View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5855-Insertion-5 (Length: 576)
Name: NF5855-Insertion-5
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5855-Insertion-5 |
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| [»] chr4 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 168 - 576
Target Start/End: Complemental strand, 22042712 - 22042304
Alignment:
| Q |
168 |
tgcaattgaataaatcatacctggcccatttgtcaagtcaccataagacggtatggagttcacaaaaaatgtacaagaattctcattcttct-aacaatt |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
22042712 |
tgcaattgaataaatcatacctggcccatttgtcaagtcaccataagacggtatggagttcacaaaaaatgtacaagcattctcattcttcttaacaatt |
22042613 |
T |
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| Q |
267 |
gcaattaccttgcgaatggtttccatatactctggcaagcgcacatggcgaaaatattccacacaagataatgatactagtatcttcaatgagatttcgg |
366 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22042612 |
gcagttaccttgcgaatggtttccatatactctggcaagcgcacatggcgaaaatattccacacaagataatgatactagtatcttcaatgagatttcgg |
22042513 |
T |
|
| Q |
367 |
tttgtatttcttgagcaaatgtggaactcaatttgtgctttgttacagatagtgcaaatactacaaccatgagaaaagcagattccgcggtttattcaaa |
466 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22042512 |
tttgtatttcttgagcaaatgtggaactcaatttgtgctttgttacagatagtgcaaatactacaaccatgagaaaagcagattccgcggttttttcaaa |
22042413 |
T |
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| Q |
467 |
atttgtaagcaactcatcttcttttcctttaagatccataaaccactttcctgtgtccaaagtaaatatcgcgacagtattcccatataagattctccac |
566 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
22042412 |
atttgtaagcaactcatcttcttttcctttaagatccat-aaccactttcctgtgtccaaagtaaatatcgcgatagtattcccatataagattctccac |
22042314 |
T |
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| Q |
567 |
tatattctta |
576 |
Q |
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|||||||||| |
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| T |
22042313 |
tatattctta |
22042304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 22042871 - 22042756
Alignment:
| Q |
9 |
aaacactcaatcaaagttggaatgactcgtaggtaaaacaaaacacgggctgtttgtacatcatccttggaccaaaagtatttcgttttctggtctagaa |
108 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
22042871 |
aaacactcaatcaaagttggaatgactcgtaggtaaagcaaaacacgggctgtttgtacttcatccttggaccaaaagtatttcgttttctggtctagaa |
22042772 |
T |
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| Q |
109 |
gaatatagaatcttat |
124 |
Q |
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||| |||||||||||| |
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| T |
22042771 |
gaacatagaatcttat |
22042756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 168 - 576
Target Start/End: Original strand, 2424704 - 2425112
Alignment:
| Q |
168 |
tgcaattgaataaatcatacctggcccatttgtcaagtcaccataagacggtatggagttcacaaaaaatgtacaagaattctcattcttct-aacaatt |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| | |||| || |
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| T |
2424704 |
tgcaattgaataaatcatacctggcccatttgtcaagtcgccataagacggtatggagttcacaaaaaaggtacaagcattctcattcttgttaacactt |
2424803 |
T |
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| Q |
267 |
gcaattaccttgcgaatggtttccatatactctggcaagcgcacatggcgaaaatattccacacaagataatgatactagtatcttcaatgagatttcgg |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2424804 |
gcaattaccttgcgaatggtttccatatactctggcaagcgaacatggcgaaaatattccacacaagataatgatactagtatcttcaatgagacttcgg |
2424903 |
T |
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| Q |
367 |
tttgtatttcttgagcaaatgtggaactcaatttgtgctttgttacagatagtgcaaatactacaaccatgagaaaagcagattccgcggtttattcaaa |
466 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||| || |
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| T |
2424904 |
tttgtatttcttgagcaaatttggaactcaatttgtgctttgttacagctagtgcaaatactacaaccatgagaaaagcagattccgcgattttttcgaa |
2425003 |
T |
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| Q |
467 |
atttgtaagcaactcatcttcttttcctttaagatccataaaccactttcctgtgtccaaagtaaatatcgcgacagtattcccatataagattctccac |
566 |
Q |
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|| ||||||||| ||||||||||||||||||||| | | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2425004 |
atccgtaagcaacacatcttcttttcctttaagatgcgt-agccactttcctgtgtccaaagtaaatatcgcgacagtattcccatataagattctccac |
2425102 |
T |
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| Q |
567 |
tatattctta |
576 |
Q |
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|||||||||| |
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| T |
2425103 |
tatattctta |
2425112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 2424548 - 2424663
Alignment:
| Q |
9 |
aaacactcaatcaaagttggaatgactcgtaggtaaaacaaaacacgggctgtttgtacatcatccttggaccaaaagtatttcgttttctggtctagaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||| |
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| T |
2424548 |
aaacactcaatcaaagttggaatgactcgtaggtaaaacaaaacacgggctgtttgcacttcatccttggaccaaaagtatttggttttctggtctagaa |
2424647 |
T |
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| Q |
109 |
gaatatagaatcttat |
124 |
Q |
| |
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||| ||| |||||||| |
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| T |
2424648 |
gaacatataatcttat |
2424663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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