View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5855_high_7 (Length: 489)

Name: NF5855_high_7
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5855_high_7
NF5855_high_7
[»] chr5 (26 HSPs)
chr5 (197-396)||(30704336-30704535)
chr5 (237-356)||(43262683-43262804)
chr5 (394-478)||(30704630-30704712)
chr5 (150-324)||(42034781-42034967)
chr5 (215-357)||(7156084-7156226)
chr5 (405-478)||(30658471-30658544)
chr5 (182-337)||(13312611-13312776)
chr5 (405-478)||(30052235-30052308)
chr5 (149-337)||(35922745-35922943)
chr5 (144-324)||(22169482-22169672)
chr5 (259-326)||(19621492-19621559)
chr5 (182-262)||(15221662-15221742)
chr5 (182-262)||(19621565-19621645)
chr5 (259-309)||(30045888-30045938)
chr5 (165-223)||(35922627-35922685)
chr5 (259-305)||(38521987-38522033)
chr5 (196-262)||(43262793-43262859)
chr5 (259-324)||(33958999-33959064)
chr5 (165-264)||(22169376-22169475)
chr5 (259-301)||(2477302-2477344)
chr5 (259-309)||(43461720-43461770)
chr5 (149-256)||(36169303-36169410)
chr5 (172-223)||(31189710-31189761)
chr5 (448-478)||(30064156-30064186)
chr5 (149-225)||(33958878-33958954)
chr5 (207-263)||(38522059-38522115)
[»] chr6 (30 HSPs)
chr6 (33-184)||(3222838-3222991)
chr6 (182-309)||(10304632-10304769)
chr6 (166-337)||(9068419-9068599)
chr6 (259-337)||(33815035-33815112)
chr6 (144-354)||(2834958-2835179)
chr6 (172-337)||(3222444-3222620)
chr6 (192-337)||(138656-138811)
chr6 (192-337)||(146677-146832)
chr6 (165-297)||(2430521-2430664)
chr6 (192-262)||(30056067-30056138)
chr6 (165-263)||(3222351-3222448)
chr6 (165-263)||(22608280-22608377)
chr6 (151-257)||(7915696-7915803)
chr6 (259-324)||(3620779-3620844)
chr6 (166-262)||(7706779-7706876)
chr6 (260-305)||(9474673-9474718)
chr6 (165-258)||(11108173-11108266)
chr6 (166-263)||(23595074-23595171)
chr6 (201-256)||(2365649-2365704)
chr6 (182-257)||(7706935-7707010)
chr6 (165-298)||(23595195-23595336)
chr6 (165-259)||(24386312-24386406)
chr6 (144-259)||(22608461-22608580)
chr6 (206-262)||(2430650-2430706)
chr6 (164-235)||(11108083-11108154)
chr6 (182-225)||(13767139-13767182)
chr6 (197-263)||(10304792-10304858)
chr6 (165-223)||(20084595-20084653)
chr6 (197-263)||(33815108-33815174)
chr6 (261-297)||(7706862-7706898)
[»] chr3 (36 HSPs)
chr3 (149-346)||(27335291-27335488)
chr3 (196-337)||(3785975-3786125)
chr3 (166-337)||(31545629-31545810)
chr3 (166-297)||(18733538-18733668)
chr3 (211-346)||(27364960-27365094)
chr3 (228-348)||(27326016-27326135)
chr3 (228-348)||(27332253-27332372)
chr3 (196-337)||(3823664-3823815)
chr3 (259-337)||(42637975-42638052)
chr3 (182-321)||(26308571-26308721)
chr3 (196-295)||(33488301-33488400)
chr3 (259-337)||(4169124-4169201)
chr3 (259-337)||(13358111-13358188)
chr3 (148-324)||(19280223-19280410)
chr3 (164-337)||(22432343-22432526)
chr3 (259-325)||(27707697-27707763)
chr3 (182-326)||(39126187-39126343)
chr3 (261-309)||(1705691-1705739)
chr3 (165-264)||(3823570-3823669)
chr3 (259-309)||(11501310-11501360)
chr3 (259-309)||(19624345-19624395)
chr3 (259-337)||(42481313-42481390)
chr3 (196-324)||(5341901-5342040)
chr3 (259-324)||(44080282-44080346)
chr3 (165-263)||(1705762-1705858)
chr3 (259-325)||(27079315-27079381)
chr3 (259-325)||(27085112-27085178)
chr3 (165-264)||(3785881-3785980)
chr3 (259-294)||(9710743-9710778)
chr3 (165-223)||(9710850-9710908)
chr3 (193-263)||(19280145-19280215)
chr3 (259-337)||(34627318-34627396)
chr3 (197-263)||(42638048-42638114)
chr3 (283-337)||(11509916-11509969)
chr3 (197-262)||(27079388-27079453)
chr3 (197-262)||(27085185-27085250)
[»] scaffold0291 (1 HSPs)
scaffold0291 (206-356)||(5851-6000)
[»] chr4 (26 HSPs)
chr4 (172-356)||(24669178-24669361)
chr4 (197-337)||(1966780-1966928)
chr4 (180-338)||(42908579-42908747)
chr4 (259-324)||(33179778-33179843)
chr4 (166-324)||(17633257-17633425)
chr4 (259-309)||(16583636-16583686)
chr4 (165-337)||(19596795-19596978)
chr4 (173-262)||(24669099-24669189)
chr4 (261-337)||(9809087-9809162)
chr4 (165-257)||(17633439-17633531)
chr4 (196-263)||(9809024-9809091)
chr4 (173-263)||(16583523-16583613)
chr4 (259-307)||(8740810-8740858)
chr4 (182-309)||(14351102-14351240)
chr4 (165-263)||(9810679-9810777)
chr4 (259-324)||(33249635-33249700)
chr4 (259-308)||(55666845-55666894)
chr4 (261-325)||(9810784-9810848)
chr4 (197-264)||(55666916-55666982)
chr4 (259-337)||(35544439-35544515)
chr4 (259-304)||(2433756-2433801)
chr4 (164-256)||(9810866-9810959)
chr4 (166-225)||(19746952-19747011)
chr4 (166-225)||(19792795-19792854)
chr4 (182-225)||(25007632-25007675)
chr4 (156-235)||(19596689-19596769)
[»] chr7 (23 HSPs)
chr7 (182-356)||(32964757-32964929)
chr7 (149-337)||(28804884-28805085)
chr7 (165-337)||(21589636-21589818)
chr7 (183-337)||(21548465-21548629)
chr7 (174-337)||(31303466-31303638)
chr7 (165-263)||(31303372-31303470)
chr7 (241-356)||(46943743-46943858)
chr7 (196-324)||(4290852-4290990)
chr7 (259-337)||(20556779-20556856)
chr7 (164-262)||(22033158-22033255)
chr7 (149-262)||(5083690-5083803)
chr7 (182-323)||(18312852-18313004)
chr7 (259-337)||(22740678-22740755)
chr7 (196-262)||(15958258-15958324)
chr7 (165-262)||(28805116-28805213)
chr7 (259-305)||(5174910-5174956)
chr7 (197-263)||(20556717-20556783)
chr7 (259-310)||(27523506-27523557)
chr7 (197-263)||(18312778-18312844)
chr7 (259-324)||(5083811-5083875)
chr7 (182-263)||(5083883-5083964)
chr7 (182-262)||(20556867-20556947)
chr7 (149-244)||(22740058-22740154)
[»] chr1 (22 HSPs)
chr1 (182-356)||(5855111-5855282)
chr1 (144-337)||(29676978-29677181)
chr1 (196-352)||(2996010-2996165)
chr1 (172-325)||(5831556-5831720)
chr1 (150-305)||(34490231-34490399)
chr1 (259-310)||(42604257-42604308)
chr1 (196-305)||(29167756-29167875)
chr1 (144-224)||(28499662-28499742)
chr1 (182-309)||(38951947-38952085)
chr1 (199-337)||(9468121-9468261)
chr1 (183-305)||(25238520-25238653)
chr1 (259-297)||(2569960-2569998)
chr1 (259-337)||(34364244-34364321)
chr1 (182-262)||(9929870-9929950)
chr1 (149-235)||(13351010-13351097)
chr1 (193-260)||(38244801-38244868)
chr1 (153-262)||(13350889-13350999)
chr1 (165-223)||(42604128-42604186)
chr1 (190-262)||(2569900-2569974)
chr1 (196-262)||(5855056-5855122)
chr1 (181-221)||(517546-517586)
chr1 (197-225)||(29168551-29168579)
[»] chr8 (24 HSPs)
chr8 (182-356)||(15233222-15233395)
chr8 (149-337)||(38606725-38606924)
chr8 (192-350)||(28700149-28700307)
chr8 (261-324)||(29367076-29367139)
chr8 (144-308)||(5573821-5573997)
chr8 (259-309)||(5321981-5322031)
chr8 (182-337)||(15714626-15714791)
