View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5854-Insertion-5 (Length: 580)
Name: NF5854-Insertion-5
Description: NF5854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5854-Insertion-5 |
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Alignment Details
Target: chr3 (Bit Score: 518; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 9 - 579
Target Start/End: Original strand, 23234281 - 23234853
Alignment:
| Q |
9 |
gggataagatttgaagcaaactttatgaaatttgtacaacaactagcaggcaccttaacaaacatactaattaattaacaaaattgtaattctaatatta |
108 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23234281 |
gggataagatttgaagcaaacattatgaaatttgtacaacaactagcaggcaccttaacaaacatactaattaattaacaaaattgtaattctaatatta |
23234380 |
T |
|
| Q |
109 |
caaagtcaaatcacaaaccatccaaagctactacccataattgtgaactatataaacggtaattcatgaatggagaatcaacgaatgtacatatcaaatt |
208 |
Q |
| |
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||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23234381 |
caaagtcaaatcagaaatcatccaaagctactacccataattgtgaactatataaacggtaattcatgaatggagaatcaatgaatgtacatatcaaatt |
23234480 |
T |
|
| Q |
209 |
ttcaagttacatattcaatagacaattatgtaacaatgatgaatagagtcaatagtaattagaacaaataaaaaataaataacataaacggaaattaaca |
308 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23234481 |
ttcaagttacatattcaatagacaattaattaacaatgataaatagagtcaatagtaattagaacaaataaaaaataaataacataaacggaaattaaca |
23234580 |
T |
|
| Q |
309 |
tataagtttcaattgagtctaaatttaaagccaactaacaccacattgaaatcctcatattacaaacacggtgatatcagactctcaatacaaacttcaa |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
23234581 |
tataagtttcaattgagtctaaatttaaagccaactaacaccacattgaaatcctcatattagaaacacggtgatatcagactctcaatacaaacttcaa |
23234680 |
T |
|
| Q |
409 |
aggtaatcgaaccaatgaagtcttgtatcaagggtttcttaaaagtaccatttttgaagtcataaacggccaaatttgttatcccccgtgacacataatc |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||| |
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| T |
23234681 |
aggtaatcgaaccaatgaagtcttgtatcaagggtttcttaaaagtaccatttttgaagtcgtaaacggccaaatttgttatcccctgtgacgcataatc |
23234780 |
T |
|
| Q |
509 |
aattagcacatggccattattagaaatcc--atagtgggttggcatatgagtaatggaaaggaccattccttt |
579 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23234781 |
aattagcacatggccattattagaaatccatatagtgggttggcatatgagtaatggaaaggaccattccttt |
23234853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 331 - 561
Target Start/End: Original strand, 23230721 - 23230951
Alignment:
| Q |
331 |
atttaaagccaactaacaccacattgaaatcctcatattacaaacacggtgatatcagactctcaatacaaacttcaaaggtaatcgaaccaatgaagtc |
430 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||| |||| ||||||||| ||||||| |
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|
| T |
23230721 |
atttaaagccaaccaacaccacattgaaatcctcatattagaaacaaggtgatatcagactctcactacaaacttcataggtcatcgaaccattgaagtc |
23230820 |
T |
|
| Q |
431 |
ttgtatcaagggtttcttaaaagtaccatttttgaagtcataaacggccaaatttgttatcccccgtgacacataatcaattagcacatggccattatta |
530 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||| ||||||| |||||||| |||||||| ||| |
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|
| T |
23230821 |
ttgcatcaagggtttcttaaaagtaccatttttgaagtcataaacggccaaatttgttctcctccatgacgcataatcgattagcacttggccattgtta |
23230920 |
T |
|
| Q |
531 |
gaaatccatagtgggttggcatatgagtaat |
