View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5855-Insertion-6 (Length: 561)

Name: NF5855-Insertion-6
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5855-Insertion-6
NF5855-Insertion-6
[»] chr1 (7 HSPs)
chr1 (7-469)||(31077932-31078394)
chr1 (13-464)||(31131963-31132414)
chr1 (7-464)||(31127255-31127712)
chr1 (497-561)||(31077840-31077904)
chr1 (497-545)||(31128854-31128902)
chr1 (497-557)||(31127162-31127222)
chr1 (497-558)||(31131869-31131930)


Alignment Details
Target: chr1 (Bit Score: 447; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 7 - 469
Target Start/End: Complemental strand, 31078394 - 31077932
Alignment:
Q  7 cacttcccatcctcatcttgactcaaccacctctccggtcgaaactcagcccaatcaagtccccatattttctctgaccttcccatagcatatatatgat 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31078394 cacttcccatcctcatcttgactcaaccacctctccggtcgaaactcagcccaatcaagtccccatattttctccgaccttcccatagcatatatatgat 31078295  T
Q  107 acgccactctccaccctttcttcacaaaagttccatctggcaaaacatcatcgtacgctgcttctttagtatccactggaactggaggataaagtctcat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31078294 acgccactctccaccctttcttcacaaaagttccatctggcaaaacatcattgtacgctgcttctttagtatccactggaactggaggataaagtctcat 31078195  T
Q  207 actctcgcataacgacgcatgagtataaaccatatccttcacctcatcgtaactaactatttctgattttccggtaatctctttgagaatttcattctcc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31078194 actctcgcataacgacgcatgagtataaaccatatccttcacctcatcgtaactaactatttctgattttccggtaatctctttgagaatttcattctcc 31078095  T
Q  307 acatgactatgcttagagagtaaccaaaagaaccacgtgagtgcagctgaagttgtatctttcccagcaagaataaggcttattacaatatcaactacaa 406  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31078094 acatgactatgcttagagagtagccaaaagaaccacgtgagtgcagctgaagttgtatctttcccagcaagaataaagcttattacaatatcaactacaa 31077995  T
Q  407 atgattcatccgaatgacccgaacttaaaaaccgcgataaaagatcaactgattccaaagttg 469  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31077994 atgattcatccgaatgacccgaacttaaaaaccgcgataaaagatcaactgattccaaagttg 31077932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 13 - 464
Target Start/End: Complemental strand, 31132414 - 31131963
Alignment:
Q  13 ccatcctcatcttgactcaaccacctctccggtcgaaactcagcccaatcaagtccccatattttctctgaccttcccatagcatatatatgatacgcca 112  Q
    ||||| ||| || |||||||||||||||| |||| |||||||||||||||   ||||||||||||||| |||||||||||| |||||| ||||||||| |    
T  31132414 ccatcgtcagctcgactcaaccacctctcaggtcaaaactcagcccaatcggatccccatattttctcagaccttcccataacatatacatgatacgcaa 31132315  T
Q  113 ctctccaccctttcttcacaaaagttccatctggcaaaacatcatcgtacgctgcttctttagtatccactggaactggaggataaagtctcatactctc 212  Q
    || |||||||||||||||| || |||||||||||||||||||||||||| |||||||| |||| |||||||| ||||||||| |  | ||||||||||||    
T  31132314 ctatccaccctttcttcactaatgttccatctggcaaaacatcatcgtaggctgcttccttagcatccactgaaactggagggtccattctcatactctc 31132215  T
Q  213 gcataacgacgcatgagtataaaccatatccttcacctcatcgtaactaactatttctgattttccggtaatctctttgagaatttcattctccacatga 312  Q
    ||||||||| |||||||| |||||||||| |||||||||||||| |||||||||   ||||||||  ||||||||||| ||||| |||||||| ||||||    
T  31132214 gcataacgatgcatgagtgtaaaccatattcttcacctcatcgttactaactatcattgattttctagtaatctctttaagaatctcattctctacatga 31132115  T
Q  313 ctatgcttagagagtaaccaaaagaaccacgtgagtgcagctgaagttgtatctttcccagcaagaataaggcttattacaatatcaactacaaatgatt 412  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||| ||||    
T  31132114 ctatgcttagagattaacaaaaagaaccacgtgagtgcagctgaagttgtatctctcccagcaagaataaagcttatcacaatatcaactacaaaagatt 31132015  T