chr8 (165-263)||(33286136-33286234)
chr8 (259-308)||(1240920-1240969)
chr8 (166-223)||(28700060-28700117)
chr8 (165-263)||(1251568-1251666)
chr8 (259-337)||(26493356-26493432)
chr8 (259-308)||(1251496-1251545)
chr8 (172-263)||(5573706-5573797)
chr8 (197-263)||(38606920-38606986)
chr8 (182-263)||(5322054-5322135)
chr8 (259-324)||(31596820-31596884)
chr8 (166-262)||(15233138-15233233)
chr8 (195-262)||(6295937-6296004)
chr8 (196-263)||(31596745-31596812)
chr8 (278-325)||(32959584-32959631)
chr8 (259-325)||(6809819-6809885)
chr8 (259-295)||(24575926-24575962)
chr8 (167-235)||(24576180-24576248)
[»] chr2 (11 HSPs)
chr2 (149-337)||(30905948-30906147)
chr2 (165-337)||(1400688-1400870)
chr2 (166-309)||(34175159-34175302)
chr2 (196-308)||(28527268-28527391)
chr2 (259-338)||(45305978-45306056)
chr2 (166-263)||(30906143-30906240)
chr2 (165-324)||(33667340-33667510)
chr2 (259-337)||(43900541-43900618)
chr2 (165-256)||(41212411-41212501)
chr2 (165-257)||(45305886-45305978)
chr2 (197-263)||(43900479-43900545)
[»] scaffold0043 (1 HSPs)
scaffold0043 (228-348)||(87024-87143)
[»] scaffold0024 (1 HSPs)
scaffold0024 (185-352)||(112143-112310)
[»] scaffold1126 (2 HSPs)
scaffold1126 (196-337)||(154-305)
scaffold1126 (165-263)||(301-399)
[»] scaffold0251 (2 HSPs)
scaffold0251 (259-325)||(10634-10700)
scaffold0251 (165-263)||(10707-10805)
[»] scaffold0126 (2 HSPs)
scaffold0126 (166-225)||(21433-21492)
scaffold0126 (197-260)||(21575-21638)
[»] scaffold0123 (2 HSPs)
scaffold0123 (259-305)||(24040-24086)
scaffold0123 (181-263)||(24112-24196)
[»] scaffold0213 (1 HSPs)
scaffold0213 (193-256)||(24738-24801)
[»] scaffold0016 (1 HSPs)
scaffold0016 (186-223)||(49447-49484)


Alignment Details
Target: chr5 (Bit Score: 172; Significance: 3e-92; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 197 - 396
Target Start/End: Original strand, 30704336 - 30704535
Alignment:
Q  197 aaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactatttatttggttaactaagtggaaaaatagtggtcacg 296  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30704336 aaaatttcagttaatcaaatatatggtctccgtgactacgtttatttagttgcgtgatcactatttatttggttaactaagtggaaaaatagtggtcacg 30704435  T
Q  297 cgcattttagttgtgcgaccacattttttcagcttttaaatgctagaaaaatagtggtcattggtcacgctgaaatttttcaaagtcgtataaagaagtg 396  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||  ||||||||||||    
T  30704436 cgcattttagttgtgcgaccacattttttcagcttttaaatgctggaaaaataatggtcattggtcacgctgaaatttttcaaagtgatataaagaagtg 30704535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 237 - 356
Target Start/End: Original strand, 43262683 - 43262804
Alignment:
Q  237 tttatttagttgcgtgaccactatttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacatttt--ttcagctttta 334  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||    
T  43262683 tttatttagttgcgtgaccattatctatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgtgaccacatttttcttcagctttta 43262782  T
Q  335 aatgctagaaaaatagtggtca 356  Q
    |||| | |||||||||| ||||    
T  43262783 aatgttggaaaaatagtagtca 43262804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 394 - 478
Target Start/End: Original strand, 30704630 - 30704712
Alignment:
Q  394 gtggtatgccttttttcttgcgctgaagagcacatcttaatatctatatacttgaaggatccgattgatttttcatggctccttt 478  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30704630 gtggtatgccttttt-cttgcg-tgaagagcacatcttaatatctatatacttgaaggatccgattgatttttcatggctccttt 30704712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 150 - 324
Target Start/End: Complemental strand, 42034967 - 42034781
Alignment:
Q  150 atgatagatagacatctt-aatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttg 248  Q
    ||||||| |||||||||| |||  |||||||| |||||| || ||||||||||||||||| | |||||||||||| |  || | ||| ||| ||||||||    
T  42034967 atgataggtagacatctttaatgcgtacatccctttgtaccactctaaaaaatttcagttgatcaaatatatggtatgtgtaatcacatttttttagttg 42034868  T
Q  249 cgtgaccacta-----------tttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttt 324  Q
    |||||||||||           ||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||    
T  42034867 cgtgaccactagttttccaaaatttatttggttaactaagtggaaaaatagtggtcacgtgcattttagttgcgtgaccacattttt 42034781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 215 - 357
Target Start/End: Complemental strand, 7156226 - 7156084
Alignment:
Q  215 atatatggtctccgtgaccacgtttatttagttgcgtgaccactatttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcga 314  Q
    ||||||||||   |||||||| ||| |||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||  |||||||||| ||||    
T  7156226 atatatggtccgtgtgaccacatttttttagttgtgtgaccactatttatttggttaattaagtggaaaaataatggtcacgcatattttagttgcgcga 7156127  T
Q  315 ccacattttttcagcttttaaatgct-agaaaaatagtggtcat 357  Q
     |||| ||||||||||| ||||| || | |||||||||||||||    
T  7156126 tcaca-tttttcagcttctaaattctgaaaaaaatagtggtcat 7156084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 405 - 478
Target Start/End: Original strand, 30658471 - 30658544
Alignment:
Q  405 tttttcttgcgctgaagagcacatcttaatatctatatacttgaaggatccgattgatttttcatggctccttt 478  Q
    ||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  30658471 tttttcttgggctgaagagcacatcttagtatctatgtacttgaaggatccgattgatttttcatggctccttt 30658544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 182 - 337
Target Start/End: Complemental strand, 13312776 - 13312611
Alignment:
Q  182 tttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt-----------atttggtt 270  Q
    |||||| || ||| |||||||||||||||||| ||||||| | |  |||||||| ||| ||||||||||||||||||||||           ||||||||    
T  13312776 tttgtaccactctgaaaaatttcagttaaccatatatatgatttgtgtgaccacatttttttagttgcgtgaccactatttttccataatttatttggtt 13312677  T
Q  271 aactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 337  Q
    ||||||||||||||||||| | ||||||||||||||||| | |||||||| |||||||||| |||||    
T  13312676 aactaagtggaaaaatagttgccacgcgcattttagttgcgtgaccacat-ttttcagcttctaaat 13312611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 405 - 478
Target Start/End: Complemental strand, 30052308 - 30052235
Alignment:
Q  405 tttttcttgcgctgaagagcacatcttaatatctatatacttgaaggatccgattgatttttcatggctccttt 478  Q
    ||||||||| ||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||    
T  30052308 tttttcttgggctgaagagcacatcttaatatctatgcacttcaaggatccgattgatttttcatggctccttt 30052235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 149 - 337
Target Start/End: Complemental strand, 35922943 - 35922745
Alignment:
