View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5855_high_20 (Length: 315)
Name: NF5855_high_20
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5855_high_20 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 11 - 315
Target Start/End: Original strand, 13448947 - 13449251
Alignment:
| Q |
11 |
gaatataccgattacctttggtggttttccacacaaggttatatgatgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatctgtctga |
110 |
Q |
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| T |
13448947 |
gaatataccgattacctttggcggttttccacacaaggtgatatggtgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatctgtctga |
13449046 |
T |
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| Q |
111 |
gacataagaaaattgtttgttttgaggttttgcacgagggagacagcaaaacagcacaatccattgaatgtgatgtttgggatctgaaacttatcggcca |
210 |
Q |
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| T |
13449047 |
gacttaagtaaattgtttgttttgagggtttccacgagggagacagcaaaaaggcacaatccattgaatgtgatgtttgggatctgaaacttatcggcca |
13449146 |
T |
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| Q |
211 |
agtcattaacccatggatacgtggagtcggagatgatacaatccggtggatcattctcactgaaatccccaataggttctttaaggagcatcgcgccagt |
310 |
Q |
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| T |
13449147 |
agtcattaacccatgggtacgtggagtcggagatgatacaatccggtggatcattctcaatgaaatccccaataggttctttaaggagcatcgcgccagt |
13449246 |
T |
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| Q |
311 |
gtgga |
315 |
Q |
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|||| |
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| T |
13449247 |
atgga |
13449251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 21 - 283
Target Start/End: Original strand, 13440794 - 13441056
Alignment:
| Q |
21 |
attacctttggtggttttccacacaaggttatatgatgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatctgtctgagacataagaa |
120 |
Q |
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| T |
13440794 |
attacctttggcggttttccgcacaaggttatacgatgaggaaaatttggaacaacaaaggaacttgaatccaaatcagaattagtatcagaatgaagta |
13440893 |
T |
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| Q |
121 |
aattgtttgttttgaggttttgcacgagggagacagcaaaacagcacaatccattgaatgtgatgtttgggatctgaaacttatcggccaagtcattaac |
220 |
Q |
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| T |
13440894 |
agttgtttgcttggagggattccacgagagagacggtaaaaagtgacaatccattgaatgtgaggtttgggatctgaagcttatgcgccaagtcattagc |
13440993 |
T |
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| Q |
221 |
ccatggatacgtggagtcggagatgatacaatccggtggatcattctcactgaaatccccaat |
283 |
Q |
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| T |
13440994 |
ccatgggtatgcggagtcggagatgatacaatctggtggatctttctccatgaaatcctcaat |
13441056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 20 - 265
Target Start/End: Original strand, 13455427 - 13455672
Alignment:
| Q |
20 |
gattacctttggtggttttccacacaaggttatatgatgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatctgtctgagacataaga |
119 |
Q |
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| T |
13455427 |
gattaactttggcggtttttcacataaggtgatatgatgaggaaaatttggaacaacaaaggtacttgaatccgaatcaaaatttgtatcagaatgaagt |
13455526 |
T |
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| Q |
120 |
aaattgtttgttttgaggttttgcacgagggagacagcaaaacagcacaatccattgaatgtgatgtttgggatctgaaacttatcggccaagtcattaa |
219 |
Q |
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| T |
13455527 |
aaattgtttgttttgagggtctccattagggagacggcaaaaaggcacattccgttaaatgtgatgttaggaatctgaaacttatgggccaagtcattaa |
13455626 |
T |
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| Q |
220 |
cccatggatacgtggagtcggagatgatacaatccggtggatcatt |
265 |
Q |
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| T |
13455627 |
cccatgggtatgcagcgtcggagatgatacaatctgggggatcatt |
13455672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 283
Target Start/End: Complemental strand, 3417112 - 3416859
Alignment:
| Q |
24 |
acctttggtggttttccacacaaggttatatgatgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatctgtctgagacataagaaaat |
123 |
Q |
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| T |
3417112 |
acctttggtggtttactgcacatggtgataggaagaggaaagtttggaacgatataggaacttgaatccgaatcagaatccgta------aaaagtaaat |
3417019 |
T |
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| Q |
124 |
tgtttgttttgaggttttgcacgagggagacagcaaaacagcacaatccattgaatgtgatgtttgggatctgaaacttatcggccaagtcattaaccca |
223 |
Q |
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| T |
3417018 |
tatttgttctaagggattccatgagcaagactggaaaaacggacaaaacattgtatgtgaaattagggatttgaagcttctgggccaagtcattaaccca |
3416919 |
T |
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| Q |
224 |
tggatacgtggagtcggagatgatacaatccggtggatcattctcactgaaatccccaat |
283 |
Q |
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| T |
3416918 |
tgggtatgcagagtcggagatgatacaatctggtggatcgtttttaatgaaatcctcaat |
3416859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 12541300 - 12541361
Alignment:
| Q |
42 |
cacaaggttatatgatgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatc |
103 |
Q |
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| T |
12541300 |
cacatggtgatacgatgaggaaaatttggaacgacatacgaacttgaatccgaatcagaatc |
12541361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 12483041 - 12482964
Alignment:
| Q |
26 |
ctttggtggttttccacacaaggttatatgatgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatc |
103 |
Q |
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| T |
12483041 |
ctttggtggttttgtgcacaaggtgatatggtgaggaaaatttggaacaacgaaagaatgtgaatccaaatcggaatc |
12482964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 84
Target Start/End: Complemental strand, 12589727 - 12589688
Alignment:
| Q |
45 |
aaggttatatgatgaggaaaatttggaacaacaaaggaac |
84 |
Q |
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| T |
12589727 |
aaggtgatacgatgaggaaaatttggaacaacaaaggaac |
12589688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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