View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5854-Insertion-9 (Length: 292)
Name: NF5854-Insertion-9
Description: NF5854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5854-Insertion-9 |
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Alignment Details
Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 93 - 244
Target Start/End: Complemental strand, 4057329 - 4057176
Alignment:
| Q |
93 |
agaagcaatagagggcagataagtttgctaagaaagcaacaaaatgactcagagaaacaattcaaaactttgaactttttt-aatcactaagagagatta |
191 |
Q |
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| T |
4057329 |
agaagtaaaagagggaagataaatttgctaagcaagcaataaaatgacttagagaaacaattcaaaactttgaacttttttaaatcactaagagagatta |
4057230 |
T |
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| Q |
192 |
tcaattt-attagcgaatcatggcggtttttggtgacctaaggatatacacatt |
244 |
Q |
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| T |
4057229 |
tcaatttgtttagcgaatcatggcggtttttggtgacctaaggatatacacatt |
4057176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 4058423 - 4058354
Alignment:
| Q |
8 |
aataagttgtgtgagtttattagaacctgaatgtgtatctcttatatgagagcatagtgttgcgtcttca |
77 |
Q |
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| T |
4058423 |
aataagttgtgtgagtttattagaacttgtatgtgtatctcttatacgagagcatagtgttgcctcttca |
4058354 |
T |
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