Q  149 aatgatagatagacatcttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttg 248  Q
    |||||||| ||||||||||||| |||||| |  ||||||||| | | |||||||| |||||||||||| ||||||||  | |||||  ||| || |||||    
T  35922943 aatgataggtagacatcttaatgtgtacaccgctttgtatcactttgaaaaatttaagttaaccaaatttatggtctgtgggaccatattttttaagttg 35922844  T
Q  249 cgtgaccactattt-----------atttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 337  Q
    | ||||||||||||           |||||||||||||| |||||||||||||||||  ||||||||||||| | |||||||| |||||||||| |||||    
T  35922843 catgaccactattttttcagaatttatttggttaactaaatggaaaaatagtggtcatacgcattttagttgcgtgaccacat-ttttcagcttctaaat 35922745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 144 - 324
Target Start/End: Complemental strand, 22169672 - 22169482
Alignment:
Q  144 agagaaatgatagatagacatcttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttattt 243  Q
    |||| |||||||| |  ||| ||||||||||||| || |||||| || ||| |||| ||| |||||||||||| |||| | |  |||||||| ||| |||    
T  22169672 agagcaatgataggtgcacaccttaatctgtacaccc-tttgtaccactctgaaaatttttagttaaccaaatttatgatatgtgtgaccacattttttt 22169574  T
Q  244 agttgcgtgaccactattt-----------atttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttt 324  Q
    ||||||||||||| |||||           ||||||||||||| || |||||||||||||||||||||||||||||| | ||||||||||||    
T  22169573 agttgcgtgaccattattttttcaaaatttatttggttaactacgttgaaaaatagtggtcacgcgcattttagttgcgtgaccacattttt 22169482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 259 - 326
Target Start/End: Original strand, 19621492 - 19621559
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttc 326  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||| |||||||    
T  19621492 atttatttggttaactaagtggaaaaatagtggtcacgcacattttagttgcgtgaccacgttttttc 19621559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 15221742 - 15221662
Alignment:
Q  182 tttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt 262  Q
    ||||||||||||| |||||||||||||||| |||||||||||||  |||||||| ||| |||| ||| |||||||||||||    
T  15221742 tttgtatcattctgaaaaatttcagttaactaaatatatggtctgtgtgaccacatttttttaattgtgtgaccactattt 15221662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 19621645 - 19621565
Alignment:
Q  182 tttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt 262  Q
    |||||| |||||| |||||||||||||||||||||||||||| |  |||||||| ||| |  | |||||||||||||||||    
T  19621645 tttgtaccattctgaaaaatttcagttaaccaaatatatggtatgtgtgaccacatttttccatttgcgtgaccactattt 19621565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 259 - 309
Target Start/End: Complemental strand, 30045938 - 30045888
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttg 309  Q
    |||||||||||||| ||| ||||||||||||||||||||| ||||||||||    
T  30045938 atttatttggttaattaaatggaaaaatagtggtcacgcgtattttagttg 30045888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 35922627 - 35922685
Alignment:
Q  165 cttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggt 223  Q
    |||||| ||||||||| ||||||||| ||| ||||||||||||||| ||||||||||||    
T  35922627 cttaatgtgtacatccctttgtatcactctgaaaaatttcagttaatcaaatatatggt 35922685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 259 - 305
Target Start/End: Original strand, 38521987 - 38522033
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcatttta 305  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||    
T  38521987 atttatttagttaactaagtgtaaaaatagtggtcacgcgcatttta 38522033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 196 - 262
Target Start/End: Complemental strand, 43262859 - 43262793
Alignment:
Q  196 aaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt 262  Q
    ||||||||||||||||||||||||||||||  |||||||| ||| |||||||  ||||| |||||||    
T  43262859 aaaaatttcagttaaccaaatatatggtctgtgtgaccacatttgtttagttatgtgactactattt 43262793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 259 - 324
Target Start/End: Original strand, 33958999 - 33959064
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttt 324  Q
    ||||||||||| |||||||||||||||||||||| || || |||||||||| | ||||| ||||||    
T  33958999 atttatttggtcaactaagtggaaaaatagtggttactcggattttagttgcgtgaccatattttt 33959064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 264
Target Start/End: Original strand, 22169376 - 22169475
Alignment:
Q  165 cttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactatttat 264  Q
    |||||| |||||| ||  |||||||||| |  ||||||||||||||| ||||||||||  |  |||| ||| ||| || |||||||||||||||||||||    
T  22169376 cttaatgtgtacaccctattgtatcatttttgaaaatttcagttaactaaatatatggaatatgtgatcacattttttcagttgcgtgaccactatttat 22169475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 301
Target Start/End: Complemental strand, 2477344 - 2477302
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcat 301  Q
    |||||||||||||||||||| |||||||||||| |||||||||    
T  2477344 atttatttggttaactaagtcgaaaaatagtggccacgcgcat 2477302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 309
Target Start/End: Original strand, 43461720 - 43461770
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttg 309  Q
    |||||||||||| ||||||||||||||||||||| ||| | ||||||||||    
T  43461720 atttatttggtttactaagtggaaaaatagtggttacgtgaattttagttg 43461770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 256
Target Start/End: Original strand, 36169303 - 36169410
Alignment:
Q  149 aatgatagatagaca-tcttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagtt 247  Q
    |||||||| |||||| ||||||| ||||| ||  |||||| || | | |||||||| |||||||||||||||||||    |||||||| ||| |||||||    
T  36169303 aatgataggtagacactcttaatgtgtacttctctttgtaccactttgaaaaattttagttaaccaaatatatggtaggtgtgaccacattt-tttagtt 36169401  T
Q  248 gcgtgacca 256  Q
    |||||||||    
T  36169402 gcgtgacca 36169410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 31189761 - 31189710
Alignment:
Q  172 tgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggt 223  Q
    |||||| || |||||| || | ||||||||||||||||||||||||||||||    
T  31189761 tgtacacccctttgtaccactttaaaaaatttcagttaaccaaatatatggt 31189710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 448 - 478
Target Start/End: Complemental strand, 30064186 - 30064156
Alignment:
Q  448 aaggatccgattgatttttcatggctccttt 478  Q
    |||||||||||||||||||||||||||||||    
T  30064186 aaggatccgattgatttttcatggctccttt 30064156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 33958878 - 33958954
Alignment:
Q  149 aatgatagatagacatc-ttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtct 225  Q
