View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5855-Insertion-2 (Length: 853)
Name: NF5855-Insertion-2
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5855-Insertion-2 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0062 (3 HSPs) |
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| [»] scaffold0938 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 717; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 717; E-Value: 0
Query Start/End: Original strand, 9 - 853
Target Start/End: Complemental strand, 22104782 - 22103938
Alignment:
| Q |
9 |
tcaataacattaatttctttcaaagaatgagtagagattaacaaacgagcataatccaacctatccttattagtagtacaatcatcaatttttaaaagtc |
108 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22104782 |
tcaataacattaatttctttcaaagaaggagtagagattaacaaacaagcataatccaacctatccttattagtagtacaatcatcaatttttaaaagtc |
22104683 |
T |
|
| Q |
109 |
ggccttgtgttgccgccaactccagaaagaaaatttcattccatacatgaagaggcactccataacatctcacccatgatcccctctcatagttcacaat |
208 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
22104682 |
ggccttgtgttgccgccaactccagaaagaaaatgtcattccatacatgaagaggcactccataacatctcacccatgctcccctctcatagttcacaat |
22104583 |
T |
|
| Q |
209 |
agaatccaacgtccaaggtctacaatcatccaaaaaattaccaataaaatcaactgccgccttgaaaagttccatagcatcaccttcgacacctggatgc |
308 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22104582 |
agaatccaacatccagggtctacaatcatccaaaaaattaccaataaaatcagccgccgccttgaaaagttccatagcatcaccttcgacacccggatgc |
22104483 |
T |
|
| Q |
309 |
aaaacaacattgtctccacccaaagaaataagcttgaaatccacaaactccgcatcaacgaaagcttgttgaacaatagacaagcaaaagtcatttttta |
408 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
22104482 |
aaaacaacattgtcttcacccaaagaaataagcttgaaatccacaaaccccacatcaacgaaagcttgttgaacaatatacaagcaaaagtcatttttaa |
22104383 |
T |
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| Q |
409 |
gtcttgctaaaatactcttggaggcccaagtaatgtcatctgtgaacggcatgaatttacacatcactttcttttcaacatcagcgccattaactagctc |
508 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22104382 |
gtcttgctaaaatactcttggatgcccaagtaatgtcatctgtgaacggcatgaatttacacatcactttcttttcaacatcagcgccattaactagctc |
22104283 |
T |
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| Q |
509 |
cttcaccatcactttctttgaatttatacatcaatctattgggaaaattggtaatgtaatacacagcagatacctgagttgacattgctggagcgttgcc |
608 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22104282 |
cttcaccatcactttctttgaatttatacatcaatctattaggaaaatttgtaatgtaatacacagcagatacctgagttgacactgctggagcgttgcc |
22104183 |
T |
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| Q |
609 |
actcttatcttcagcagttgtgatttttgacagttttgagcctatgcctgcattgctgatgcgtgagtctccctcttgcatgtactgatcctccctcgat |
708 |
Q |
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||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| || | ||||||||||||||| |||||||||||||||||||| |
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| T |
22104182 |
actctcatcttcagcagttgtggtttttgacagttttgagcctatgcctgcattgcttatacacgagtctccctcttgcctgtactgatcctccctcgat |
22104083 |
T |
|
| Q |
709 |
ttgataacaccctccctcgtacacgaaaacggacgatcacgacagtgtgtcaatgaccgtccacgtccatactcatgcaaaaccctatccctgggcaatt |
808 |
Q |
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| T |
22104082 |
tcgataacaccctccctcgtacccaaaaacggacgatcacgacggtgtgtcaatgaccatccacgtccatactcatgcaaaaccctaaccctgggcaatt |
22103983 |
T |
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| Q |
809 |
gatcaacacgcaaattgaccctactgcgaggcctgctgtcaaacc |
853 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
22103982 |
gatcaacacgcaaactgaccctactgcgaggcctgctgtcaaacc |
22103938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062 (Bit Score: 48; Significance: 6e-18; HSPs: 3)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 57 - 260
Target Start/End: Original strand, 13677 - 13880
Alignment:
| Q |
57 |
gcataatccaacctatccttattagtagtacaatcatcaatttttaaaagtcggccttgtgttgccgccaactccagaaagaaaatttcattccatacat |
156 |
Q |
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|||||||||| | |||| | ||| ||||||||||||| ||||| | || || |||||||||| |||| ||| | |||||| || ||||||| | | |
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| T |
