View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5855-Insertion-4 (Length: 690)
Name: NF5855-Insertion-4
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5855-Insertion-4 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 250 - 690
Target Start/End: Complemental strand, 52273304 - 52272864
Alignment:
| Q |
250 |
ccaataactcacatagtttaatgtgttttgtttagaaacaagagatgctgcatttaaacctgttcctctggttcagaagcctatttcgtctatactggat |
349 |
Q |
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| T |
52273304 |
ccaataactcacatagtttaatgtgttttgtttagaaacaagagatgctgcatttaaacctgttcctctggttcagaagcctatttcgtctatactggat |
52273205 |
T |
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| Q |
350 |
aaaattcgaaagaggaaattagaatttttaaagaagtaagtgggtttacatcaatattttgtttcagcatgcacttaattgggatatttttactttagat |
449 |
Q |
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| T |
52273204 |
aaaattcgaaagaggaaattagaatttttaaagaagtaagtgggtttacatcaatattttgtttcagcatgcacttaattgggatatttttactttagat |
52273105 |
T |
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| Q |
450 |
aaacactaatggatacttgggttgggtttcagatctaatgtttcttttcatgacaatgatggcttccatgtggatattgattctgagcctcgccccagtg |
549 |
Q |
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| T |
52273104 |
aaacactaatggatacttgggttgggtttcagatctaatgtttcttttcatgacaatgatggcttccatgtggatattgattctgatcctcgccctagtg |
52273005 |
T |
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| Q |
550 |
aagagataactaataagattgaaaatgctgaatccgaagaaacaccagctacacgccctgcagagaatgatttaagcacactgcatattgatggttccac |
649 |
Q |
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| T |
52273004 |
aagagataactaataagattgaaaatgctgaatccgaagaaacaccagctacacgccctgcagagaatgatttaagcacactgcatattgatggttccac |
52272905 |
T |
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| Q |
650 |
cgatgctgcagatcattcgagccgtgaaagtattccttctc |
690 |
Q |
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| T |
52272904 |
cgatgctgcagatcattcgagccgtgaaagtattccttctc |
52272864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 52273538 - 52273347
Alignment:
| Q |
9 |
agaagaagcttaaagaatctatctccaataaaagaaaagccgagaaggtttgtatgcgttttccagtgaattctttttatacaatttgttattgatttta |
108 |
Q |
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| T |
52273538 |
agaagaagcttaaagaatctatctccaataaaagaaaagccgagaaggtttgtatgcgttttccagtgaattatttttatacaatttgttattgatttta |
52273439 |
T |
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| Q |
109 |
ttaatttgtagattcaccgatttaacaggaaagaagggaaaatctcaaacagcttcgagctgagtctcagagacttcttcgcggtatggata |
200 |
Q |
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| T |
52273438 |
ttaatttgtagattcaccgatttaacaggaaagaagggaaaatctcaaacagcttcgagctgagtctcagagacttcttcgcggtatggata |
52273347 |
T |
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