    |||||||| |||||| | ||||| |||| |||| |||||| || ||| |||||||||| |||||||||||||||||||    
T  33958878 aatgataggtagacacccttaatatgtatatcc-tttgtaccactctgaaaaatttcacttaaccaaatatatggtct 33958954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 38522115 - 38522059
Alignment:
Q  207 ttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 263  Q
    |||||||||||||||||||  |||||||| ||| || | |||| |||||||||||||    
T  38522115 ttaaccaaatatatggtctatgtgaccacattttttcaattgcatgaccactattta 38522059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 1e-57; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 33 - 184
Target Start/End: Complemental strand, 3222991 - 3222838
Alignment:
Q  33 tatctatcacacaaaaatggatataccaaatcaacatgcatgcaaaatatctagtttttgaacatccatgttggttttaaggccacttttgacttaatat 132  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3222991 tatctattacacaaaaatgcatataccaaatcaacatgcatgcaaattatctagtttttgaacatccatgttggttttaaggccacttttgacttaatat 3222892  T
Q  133 atatc-ttttagagagaaatgatagatagacatc-ttaatctgtacatccattt 184  Q
    ||||| |||||||||| ||||||||||||||||| ||||| ||||||| |||||    
T  3222891 atatctttttagagaggaatgatagatagacatctttaatgtgtacattcattt 3222838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 182 - 309
Target Start/End: Original strand, 10304632 - 10304769
Alignment:
Q  182 tttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccact-----------atttatttggtt 270  Q
    |||||| || ||||||||||||||||||||||||||||||||||  ||||||||  || |||| |||||||||||||           ||||||||||||    
T  10304632 tttgtaccactctaaaaaatttcagttaaccaaatatatggtctgtgtgaccacactt-tttaattgcgtgaccactttttttccagaatttatttggtt 10304730  T
Q  271 aactaagtggaaaaatagtggtcacgcgcattttagttg 309  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  10304731 aactaagtgaaaaaatagtggtcacgcgcattttagttg 10304769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 166 - 337
Target Start/End: Complemental strand, 9068599 - 9068419
Alignment:
Q  166 ttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactatttat- 264  Q
    ||||| |||||| || |||||| || ||| |||||||| |||||| |||||||||||| |  |||||||| ||| |||||||||||||||||||||| |     
T  9068599 ttaatgtgtacacccttttgtaccactctgaaaaattttagttaatcaaatatatggtatgtgtgaccacatttttttagttgcgtgaccactatttttc 9068500  T
Q  265 ---------ttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 337  Q
             || ||| ||||||||||||||||||  ||||||||||||||| |||| ||||||| |||||||||||||||||    
T  9068499 cagaacttatttgtttactaagtggaaaaatagtaatcacgcgcattttagatgtgtgaccaca-tttttcagcttttaaat 9068419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 259 - 337
Target Start/End: Original strand, 33815035 - 33815112
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 337  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||| ||||||||||| |||||    
T  33815035 atttatttggttaactaagtggaaaaatggtggtcacgcgcattttagttgcgtgaccaca-tttttcagcttctaaat 33815112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 144 - 354
Target Start/End: Complemental strand, 2835179 - 2834958
Alignment:
Q  144 agagaaatgatagatagacatc-ttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatt 242  Q
    |||| |||||||| |||||| | ||||| |||| ||| ||||||| || ||| |||||||| |||||||||||||||   |||  |||||||| ||| ||    
T  2835179 agagcaatgataggtagacagccttaatgtgtatatcaatttgtaccactctgaaaaatttaagttaaccaaatataccatctgtgtgaccacatttttt 2835080  T
Q  243 tagttgcgtgaccactattt-----------atttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagctt 331  Q
    |||||| || ||||||||||           |||| |||| ||||||||||||||| |||||||||| ||||||||||   ||||| | |||||||||||    
T  2835079 tagttgtgtaaccactatttttccataatttatttagttagctaagtggaaaaataatggtcacgcgtattttagttgcatgaccata-tttttcagctt 2834981  T
Q  332 ttaaatgctagaaaaatagtggt 354  Q
    |||||| ||| ||||||||||||    
T  2834980 ttaaatactaaaaaaatagtggt 2834958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 172 - 337
Target Start/End: Complemental strand, 3222620 - 3222444
Alignment:
Q  172 tgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactat----------- 260  Q
    ||||||| | ||||||||| |||||||||  | |||||| ||||||||||||||  |||||||| ||| | ||||| ||||||||||||               
T  3222620 tgtacattcgtttgtatcactctaaaaaagattagttaatcaaatatatggtctgtgtgaccacatttttctagttacgtgaccactatattttccagaa 3222521  T
Q  261 -ttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 337  Q
     ||||||||||||||||||||||||||||||||||||  ||||||||||| | |||| || ||||||||| |||||||    
T  3222520 tttatttggttaactaagtggaaaaatagtggtcacgtacattttagttgcgtgaccgca-tttttcagcatttaaat 3222444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 192 - 337
Target Start/End: Original strand, 138656 - 138811
Alignment:
Q  192 tctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt-----------atttggttaactaagtgg 280  Q
    ||||||||| || |||||||||||||||||||||  ||| |||| |||  |||||||||||||||||||||           |||||||| |||||||||    
T  138656 tctaaaaaaatttagttaaccaaatatatggtctgtgtggccacattttcttagttgcgtgaccactattttttcagaatttatttggttgactaagtgg 138755  T
Q  281 aaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 337  Q
    ||||||||||||| ||| || |||||||| | ||||||| ||||||||||| |||||    
T  138756 aaaaatagtggtcgcgcacaatttagttgcgtgaccaca-tttttcagcttctaaat 138811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 192 - 337
Target Start/End: Original strand, 146677 - 146832
Alignment:
Q  192 tctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt-----------atttggttaactaagtgg 280  Q
    ||||||||| || |||||||||||||||||||||  ||| |||| |||  |||||||||||||||||||||           |||||||| |||||||||    
T  146677 tctaaaaaaatttagttaaccaaatatatggtctgtgtggccacattttcttagttgcgtgaccactattttttcagaatttatttggttgactaagtgg 146776  T
Q  281 aaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 337  Q
    ||||||||||||| ||| || |||||||| | ||||||| ||||||||||| |||||    
T  146777 aaaaatagtggtcgcgcacaatttagttgcgtgaccaca-tttttcagcttctaaat 146832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 165 - 297
Target Start/End: Original strand, 2430521 - 2430664
Alignment:
Q  165 cttaatctgtacatccatttgtatcattct-aaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccact----- 258  Q
    |||||| ||||||| | |||||| |||||| ||||||||||||||||| ||||||||| |||  |||||||  ||| ||||||||| ||||||||         
T  2430521 cttaatgtgtacattcctttgtaccattctgaaaaaatttcagttaactaaatatatgatctgtgtgacca-ttttttttagttgcatgaccactatttt 2430619  T
Q  259 ------atttatttggttaactaagtggaaaaatagtggtcacgc 297  Q
          |||||||||||||||||||||||||||||||||||||||    