561 |
Q |
| |
|
|||||||||||||| ||| |||||||||||| |
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|
| T |
23230921 |
gaaatccatagtggcttgacatatgagtaat |
23230951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 89 - 571
Target Start/End: Complemental strand, 23197564 - 23197084
Alignment:
| Q |
89 |
aaattgtaattctaatattacaaagtcaaatcacaaaccatccaaagctactacccataattgtgaactatata--aacggtaattcatgaatggagaat |
186 |
Q |
| |
|
||||| |||||||||| ||| ||| |||||||| |||||||||||||| ||| |||| |||| ||||||||| ||||||||| |||||||||||| | |
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|
| T |
23197564 |
aaattttaattctaattttagaaaatcaaatcataaaccatccaaagcaact---catagttgtcaactatatataaacggtaatgcatgaatggagagt |
23197468 |
T |
|
| Q |
187 |
caacgaatgta-catatcaaattttcaa-gttacatattcaatagacaattatgtaacaatgatgaatagagtcaatagtaattagaacaaataaaaaat |
284 |
Q |
| |
|
||| |||| || ||| | | || |||| | ||||||||||||| | |||| |||||||||| |||| ||||| | |||||||||| || || ||||| |
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|
| T |
23197467 |
caaggaatctaacattgcgatttctcaaagctacatattcaatacaacattaattaacaatgataaataaagtcactcgtaattagaataagtataaaat |
23197368 |
T |
|
| Q |
285 |
aaataacataaacggaaattaacatataagtttcaattgagtctaaatttaaagccaactaacaccacattgaaatcctcatattacaaacacggtgata |
384 |
Q |
| |
|
||||||||| || |||||||| |||||||||| |||||||||||||| | | || | || |||||||||| ||| | |||| ||||| ||||||| |
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|
| T |
23197367 |
aaataacatcaaaggaaattagcatataagttgcaattgagtctaaagtacaggcgatatagcaccacattggtatc---acattagaaacaaggtgata |
23197271 |
T |
|
| Q |
385 |
tcagactctcaatacaaacttcaaaggtaatcgaaccaatgaagtcttgtatcaagggtttcttaaaagtaccatttttgaagtcataaacggccaaatt |
484 |
Q |
| |
|
||| |||||||| |||||||||| |||||||| ||| ||| |||||| |||||| |||| ||||||||||| |||||||| ||||||||||||||||| |
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|
| T |
23197270 |
tcaaactctcaacacaaacttcagaggtaatccaacacttgatgtcttgcatcaagagttttttaaaagtaccgtttttgaaatcataaacggccaaatt |
23197171 |
T |
|
| Q |
485 |
tgttatcccccgtgacacataatcaattagcacatggccattattagaaatccatagtgggttggcatatgagtaatggaaaggacc |
571 |
Q |
| |
|
| || || | ||| |||||| |||||||| ||| ||| | ||||||||||||||| |||| ||||| | |||||||||||| |
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|
| T |
23197170 |
tattctctcgaatgatgtataatcgattagcacttggtcatcctcagaaatccatagtggcttggtatatggattatggaaaggacc |
23197084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 240 - 474
Target Start/End: Original strand, 23239141 - 23239377
Alignment:
| Q |
240 |
aacaatgatgaatagagtcaatagtaattagaacaaataaaaaataaataacataaacggaaattaacatataagtt----tcaattgagtctaaattta |
335 |
Q |
| |
|
||||||||| |||| | ||||||||||||||||||| || |||||||||||| | || |||||||||||||||||| |||||||||||||||||| |
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|
| T |
23239141 |
aacaatgataaataaattcaatagtaattagaacaagtataaaataaataac--agacagaaattaacatataagttccaatcaattgagtctaaatttc |
23239238 |
T |
|
| Q |
336 |
aagccaactaacaccacattgaaatcctcatattacaaacacggtgatatcagactctcaatacaaacttcaaaggtaatcgaaccaatgaagtcttgta |
435 |
Q |
| |
|
|| || || |||||||||| || ||||| ||| ||||| |||||||||| |||||||| |||||| | | |||| || ||| || || || || | |
|
|
| T |
23239239 |
aaagcacctggtaccacattgacatactcatcttagaaacaaggtgatatcaaactctcaacacaaaccttagaggttattgaatcatagacttcatgca |
23239338 |
T |
|
