View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5855-Insertion-3 (Length: 695)

Name: NF5855-Insertion-3
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5855-Insertion-3
NF5855-Insertion-3
[»] chr5 (1 HSPs)
chr5 (8-695)||(9116173-9116860)


Alignment Details
Target: chr5 (Bit Score: 651; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 8 - 695
Target Start/End: Original strand, 9116173 - 9116860
Alignment:
Q  8 acatttcctcaggtaattattatcaatttgcaaagatgtcaatagcacgcaaattttacagagctacaagacatgaggggaactgacaagaaacccttac 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9116173 acatttcctcaggtaattattatcaatttgcaaagatgtcaatagcacgcaaattttacagagctacaagacatgaagggaactgacaagaaacccttac 9116272  T
Q  108 tgcagtgactcgcgtcattttcattcatccttgtcatatgggatgtcaagcatgagaagtctagtttaataaatttataatctgccaactaatcatacca 207  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9116273 tgcagtgactcgcgtcatttccattcatccttgtcatatgggatgtcaagcatgagaagtctagtttaataaatttataatctgccaactaatcatacca 9116372  T
Q  208 gaaaacatgatgcacataaagctcaatgttaaagaagtattacaccttcagcctgaaacaccataatagcggatagttctatagacaaactgatatgaac 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9116373 gaaaacatgatgcacataaagctcaatgttaaagaagtattacaccttcagcctgaaacaccataatagcggatagttctatagacaaactgatatgaac 9116472  T
Q  308 taatgaaactcaggacgataaaagaggattaactctctggacttggggctagtatattgtaacaattatctaatgaactcggttaattatcaaggggtga 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9116473 taatgaaactcaggacgataaaagaggattaactctctggacttggggctagtatattgtaacaattatctaatgaactcggttaattatcaaggggtga 9116572  T
Q  408 aaggtatataaacagggagaaaggagaaagttggggtttctttgtatcattctttcaatttaaatatacatagtcttgttttcttctttttgattctcca 507  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9116573 aaggtatataaacaaggagaaaggagaaagttggggtttctttttatcattctttcaatttaaatatacatagtcttgttttcttctttttgattctcca 9116672  T
Q  508 caaaccagcttatcataaacatggaataatatagtatatcaataatcaacggccaatttcatcttattacaagaattgaatgatcagatcatctcaagnn 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  9116673 caaaccagcttatcataaacatggaataatatagtatatcaataatcaacggccaatttcatcttattacaagaattgaatgatcagatcatctcaagaa 9116772  T
Q  608 nnnnnctgaataatcaaagccttgtccaacctcacttttcccgtattattcatatacaatattcattttcgcatataagtaccaagta 695  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9116773 aaaaactgaataatcaaagccttgtccaacctcacttttcccgtattattcatatacaatattcattttcgcatataagtaccaagta 9116860  T

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