T  2430620 ttcagaatttatttggttaactaagtggaaaaatagtggtcacgc 2430664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 192 - 262
Target Start/End: Original strand, 30056067 - 30056138
Alignment:
Q  192 tctaaaaaatttcagttaaccaaatatatggtctccgtgaccac-gtttatttagttgcgtgaccactattt 262  Q
    ||||||||||||||||||||||||||||||||||  ||||||||  ||| ||| ||||||||||||||||||    
T  30056067 tctaaaaaatttcagttaaccaaatatatggtctatgtgaccacatttttttttgttgcgtgaccactattt 30056138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 165 - 263
Target Start/End: Original strand, 3222351 - 3222448
Alignment:
Q  165 cttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 263  Q
    |||||| |||||| || ||||||| | ||| ||||||||||  |||||||||||||||| || |||||||| ||| || ||||||||||||||||||||    
T  3222351 cttaatgtgtacaccc-tttgtattactcttaaaaatttcaaataaccaaatatatggtgtctgtgaccacattttttcagttgcgtgaccactattta 3222448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 165 - 263
Target Start/End: Original strand, 22608280 - 22608377
Alignment:
Q  165 cttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 263  Q
    |||||| |||||| || |||||| || ||| |||||||| |||||||||||||||||||||  ||||| || ||| || ||||||||||||||||||||    
T  22608280 cttaatgtgtacacccctttgtaccactctcaaaaattttagttaaccaaatatatggtctgtgtgactacattt-ttcagttgcgtgaccactattta 22608377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 257
Target Start/End: Complemental strand, 7915803 - 7915696
Alignment:
Q  151 tgatagatagacat-cttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgc 249  Q
    |||||||||||||| |||||| |||||| ||  || || || ||| ||||||||||||||| ||||||||| ||||  ||||||||  || |||||||||    
T  7915803 tgatagatagacattcttaatgtgtacaccctcttttaccactctgaaaaatttcagttaatcaaatatatcgtctgtgtgaccacaattttttagttgc 7915704  T
Q  250 gtgaccac 257  Q
    ||||||||    
T  7915703 gtgaccac 7915696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 259 - 324
Target Start/End: Original strand, 3620779 - 3620844
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttt 324  Q
    ||||||||||||||||||||| |||||||||||||||    |||||||||||| || |||||||||    
T  3620779 atttatttggttaactaagtgaaaaaatagtggtcacatatattttagttgtgtgatcacattttt 3620844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 166 - 262
Target Start/End: Original strand, 7706779 - 7706876
Alignment:
Q  166 ttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttattt-agttgcgtgaccactattt 262  Q
    ||||| ||||||||| |||||| |||||| |||||||| ||||||   |||||||||| |  |||||||| ||| ||| |||||||||||||||||||    
T  7706779 ttaatgtgtacatccttttgtaccattctgaaaaattttagttaatataatatatggtttgtgtgaccacatttttttcagttgcgtgaccactattt 7706876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 9474718 - 9474673
Alignment:
Q  260 tttatttggttaactaagtggaaaaatagtggtcacgcgcatttta 305  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||    
T  9474718 tttatttggttaactaagtgaaaaaatagtggtcacacgcatttta 9474673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 258
Target Start/End: Complemental strand, 11108266 - 11108173
Alignment:
Q  165 cttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccact 258  Q
    |||||| |||| |||  ||||||| ||||||||||| |||| ||||||||||||||| | |  |||||||| ||| || |||||||||||||||    
T  11108266 cttaatgtgtatatctttttgtattattctaaaaaaattcaattaaccaaatatatgatttgtgtgaccacattttttcagttgcgtgaccact 11108173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 166 - 263
Target Start/End: Original strand, 23595074 - 23595171
Alignment:
Q  166 ttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 263  Q
    ||||| |||||| || ||||||||| |||  ||||||| ||||||| |||||||||||||  |||||||  ||| |||||||| ||||| ||||||||    
T  23595074 ttaatgtgtacacccttttgtatcactctcgaaaatttaagttaactaaatatatggtctgtgtgaccatatttttttagttgtgtgacaactattta 23595171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 201 - 256
Target Start/End: Complemental strand, 2365704 - 2365649
Alignment:
Q  201 tttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgacca 256  Q
    ||||||||||||||||||||||| | ||||||||| ||| || |||||||||||||    
T  2365704 tttcagttaaccaaatatatggtatgcgtgaccacattttttcagttgcgtgacca 2365649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 182 - 257
Target Start/End: Complemental strand, 7707010 - 7706935
Alignment:
Q  182 tttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccac 257  Q
    ||||||||||| |||||||||||||||||| |||||||| ||||  || || || ||| |||||||||| ||||||    
T  7707010 tttgtatcattttaaaaaatttcagttaactaaatatatagtctgtgtaactacatttttttagttgcgagaccac 7706935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 298
Target Start/End: Complemental strand, 23595336 - 23595195
Alignment:
Q  165 cttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccact------ 258  Q
    |||||| |||||| || ||||||| | |||||||||||||| |||||||||||||| ||||  |||||||| ||| ||| |||  |||||||||          
T  23595336 cttaatatgtacacccttttgtattactctaaaaaatttcaattaaccaaatatatagtctgtgtgaccacattt-ttttgtt--gtgaccactaatttt 23595240  T
Q  259 -----atttatttggttaactaagtggaaaaatagtggtcacgcg 298  Q
         |||||||| |||||||||||||||||||||||| ||||||    
T  23595239 tcagaatttattttgttaactaagtggaaaaatagtggccacgcg 23595195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 259
Target Start/End: Complemental strand, 24386406 - 24386312
Alignment:
Q  165 cttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccacta 259  Q
    |||||| ||||||||| ||| || ||  || |||||||| |||||||||||||||||||||  |||||||| | | ||| ||||||||| |||||    
T  24386406 cttaatgtgtacatccctttataccacgctgaaaaatttaagttaaccaaatatatggtctgtgtgaccacatattttttgttgcgtgatcacta 24386312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 144 - 259
Target Start/End: Complemental strand, 22608580 - 22608461
Alignment:
Q  144 agagaaatgatagatagaca-tcttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatat---atggtctccgtgaccacgttt 239  Q
    |||||||| |||| |||||| | ||||| |||||| || ||||||||||| | |||| ||||||||||||||||||   ||| |||  |||||||  ||     
T  22608580 agagaaataataggtagacacttttaatatgtacacccctttgtatcattttgaaaattttcagttaaccaaatattatatgatctgtgtgaccatattg 22608481  T
Q  240 atttagttgcgtgaccacta 259  Q
     |||||||||||||||||||    
T  22608480 ttttagttgcgtgaccacta 22608461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 206 - 262
Target Start/End: Complemental strand, 2430706 - 2430650
Alignment:
Q  206 gttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt 262  Q
    |||||||||||||||||| |  |||||||| ||| || |||||||||||||||||||    
