View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5855_high_23 (Length: 277)
Name: NF5855_high_23
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5855_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 30704035 - 30704291
Alignment:
| Q |
1 |
ttgacccatccgagattttctttccgattccgccactatttatacccaagtaagtgtatcgtaggatcaatttatgttgttgataaaatcattggnnnnn |
100 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
30704035 |
ttgacccatccgagattttctttctgattccgccactatttatacccaagtaagtgtatggtagaatcaatttatgttgttgataaaatcattggaaaaa |
30704134 |
T |
|
| Q |
101 |
nnntgtgaatgtgtatttaattttgtaattgcatgatttattttacattatcattcaaatcaattatataattcatatcgatttaaaaaataatttggta |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30704135 |
aaatgtgactgtgtatttaattttgtaattgcatgatttattttacattatcattcaaatcaattatataattcatatcgatttaaaaaataatttggta |
30704234 |
T |
|
| Q |
201 |
ttgaatgtaaactaaaactgcttttaaaaattattcgtatatctaataattaattgaaatatg |
263 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30704235 |
ttgaatgt------aaactgcttttaaaaattattcgtatatctaataattaattgaaatatg |
30704291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 4 - 259
Target Start/End: Complemental strand, 30064524 - 30064271
Alignment:
| Q |
4 |
acccatccgagattttctttccgattccgccactatttatacccaagtaag-tgtatcgtaggatcaatttatgttgttgataaaatcattggnnnnnnn |
102 |
Q |
| |
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|||||| |||||||||||||| || ||||||||||||||||| ||||||| ||||| |||||||||||| |||||||||||||||||||| |
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| T |
30064524 |
acccatacgagattttctttctgactccgccactatttatacacaagtaaaatgtatggtaggatcaattcatgttgttgataaaatcatt--aaaaaaa |
30064427 |
T |
|
| Q |
103 |
ntgtgaatgtgtatttaattttgtaattgcatgatttattttacattatcattcaaatcaattatataattcatatcgatttaaaaaataatttggtatt |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
30064426 |
atgtgaatgtgtatttaattttgtaattgcatgatttattatacattatcattcaaaccaattatataattcatattgattt-aaaaataatttggtatt |
30064328 |
T |
|
| Q |
203 |
gaatgtaaactaaaactgcttttaaaaattattcgtatatctaataattaattgaaa |
259 |
Q |
| |
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||||||||||||||| | |||||||||||||||| ||||||||||||| |||||||| |
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| T |
30064327 |
gaatgtaaactaaaatttcttttaaaaattattcatatatctaataatgaattgaaa |
30064271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 55 - 263
Target Start/End: Complemental strand, 30052593 - 30052387
Alignment:
| Q |
55 |
tgtatcgtaggatcaatttatgttgttgataaaatcattggnnnnnnnntgtgaatgtgtatttaattttgtaattgcatgatttattttacattatcat |
154 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
30052593 |
tgtatggtaggatcaatttatgttgttgataaaatcatt--aaaaaaaatgtggatgtgtatttaattttgtaattgcatgatttattatacattatcat |
30052496 |
T |
|
| Q |
155 |
tcaaatcaattatataattcatatcgatttaaaaaataatttggtattgaatgtaaactaaaactgcttttaaaaattattcgtatatctaataattaat |
254 |
Q |
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||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| | | |
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| T |
30052495 |
tcaaaccaattatataattcatattgatttaaaaaataatttggtattgaatgtaaactaaaatatcttttaaaaattattcatatatctaataatgatt |
30052396 |
T |
|
| Q |
255 |
tgaaatatg |
263 |
Q |
| |
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||||||||| |
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|
| T |
30052395 |
tgaaatatg |
30052387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 263
Target Start/End: Original strand, 30658239 - 30658359
Alignment:
| Q |
144 |
tacattatcattcaaatcaattatataattcatatcgatttaaaaaataatttggt-----attgaatgtaaactaaaactgcttttaaaaattattcgt |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| || |||||||| | |||| |
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| T |
30658239 |
tacattatcattcaaatcaattatataattcatattgatttaaaaaataatttggtactgaattgaatgtaaactaaaattgattttaaaattgattc-- |
30658336 |
T |
|
| Q |
239 |
atatctaataattaattgaaatatg |
263 |
Q |
| |
|
|| ||||||| |||||||||||| |
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|
| T |
30658337 |
--atataataatgaattgaaatatg |
30658359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 30658063 - 30658193
Alignment:
| Q |
17 |
tttctttccgattccgccactatttatacccaagtaag-tgtatcgtaggatcaatttatgttgttgataaaatcattggnnnnnnnntgtgaatgtgta |
115 |
Q |
| |
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|||||||| || ||||||||||||||||| ||||||| ||||| |||||||||||| |||||| ||||||| |||||| |||||||||| |