| Q |
436 |
tcaagggtttcttaaaagtaccatttttgaagtcataaa |
474 |
Q |
| |
|
|||||| || |||||||||||| ||||| || ||||||| |
|
|
| T |
23239339 |
tcaaggtttccttaaaagtaccttttttaaaatcataaa |
23239377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 112 - 224
Target Start/End: Original strand, 23238969 - 23239079
Alignment:
| Q |
112 |
agtcaaatcacaaaccatccaaagctactacccataattgtgaactatataaacggtaattcatgaatggagaatcaacgaatgt-acatatcaaatttt |
210 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||| | | ||||| ||| || | |
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|
| T |
23238969 |
agtcaaatcacaatccatccaaa---actacccatacttgtgaactatataaacggtaatgtatgaatggagaatcaacgattctaacatagcaatttct |
23239065 |
T |
|
| Q |
211 |
caagttacatattc |
224 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
23239066 |
caagctacatattc |
23239079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 267 - 396
Target Start/End: Original strand, 7397853 - 7397983
Alignment:
| Q |
267 |
ttagaacaaataaaaaataaataacataaacggaaa-ttaacatataagtttcaattgagtctaaatttaaagccaactaacaccacattgaaatcctca |
365 |
Q |
| |
|
|||||| ||||| |||| |||| ||||||||||||| ||||||||||||||| ||||||||||||| || ||| || ||| ||||||| | ||||||| |
|
|
| T |
7397853 |
ttagaataaatataaaacaaatgacataaacggaaaattaacatataagtttaaattgagtctaaagttcaagtcacataataccacatctatatcctca |
7397952 |
T |
|
| Q |
366 |
tattacaaacacggtgatatcagactctcaa |
396 |
Q |
| |
|
|||| ||||| || |||| || |||||||| |
|
|
| T |
7397953 |
cattagaaacaaggagataccaaactctcaa |
7397983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 322 - 483
Target Start/End: Original strand, 23226089 - 23226250
Alignment:
| Q |
322 |
tgagtctaaatttaaagccaactaacaccacattgaaatcctcatattacaaacacggtgatatcagactctcaatacaaacttcaaaggtaatcgaacc |
421 |
Q |
| |
|
||||| ||||||| | |||| || ||||| ||||| ||||| |||| | ||| | |||||||||| |||||||| | ||||||| ||||||| | || |
|
|
| T |
23226089 |
tgagtttaaatttcacgccaggtagcaccatattgacatccttatatcagaaataaggtgatatcaaactctcaacataaacttcggaggtaatgggact |
23226188 |
T |
|
| Q |
422 |
aatgaagtcttgtatcaagggtttcttaaaagtaccatttttgaagtcataaacggccaaat |
483 |
Q |
| |
|
|| |||||| |||||| |||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
23226189 |
tttgttgtcttgcgtcaaggttttcttaagagtaccatttttgaaatcataaacggccaaat |
23226250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 264 - 313
Target Start/End: Original strand, 1940263 - 1940312
Alignment:
| Q |
264 |
taattagaacaaataaaaaataaataacataaacggaaattaacatataa |
313 |
Q |
| |
|
|||| ||||||||||||||| ||||| ||||||| ||||||||||||||| |
|
|
| T |
1940263 |
taatcagaacaaataaaaaacaaataccataaacagaaattaacatataa |
1940312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 316
Target Start/End: Complemental strand, 7434961 - 7434929
Alignment:
| Q |
284 |
taaataacataaacggaaattaacatataagtt |
316 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
|
|
| T |
7434961 |
taaataacataaatggaaattaacatataagtt |
7434929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 446 - 482
Target Start/End: Complemental strand, 17362274 - 17362238
Alignment:
| Q |
446 |
cttaaaagtaccatttttgaagtcataaacggccaaa |
482 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
17362274 |
cttaaaagtaccatttttgaaatcacaaacggccaaa |
17362238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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