T  2430706 gttaaccaaatatatggtttgtgtgaccacattttttcagttgcgtgaccactattt 2430650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 235
Target Start/End: Original strand, 11108083 - 11108154
Alignment:
Q  164 tcttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccac 235  Q
    ||||||| ||||||| || |||||  | ||| |||||||||| |||||||||||||||||||  ||||||||    
T  11108083 tcttaatgtgtacattcacttgtactactctgaaaaatttcaattaaccaaatatatggtctgtgtgaccac 11108154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 13767139 - 13767182
Alignment:
Q  182 tttgtatcattctaaaaaatttcagttaaccaaatatatggtct 225  Q
    ||||||||| |||| ||||||| |||||||||||||||||||||    
T  13767139 tttgtatcactctagaaaatttaagttaaccaaatatatggtct 13767182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 263
Target Start/End: Complemental strand, 10304858 - 10304792
Alignment:
Q  197 aaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 263  Q
    ||||||| ||| ||| |||||||||||||  |||||||| ||| || |||||||||| |||||||||    
T  10304858 aaaattttagtgaactaaatatatggtctgtgtgaccacattttttcagttgcgtgatcactattta 10304792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 20084595 - 20084653
Alignment:
Q  165 cttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggt 223  Q
    |||||| ||||||||| ||| || ||| || |||||||| |||||||||||||||||||    
T  20084595 cttaatgtgtacatccctttataccatgctgaaaaatttaagttaaccaaatatatggt 20084653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 263
Target Start/End: Complemental strand, 33815174 - 33815108
Alignment:
Q  197 aaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 263  Q
    |||| |||| ||||| |||||||| ||||  |||||||| ||| || ||||||||||||||||||||    
T  33815174 aaaacttcaattaactaaatatatagtctgtgtgaccacattttttcagttgcgtgaccactattta 33815108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 297
Target Start/End: Complemental strand, 7706898 - 7706862
Alignment:
Q  261 ttatttggttaactaagtggaaaaatagtggtcacgc 297  Q
    |||||||||||  ||||||||||||||||||||||||    
T  7706898 ttatttggttacttaagtggaaaaatagtggtcacgc 7706862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 3e-46; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 149 - 346
Target Start/End: Original strand, 27335291 - 27335488
Alignment:
Q  149 aatgatagatagacatctt-aatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagtt 247  Q
    |||||||| || ||||||| ||| |||||| || |||||| |||||| |||| ||| ||||||||||  ||||||| |  |||||||| ||| |||||||    
T  27335291 aatgataggtaaacatctttaatgtgtacacccctttgtaccattctgaaaattttgagttaaccaataatatggtatgtgtgaccacatttttttagtt 27335390  T
Q  248 gcgtgaccactatttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaatgctagaaaa 346  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||| ||||||||||| |||||||| |||||    
T  27335391 gcgtgacaactatttatttggttaactaagtggaaaaatagtggtcacgtgtattttagttgtgtgaccaca-tttttcagcttctaaatgctggaaaa 27335488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 196 - 337
Target Start/End: Complemental strand, 3786125 - 3785975
Alignment:
Q  196 aaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt-----------atttggttaactaagtggaaaa 284  Q
    ||||||| ||||||||||||||||| ||||  |||||||||||| ||||||||||||||||||||||           ||||||||||||||||||||||    
T  3786125 aaaaattccagttaaccaaatatattgtctgtgtgaccacgttt-tttagttgcgtgaccactatttttccataatttatttggttaactaagtggaaaa 3786027  T
Q  285 atagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 337  Q
    | ||||||||||||||||||||||| | ||||| ||||||||||||| |||||    
T  3786026 a-agtggtcacgcgcattttagttgcgtgaccatattttttcagcttataaat 3785975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 166 - 337
Target Start/End: Complemental strand, 31545810 - 31545629
Alignment:
Q  166 ttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccact------- 258  Q
    ||||| ||||||||  ||||||||| ||| ||||||||||| ||||| ||||||||||||  |||||||| ||| |||||||| |||||||||           
T  31545810 ttaatatgtacatctttttgtatcactctgaaaaatttcaggtaacctaatatatggtctatgtgaccacatttttttagttgtgtgaccactatttttc 31545711  T
Q  259 ----atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 337  Q
        |||||||| ||||||||||| ||||||||||||||| || ||||||||||||| ||||||| ||||||||||| |||||    
T  31545710 cagaatttattttgttaactaagtagaaaaatagtggtcatgcacattttagttgtgtgaccaca-tttttcagcttctaaat 31545629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 166 - 297
Target Start/End: Complemental strand, 18733668 - 18733538
Alignment:
Q  166 ttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactatttatt 265  Q
    ||||| |||||| || ||| || |||||| |||||||| ||||||| ||||||||||| |  |||||||| ||| || ||||||||||| ||||||||||    
T  18733668 ttaatgtgtacacccctttataccattctgaaaaatttaagttaactaaatatatggtatgggtgaccacatttctt-agttgcgtgacaactatttatt 18733570  T
Q  266 tggttaactaagtggaaaaatagtggtcacgc 297  Q
    ||||||||||||||||||||||||| ||||||    
T  18733569 tggttaactaagtggaaaaatagtgctcacgc 18733538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 211 - 346
Target Start/End: Original strand, 27364960 - 27365094
Alignment:
Q  211 ccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactatttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgt 310  Q
    ||||||||||||| | ||||||||| ||  |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||| || ||||||| ||     
T  27364960 ccaaatatatggtatgcgtgaccacattattttagttgtgtgacaactatttatttggttaattaagtggaaaaatagtggtcacacgtattttagctgc 27365059  T
Q  311 gcgaccacattttttcagcttttaaatgctagaaaa 346  Q
    | ||| ||| |||||||| || |||||||| |||||    
T  27365060 gtgactaca-tttttcagtttctaaatgctggaaaa 27365094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 228 - 348
Target Start/End: Original strand, 27326016 - 27326135
Alignment:
Q  228 gtgaccacgtttatttagttgcgtgaccactatttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttca 327  Q
    |||||||| ||| |||||||||||||| ||||||||||| |||||| || ||||||||||||||||||  | |||||||||| | ||||||||||||| |    
T  27326016 gtgaccacatttttttagttgcgtgacaactatttatttagttaaccaactggaaaaatagtggtcacatgtattttagttgcgtgaccacatttttt-a 27326114  T
Q  328 gcttttaaatgctagaaaaat 348  Q
    | || |||||||| |||||||    
T  27326115 gtttctaaatgctggaaaaat 27326135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 228 - 348
Target Start/End: Original strand, 27332253 - 27332372
Alignment:
Q  228 gtgaccacgtttatttagttgcgtgaccactatttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttca 327  Q
    |||||||| ||| |||||||||||||| ||||||||||| |||||| || ||||||||||||||||||  | |||||||||| | ||||||||||||| |    