13677 |
gcataatccatcatatcttcgttaatagtacaatcatctattttaagaactctaccttgtgttgttgccagctcgaaaaagaagataatattccatgctt |
13776 |
T |
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| Q |
157 |
gaagaggcactccataacatctcacccatgatcccctctcatagttcacaatagaatccaacgtccaaggtctacaatcatccaaaaaattaccaataaa |
256 |
Q |
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|||||||||| ||| ||||| ||||||| | ||||||||||| ||||||| | ||| ||||||||||||||| || ||||||||||||||||| || |
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| T |
13777 |
gaagaggcaccccaaaacatgtcacccaagcacccctctcataattcacaaccgtctccttcgtccaaggtctacactcgtccaaaaaattaccaatcaa |
13876 |
T |
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| Q |
257 |
atca |
260 |
Q |
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|||| |
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| T |
13877 |
atca |
13880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 184
Target Start/End: Original strand, 23196 - 23366
Alignment:
| Q |
14 |
aacattaatttctttcaaagaatgagtagagattaacaaacgagcataatccaacctatccttattagtagtacaatcatcaatttttaaaagtcggcct |
113 |
Q |
| |
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|||||| ||||||||||| || |||||| |||| || |||| |||||||| |||||| || ||| |||||||||||| ||||| | ||||| ||| |
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| T |
23196 |
aacatttatttctttcaacaaaggagtagcaattagaaaccgaggataatccatcctatctttgttaatagtacaatcatttattttaagaagtctacct |
23295 |
T |
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| Q |
114 |
tgtgttgccgccaactccagaaagaaaatttcattccatacatgaagaggcactccataacatctcaccca |
184 |
Q |
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||||||| |||| ||||| |||||| || | |||||| | | ||||||||| ||| ||||| ||||||| |
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| T |
23296 |
tgtgttgttgccagctccaaaaagaagatattgttccatgcttaaagaggcaccccaaaacatgtcaccca |
23366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 184
Target Start/End: Original strand, 33364 - 33534
Alignment:
| Q |
14 |
aacattaatttctttcaaagaatgagtagagattaacaaacgagcataatccaacctatccttattagtagtacaatcatcaatttttaaaagtcggcct |
113 |
Q |
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|||||| ||||||||||| || |||||| |||| || |||| |||||||| |||||| || ||| |||||||||||| ||||| | ||||| ||| |
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| T |
33364 |
aacatttatttctttcaacaaaggagtagcaattagaaaccgaggataatccatcctatctttgttaatagtacaatcatttattttaagaagtctacct |
33463 |
T |
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| Q |
114 |
tgtgttgccgccaactccagaaagaaaatttcattccatacatgaagaggcactccataacatctcaccca |
184 |
Q |
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||||||| |||| ||||| |||||| || | |||||| | | ||||||||| ||| ||||| ||||||| |
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| T |
33464 |
tgtgttgttgccagctccaaaaagaagatattgttccatgcttaaagaggcaccccaaaacatgtcaccca |
33534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0938 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0938
Description:
Target: scaffold0938; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 1256 - 1086
Alignment:
| Q |
14 |
aacattaatttctttcaaagaatgagtagagattaacaaacgagcataatccaacctatccttattagtagtacaatcatcaatttttaaaagtcggcct |
113 |
Q |
| |
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|||||| ||||||||||| || |||||| |||| || |||| |||||||| |||||| || ||| |||||||||||| ||||| | ||||| ||| |
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| T |
1256 |
aacatttatttctttcaacaaaggagtagcaattagaaaccgaggataatccatcctatctttgttaatagtacaatcatttattttaagaagtctacct |
1157 |
T |
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| Q |
114 |
tgtgttgccgccaactccagaaagaaaatttcattccatacatgaagaggcactccataacatctcaccca |
184 |
Q |
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||||||| |||| ||||| |||||| || | |||||| | | ||||||||| ||| ||||| ||||||| |
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| T |
1156 |
tgtgttgttgccagctccaaaaagaagatattgttccatgcttaaagaggcaccccaaaacatgtcaccca |
1086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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