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| T |
30658063 |
tttctttctgactccgccactatttatacacaagtaaaatgtatggtaggatcaattcatgttgctgataaagtcattgaaaaaaaa---tgaatgtgta |
30658159 |
T |
|
| Q |
116 |
tttaattttgtaattgcatgatttattttacatt |
149 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
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|
| T |
30658160 |
tttaattttgtaattgcatgatttattatacatt |
30658193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 210
Target Start/End: Complemental strand, 25947562 - 25947466
Alignment:
| Q |
113 |
gtatttaattttgtaattgcatgatttattttacattatcattcaaatcaattatataattcatatcgatttaaaaaataatttggtattgaatgtaa |
210 |
Q |
| |
|
|||| ||||||||| ||| ||||||| ||| |||||||| ||||| ||||||||||||||| |||| ||||| ||||||||| |||||||||||| |
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| T |
25947562 |
gtatataattttgtgatttcatgattaattatacattattattcacatcaattatataattaatatttatttatgaaataattt-atattgaatgtaa |
25947466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 175
Target Start/End: Complemental strand, 30741843 - 30741775
Alignment:
| Q |
107 |
gaatgtgtatttaattttgtaattgcatgatttattttacattatcattcaaatcaattatataattca |
175 |
Q |
| |
|
|||||||||| |||| ||||||||||| |||||||| |||| || |||||| ||||| ||||||||||| |
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| T |
30741843 |
gaatgtgtatataatgttgtaattgcacgatttattctacactaccattcacatcaaatatataattca |
30741775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 217
Target Start/End: Complemental strand, 30579130 - 30579051
Alignment:
| Q |
138 |
ttattttacattatcattcaaatcaattatataattcatatcgatttaaaaaataatttggtattgaatgtaaactaaaa |
217 |
Q |
| |
|
||||| |||||||||||||| || |||| |||||||| ||| |||||| |||||||||| ||||||||||||| |||| |
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|
| T |
30579130 |
ttattctacattatcattcatattaattgtataattcctattgatttactaaataatttgacattgaatgtaaaccaaaa |
30579051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 32384636 - 32384598
Alignment:
| Q |
106 |
tgaatgtgtatttaattttgtaattgcatgatttatttt |
144 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32384636 |
tgaatgtgtatttaattttgtaattgcatgatttttttt |
32384598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 217
Target Start/End: Complemental strand, 32391682 - 32391568
Alignment:
| Q |
107 |
gaatgtgtatttaattttgtaattgcatgatttattttac----attatcattcaaatcaattatataattcatatcgatttaaaaaataatttggtatt |
202 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||| |||||| ||| ||||| ||||| |||| |||||||| ||||| |||||||| | |||| |
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| T |
32391682 |
gaatgtgcatttacttttgtaattgcatgattttttttacctacattctcatttgcatcaaatatacgattcatatttatttacaaaataatgttatatt |
32391583 |
T |
|
| Q |
203 |
gaatgtaaactaaaa |
217 |
Q |
| |
|
||||||||||||||| |
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|
| T |
32391582 |
gaatgtaaactaaaa |
32391568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 23410279 - 23410230
Alignment:
| Q |
126 |
taattgcatgatttattttacattatcattcaaatcaattatataattca |
175 |
Q |
| |
|
||||||||| ||||||| ||||||||||||| ||||||| ||||||||| |
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|
| T |
23410279 |
taattgcattatttattcaacattatcattcacatcaattttataattca |
23410230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 32611089 - 32611150
Alignment:
| Q |
144 |
tacattatcattcaaatcaattatataattcatatcgatttaaaaaataatttggtattgaa |
205 |
Q |
| |
|
|||||| ||||||| || | ||||||||||||||| ||||| |||||||||||| |||||| |
|
|
| T |
32611089 |
tacattctcattcacataagttatataattcatattgatttccaaaataatttggaattgaa |
32611150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 242
Target Start/End: Original strand, 4227371 - 4227499
Alignment:
| Q |
114 |
tatttaattttgtaattgcatgatttattttacattatcattcaaatcaattatataattcatatcgatttaaaaaataatttggtattgaatgtaaact |
213 |
Q |
| |
|
||||||| ||| ||||| ||||||||||| |||||||||||||| ||||||||| ||||||| || ||||| ||||||| |||||| ||||| ||||| |
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| T |
4227371 |
tatttaaatttttaatttcatgatttattctacattatcattcacatcaattatgtaattcacattgatttgcaaaataaattggtactgaatataaaca |
4227470 |
T |
|
| Q |
214 |
aaaactgcttttaaaaattattcgtatat |
242 |
Q |
| |
|
||| || |||| ||||| |||| ||||| |
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|
| T |
4227471 |
gaaattgtttttcaaaatgattcatatat |
4227499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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