T  27332253 gtgaccacatttttttagttgcgtgacaactatttatttagttaaccaactggaaaaatagtggtcacatgtattttagttgcgtgaccacatttttt-a 27332351  T
Q  328 gcttttaaatgctagaaaaat 348  Q
    | || |||||||| |||||||    
T  27332352 gtttctaaatgctggaaaaat 27332372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 196 - 337
Target Start/End: Complemental strand, 3823815 - 3823664
Alignment:
Q  196 aaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt-----------atttggttaactaagtggaaaa 284  Q
    ||||||| ||||||||||||||||| ||||  |||||||||||| ||||||||||||||||||||||           ||||||||||||||||||||||    
T  3823815 aaaaattccagttaaccaaatatattgtctgtgtgaccacgttt-tttagttgcgtgaccactatttttccataatttatttggttaactaagtggaaaa 3823717  T
Q  285 atagtggtcacgcgcattttagttgtgcgaccaca-ttttttcagcttttaaat 337  Q
    | ||||||||| ||||||||||||| | ||||| | |||||||||||| |||||    
T  3823716 a-agtggtcacacgcattttagttgcgtgaccatatttttttcagcttataaat 3823664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 259 - 337
Target Start/End: Original strand, 42637975 - 42638052
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 337  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||| | ||||||| ||||||||||| |||||    
T  42637975 atttatttggttaactaagttgaaaaatagtggttacgcgcattttagttgcgtgaccaca-tttttcagcttctaaat 42638052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 182 - 321
Target Start/End: Original strand, 26308571 - 26308721
Alignment:
Q  182 tttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccacta-----------tttatttggtt 270  Q
    ||||||||| | | |||||| ||||||||| ||||||||||| |  |||||||| ||  |||||||| ||||||||||           |||||||||||    
T  26308571 tttgtatcactttgaaaaatatcagttaactaaatatatggtttgtgtgaccacattgttttagttgtgtgaccactaattttccagaatttatttggtt 26308670  T
Q  271 aactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacatt 321  Q
    || |||||||||||||||||||||||||||||||| ||| | |||||||||    
T  26308671 aagtaagtggaaaaatagtggtcacgcgcattttaattgcgtgaccacatt 26308721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 196 - 295
Target Start/End: Complemental strand, 33488400 - 33488301
Alignment:
Q  196 aaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactatttatttggttaactaagtggaaaaatagtggtcac 295  Q
    |||||||| ||||||| ||||||||||| |   ||||| | | | |||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||    
T  33488400 aaaaatttaagttaactaaatatatggtatgtatgaccgcatatttttagttgcgcgaccactatttatttggttaattaagtggaaaaattgtggtcac 33488301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 259 - 337
Target Start/End: Original strand, 4169124 - 4169201
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 337  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||| |  |||||| ||||||||||| |||||    
T  4169124 atttatttggttaactaaatggaaaaatagtggtcacgcacattttagttgcgttaccaca-tttttcagcttctaaat 4169201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 259 - 337
Target Start/End: Original strand, 13358111 - 13358188
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 337  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||| ||||| ||||| | ||||||||||| |||||    
T  13358111 atttatttggttaactatgtggaaaaatagtggtaacgcgcattttaattgtgtgaccata-tttttcagcttctaaat 13358188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 148 - 324
Target Start/End: Complemental strand, 19280410 - 19280223
Alignment:
Q  148 aaatgatagatagacatc-ttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagt 246  Q
    ||||||||| |||||| | ||||| |||||| || |||||| || ||| |||| ||| |||||| ||||||||||||||  ||||| || ||| || |||    
T  19280410 aaatgataggtagacacccttaatgtgtacacccgtttgtaccactctgaaaatttttagttaatcaaatatatggtctgtgtgacaacattttttaagt 19280311  T
Q  247 tgcgtgaccacta-----------tttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttt 324  Q
     | ||||||||||           ||||||||||||||||||||||||| ||||||||||||| |||||||||| | ||||||||||||    
T  19280310 ggtgtgaccactaatttttcaaaatttatttggttaactaagtggaaaa-tagtggtcacgcgaattttagttgcgtgaccacattttt 19280223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 164 - 337
Target Start/End: Complemental strand, 22432526 - 22432343
Alignment:
Q  164 tcttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt- 262  Q
    ||||||| |||||| || |||||| || | | |||||||| ||| || ||||||||||||||  ||||| || ||| ||||||||| ||||||||||||     
T  22432526 tcttaatgtgtacacccttttgtagcactttgaaaaatttgagtaaatcaaatatatggtctgtgtgactacatttttttagttgcatgaccactatttt 22432427  T
Q  263 ----------atttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 337  Q
              ||||||| ||||| ||||||||||||||| ||| |||||||||||||   |||||||| ||||||||||||||||    
T  22432426 ttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacat-ttttcagcttttaaat 22432343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 259 - 325
Target Start/End: Complemental strand, 27707763 - 27707697
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacatttttt 325  Q
    ||||||||||||||  ||||| |||||||||||||| || |||||||||||||||||||||||||||    
T  27707763 atttatttggttaatcaagtgaaaaaatagtggtcatgcacattttagttgtgcgaccacatttttt 27707697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 182 - 326
Target Start/End: Complemental strand, 39126343 - 39126187
Alignment:
Q  182 tttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccact-------------atttatttgg 268  Q
    ||||||| ||||| |||||||| ||||||||||||||||| |||  ||||| || ||| |||||||||||||| |||             ||||||||||    
T  39126343 tttgtattattctgaaaaatttaagttaaccaaatatatgatctgtgtgacaacatttttttagttgcgtgactactatttttttttaaaatttatttgg 39126244  T
Q  269 ttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttc 326  Q
    |||||||||||||||||||||| || ||||| ||||||||| |  |||||||||||||    
T  39126243 ttaactaagtggaaaaatagtgatcgcgcgc-ttttagttgcgtaaccacattttttc 39126187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 261 - 309
Target Start/End: Original strand, 1705691 - 1705739
Alignment:
Q  261 ttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttg 309  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1705691 ttatttggttaactaaggggaaaaatagtggtcacgcgcattttagttg 1705739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 165 - 264
Target Start/End: Original strand, 3823570 - 3823669
Alignment:
Q  165 cttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactatttat 264  Q
    |||||| |||||| || |||||| || |||  |||||||||||||||||| ||||||||||  |||||||| ||| ||  ||||||||||||||||||||    
T  3823570 cttaatgtgtacacccctttgtaccactctcgaaaatttcagttaaccaattatatggtctgtgtgaccacattttttctgttgcgtgaccactatttat 3823669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 259 - 309
