaact |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32805080 |
ctaataaacatttttgaagcaaaatgtccaggacagtggttgcatttgcagctgcaatgcagcatcaagattttttt--gaccttggcagtataaaaact |
32805177 |
T |
|
| Q |
408 |
aggaatacttatcgttcagtatgaactgcagtttgtcattgagaccaaatgaccttattagcgttcatagtctttttgcaaattgttttgggacnnnnnn |
507 |
Q |
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||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32805178 |
aggaataattatcgttcagtataaactgcagtttgtcattgagaccaaatgaccttattagcgttcatagtctttttgcaaattgttttgggacaaaaaa |
32805277 |
T |
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| Q |
508 |
nnnttccagtttttaacaagattattaacactagtcatgcacatacgacacttcttcaacgaattgatgaagtctctaaatagaaatccaaaacagtcaa |
607 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32805278 |
aaattccaatttttaacaagattattaacactagtcatgcacatacgacacttcttcaacgaattgatgaagtctctaaatagaaatccaaaacagtcaa |
32805377 |
T |
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| Q |
608 |
tgcactgtca |
617 |
Q |
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|||||||||| |
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| T |
32805378 |
tgcactgtca |
32805387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 32811811 - 32811879
Alignment:
| Q |
9 |
cctttctctcttcttaggta-cactattcactcttttgattcattcgtgtgtgtgttgcttgaaatatt |
76 |
Q |
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|||||||||||| ||||||| || |||||||||||||||||||||| ||||| || || ||||||||| |
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| T |
32811811 |
cctttctctcttattaggtaacaatattcactcttttgattcattcatgtgtttgatgtgtgaaatatt |
32811879 |
T |
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