View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5855_high_14 (Length: 409)
Name: NF5855_high_14
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5855_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 20 - 399
Target Start/End: Original strand, 9399531 - 9399915
Alignment:
| Q |
20 |
gcacgtgctcatagaagaaatattaactcatcaatgaatatttttcaaagggaatatttgttattcaaatccgtaccaattaagttttactgtggatcat |
119 |
Q |
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| T |
9399531 |
gcacgtgctcataaaagaaatatcaactcatcaatgaatatttttcaaagggaatatttgttattcaaatccgtaccaattaagttttactgtggatcat |
9399630 |
T |
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| Q |
120 |
ataaaattgtgtgttcaatata-----cttcaatatattgttcttnnnnnnnnnncttctagattttttagtaagaaaaaatccaaaacaaacgtttgag |
214 |
Q |
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| T |
9399631 |
ataaaattgtgtgttcaatataatatacttcaatatattgttcttaaaaaaata-cttctagattttttagtaagaaaaaatccaaaacaaacatttgag |
9399729 |
T |
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| Q |
215 |
cattgat-tacgaattgtacataaaagaaagaagtagcgataaatttaattaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaat |
313 |
Q |
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| T |
9399730 |
cattgatatacgacttgtacataaaagaaagaagtagagataaatttaattaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaat |
9399829 |
T |
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| Q |
314 |
tttgatcctcagcacaatcaagcaatatatcaagaaagtctctgaattcagcaccctgctcacccttattttccttccttcctttg |
399 |
Q |
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| T |
9399830 |
tttgatcctcggcacaatcaagcaatatatcaagaaagtctctgaattcagcaccttgctcacccttattttctttccttcctttg |
9399915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 236 - 399
Target Start/End: Original strand, 9382283 - 9382446
Alignment:
| Q |
236 |
aaaagaaagaagtagcgataaatttaattaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattttgatcctcagcacaatcaag |
335 |
Q |
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| T |
9382283 |
aaaagaaggaagtagggataaatttaattaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattttgatcctcagcacaatcaag |
9382382 |
T |
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| Q |
336 |
caatatatcaagaaagtctctgaattcagcaccctgctcacccttattttccttccttcctttg |
399 |
Q |
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| T |
9382383 |
caatatatcaagaaagtctctgaattcagcaccttgctcacccttattttctttccttcctttg |
9382446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 9382043 - 9382129
Alignment:
| Q |
20 |
gcacgtgctcatagaagaaatattaactcatcaatgaatatttttcaaagggaatatttgttattcaaatccgtaccaattaagttt |
106 |
Q |
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| T |
9382043 |
gcacgtgctcatagatgaaatatcaactcatcaatgaatatgtatcgaagggaatatttgttattcaaatccgtaccaattaagttt |
9382129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 263 - 356
Target Start/End: Complemental strand, 23243915 - 23243822
Alignment:
| Q |
263 |
ttaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattttgatcctcagcacaatcaagcaatatatcaagaaagtctct |
356 |
Q |
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| T |
23243915 |
ttaccataatcaaggccttaacgtgaaccctttgaattttcatctcagagctttcatcctcgacataatcaagtaggatatcaagaaagtctct |
23243822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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