View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5855_high_2 (Length: 572)
Name: NF5855_high_2
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5855_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 436 - 544
Target Start/End: Complemental strand, 24202067 - 24201959
Alignment:
| Q |
436 |
gaagaaaacaaaaccagacgaagcattatgattaggaagaaggaaatgnnnnnnntgtgaaactgctctaagattctagagcagtagaaaatagaatttc |
535 |
Q |
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| T |
24202067 |
gaagaaaacaaaaccagacgaagcattaggattaggaagaaggaaatgaaaaaaatgtgaaactgctctaagattctagagcagtagaaaatgaaacttc |
24201968 |
T |
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| Q |
536 |
aaaactcct |
544 |
Q |
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| T |
24201967 |
aaaactcct |
24201959 |
T |
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Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 374 - 434
Target Start/End: Original strand, 29416185 - 29416245
Alignment:
| Q |
374 |
ccgttaggagaatagttggttaaatttcgtaaaacgcgggaagaaacaggagtgacaagat |
434 |
Q |
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| T |
29416185 |
ccgttaggagaatggttggttgaatttggtgaaacgcgggaagaaacaggagtgagaagat |
29416245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 376 - 434
Target Start/End: Original strand, 36680659 - 36680717
Alignment:
| Q |
376 |
gttaggagaatagttggttaaatttcgtaaaacgcgggaagaaacaggagtgacaagat |
434 |
Q |
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| T |
36680659 |
gttaggagaatggttgcttgaatttcgtgagacgcgggaagaaataggagtgagaagat |
36680717 |
T |
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