View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5855-Insertion-10 (Length: 160)
Name: NF5855-Insertion-10
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5855-Insertion-10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 54; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 65 - 118
Target Start/End: Complemental strand, 5049787 - 5049734
Alignment:
| Q |
65 |
tacttttattttagagaattgaataatttgacatctaaaaaattgttcaacatc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5049787 |
tacttttattttagagaattgaataatttgacatctaaaaaattgttcaacatc |
5049734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 5060758 - 5060649
Alignment:
| Q |
9 |
gtttttcctttctttatcaagtataagctcatttccatttttcatcttcttaaaggtac-ttttattttagagaattgaataatttgacatctaaaaaat |
107 |
Q |
| |
|
|||||| ||||||| | ||||| || || ||||||||||||||||||||||||| | | ||||||||||||| | || |||| |||||||||||||||| |
|
|
| T |
5060758 |
gttttttctttcttcaccaagtctacgcacatttccatttttcatcttcttaaacatgctttttattttagagtaatg-ataagttgacatctaaaaaat |
5060660 |
T |
|
| Q |
108 |
tgttcaacatc |
118 |
Q |
| |
|
||||||||||| |
|
|
| T |
5060659 |
tgttcaacatc |
5060649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University