Q  413 catccgaatgacccgaacttaaaaaccgcgataaaagatcaactgattccaa 464  Q
    | ||||||||||| ||||||||||| ||||| |||| ||| || ||||||||    
T  31132014 cgtccgaatgaccagaacttaaaaatcgcgacaaaatatccaccgattccaa 31131963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 7 - 464
Target Start/End: Complemental strand, 31127712 - 31127255
Alignment:
Q  7 cacttcccatcctcatcttgactcaaccacctctccggtcgaaactcagcccaatcaagtccccatattttctctgaccttcccatagcatatatatgat 106  Q
    ||||| ||||| ||| ||||||||||||| ||||| ||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||    
T  31127712 cactttccatcatcaacttgactcaaccatctctcaggtcgaaactcagcccaatcgggtccccatattttctcggaccttcccatagcatatatatgat 31127613  T
Q  107 acgccactctccaccctttcttcacaaaagttccatctggcaaaacatcatcgtacgctgcttctttagtatccactggaactggaggataaagtctcat 206  Q
    | | ||| ||||||||||||||||| ||||||||||| |||||||| || ||  | || ||||| |||  |||||| ||||| |||||||| ||||||||    
T  31127612 atgtcaccctccaccctttcttcactaaagttccatccggcaaaacgtcgtcacaagccgcttccttaccatccacgggaaccggaggatacagtctcat 31127513  T
Q  207 actctcgcataacgacgcatgagtataaaccatatccttcacctcatcgtaactaactatttctgattttccggtaatctctttgagaatttcattctcc 306  Q
    |||||| ||||| | ||||||||| |||||||||||||||||||||| |||| ||||  |||| ||||||||  |||  || || ||||| |||||||||    
T  31127512 actctcacataaagccgcatgagtgtaaaccatatccttcacctcattgtaattaaccgtttccgattttcccataacttcctttagaatctcattctcc 31127413  T
Q  307 acatgactatgcttagagagtaaccaaaagaaccacgtgagtgcagctgaagttgtatctttcccagcaagaataaggcttattacaatatcaactacaa 406  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||    
T  31127412 acatgactatgcttagagagtaaccaaaagaaccaagtgagtgcagctgaagttgtatctctcccagcaagaataaagcttattacaatatcaacaacaa 31127313  T
Q  407 atgattcatccgaatgacccgaacttaaaaaccgcgataaaagatcaactgattccaa 464  Q
    | |||||||| |||||||| ||||||||||| || |||| || ||| | |||||||||    
T  31127312 aagattcatctgaatgacctgaacttaaaaatcgtgatagaatatccaatgattccaa 31127255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 497 - 561
Target Start/End: Complemental strand, 31077904 - 31077840
Alignment:
Q  497 ccctaacgattcttgtagcaagtcctcttacttcagcgacggcttctttcaatcgtcgctcgatc 561  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31077904 ccctaacgattcttgtagcaagtcctcttacttcagcgacggcttctttcaatcgtcgctcgatc 31077840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 497 - 545
Target Start/End: Complemental strand, 31128902 - 31128854
Alignment:
Q  497 ccctaacgattcttgtagcaagtcctcttacttcagcgacggcttcttt 545  Q
    |||||||||||||||| || ||||||||||||||| |||||||||||||    
T  31128902 ccctaacgattcttgtggcgagtcctcttacttcaacgacggcttcttt 31128854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 497 - 557
Target Start/End: Complemental strand, 31127222 - 31127162
Alignment:
Q  497 ccctaacgattcttgtagcaagtcctcttacttcagcgacggcttctttcaatcgtcgctc 557  Q
    |||||||||||||||| || |||||||||||||||||  | |||||||| || ||||||||    
T  31127222 ccctaacgattcttgtggcgagtcctcttacttcagcagcagcttcttttaaccgtcgctc 31127162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 558
Target Start/End: Complemental strand, 31131930 - 31131869
Alignment:
Q  497 ccctaacgattcttgtagcaagtcctcttacttcagcgacggcttctttcaatcgtcgctcg 558  Q
    ||||||| ||| |||| || || || |||||||||||||| ||||||||||| |||||||||    
T  31131930 ccctaacaatttttgtggcgagcccccttacttcagcgacagcttctttcaaccgtcgctcg 31131869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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