View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5855-Insertion-9 (Length: 167)
Name: NF5855-Insertion-9
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5855-Insertion-9 |
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Alignment Details
Target: chr5 (Bit Score: 101; Significance: 2e-50; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 13855732 - 13855611
Alignment:
| Q |
22 |
atatccttaacaaaatacttaacagtattaacaaggcatgaaattacagtaaggagctacagtttttagtgtgcagtaagagacttcggattaatcnnnn |
121 |
Q |
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| T |
13855732 |
atatccttaacaaaatacttaacagtattaacaaggcatgaaattacagtaaggagctacagtttttagtgtgcagtaagagacttcggattaatctttt |
13855633 |
T |
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| Q |
122 |
nnncccttaagttggtcctttg |
143 |
Q |
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| T |
13855632 |
tttcccttaagttggtcctttg |
13855611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 10108937 - 10108843
Alignment:
| Q |
22 |
atatccttaacaaaatacttaacagtattaacaaggcatgaaattacagtaaggagctacagtttttagtgtgcagtaagagacttcggattaatc |
117 |
Q |
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| T |
10108937 |
atatccttaataaaatactta-cagtattaacaaggcatgaatttacagtaaggagctacagttgtcagtttgcagtaagagacttcggattaatc |
10108843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 10210184 - 10210263
Alignment:
| Q |
22 |
atatccttaacaaaatacttaacagtattaacaaggcatgaaattacagtaaggagctacagtttttagtgtgcagtaaga |
102 |
Q |
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| T |
10210184 |
atatccttaataaaatactta-cagtattaacaagacatgaaattacagtaaggggctacaatgtttagtgtgcaataaga |
10210263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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