Target Start/End: Complemental strand, 11501360 - 11501310
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttg 309  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  11501360 atttatttggttaactaattggaaaaatagtggtcacgcacattttagttg 11501310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 259 - 309
Target Start/End: Complemental strand, 19624395 - 19624345
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttg 309  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  19624395 atttatgtggttaactaagtggaaaaatagtggtcacgtgcattttagttg 19624345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 259 - 337
Target Start/End: Complemental strand, 42481390 - 42481313
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 337  Q
    |||||||||||||||||||| |||||||| ||||||||  ||||||||||||| ||||| | |||||||| ||||||||    
T  42481390 atttatttggttaactaagtagaaaaataatggtcacgtacattttagttgtgtgaccata-tttttcagtttttaaat 42481313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 324
Target Start/End: Complemental strand, 5342040 - 5341901
Alignment:
Q  196 aaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccact-----------atttatttggttaactaagtggaaaa 284  Q
    ||||||||||||||| | ||||||||||||  |||||||| ||| |||||||| || |||| |           ||||||||||||||||||||||||||    
T  5342040 aaaaatttcagttaatcgaatatatggtctgtgtgaccacatttttttagttgtgtaaccattatgttttcagaatttatttggttaactaagtggaaaa 5341941  T
Q  285 atagtggtcacgcgcattttagttgtgcgaccacattttt 324  Q
    ||||||||||   | |||||||||||  ||||||||||||    
T  5341940 atagtggtcatatgtattttagttgtatgaccacattttt 5341901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 44080346 - 44080282
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttt 324  Q
    |||| |||||||||||||||||||||||||||| ||||| |||||||||| || ||||||||||||    
T  44080346 atttttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacattttt 44080282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 165 - 263
Target Start/End: Complemental strand, 1705858 - 1705762
Alignment:
Q  165 cttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 263  Q
    |||||| ||||||||| | ||||||||| |||||||||||||||||||||||| ||| | |  |||| ||  | | |||||||||||||||||||||||    
T  1705858 cttaatgtgtacatccttgtgtatcattgtaaaaaatttcagttaaccaaatacatgatatgtgtgatca--tatttttagttgcgtgaccactattta 1705762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 259 - 325
Target Start/End: Original strand, 27079315 - 27079381
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacatttttt 325  Q
    ||||||||| ||||||||||||||||||  |||||||||||||||||| |  | |||||||||||||    
T  27079315 atttatttgattaactaagtggaaaaatgatggtcacgcgcattttagctacgtgaccacatttttt 27079381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 259 - 325
Target Start/End: Original strand, 27085112 - 27085178
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacatttttt 325  Q
    ||||||||| ||||||||||||||||||  |||||||||||||||||| |  | |||||||||||||    
T  27085112 atttatttgattaactaagtggaaaaatgatggtcacgcgcattttagctacgtgaccacatttttt 27085178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 264
Target Start/End: Original strand, 3785881 - 3785980
Alignment:
Q  165 cttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactatttat 264  Q
    |||||| |||||| || |||||| || |||  |||||||||||||||||| | ||||||||  |||||||| ||| ||  ||| ||||||||||||||||    
T  3785881 cttaatgtgtacacccctttgtaccactctcgaaaatttcagttaaccaattttatggtctgtgtgaccacattttttctgttacgtgaccactatttat 3785980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 259 - 294
Target Start/End: Original strand, 9710743 - 9710778
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtca 294  Q
    ||||||||||||||||||||||||||||||||||||    
T  9710743 atttatttggttaactaagtggaaaaatagtggtca 9710778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 9710908 - 9710850
Alignment:
Q  165 cttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggt 223  Q
    |||||| |||||| || |||||| || ||| ||||||||||||||||||||||||||||    
T  9710908 cttaatatgtacacccctttgtaccactctgaaaaatttcagttaaccaaatatatggt 9710850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 263
Target Start/End: Original strand, 19280145 - 19280215
Alignment:
Q  193 ctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 263  Q
    |||||| |||| |||||||||||||||||||||  |||||||| ||| || || |||||||||||| ||||    
T  19280145 ctaaaatattttagttaaccaaatatatggtctgagtgaccacattttttcagatgcgtgaccactgttta 19280215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 337
Target Start/End: Original strand, 34627318 - 34627396
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 337  Q
    |||||||||||||||||| |||||||||| |||| ||  | |||||||||| | |||||||||||| | | ||||||||    
T  34627318 atttatttggttaactaaatggaaaaataatggttacatgtattttagttgcgtgaccacatttttccgggttttaaat 34627396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 263
Target Start/End: Complemental strand, 42638114 - 42638048
Alignment:
Q  197 aaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 263  Q
    ||||||||||||||| ||||||||||| |   ||||||| ||| || ||||||||||||||||||||    
T  42638114 aaaatttcagttaactaaatatatggtatatatgaccacattttttcagttgcgtgaccactattta 42638048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 337
Target Start/End: Complemental strand, 11509969 - 11509916
Alignment:
Q  283 aaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 337  Q
    |||||| |||||||||||||||||||| | |||||||| |||||||||| |||||    
T  11509969 aaataggggtcacgcgcattttagttgcgtgaccacat-ttttcagcttctaaat 11509916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 27079453 - 27079388
Alignment:
Q  197 aaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt 262  Q
    |||||||| ||||||||||||||||||||  ||||||||  || || |||||| ||||||| ||||    
T  27079453 aaaatttcggttaaccaaatatatggtctgtgtgaccacaatttttcagttgcatgaccacaattt 27079388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 27085250 - 27085185
Alignment:
Q  197 aaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt 262  Q
    |||||||| ||||||||||||||||||||  ||||||||  || || |||||| ||||||| ||||    
T  27085250 aaaatttcggttaaccaaatatatggtctgtgtgaccacaatttttcagttgcatgaccacaattt 27085185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 206 - 356
Target Start/End: Complemental strand, 6000 - 5851
Alignment:
Q  206 gttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactatttatttggttaactaagtggaaaaatagtggtcacgcgcatttta 305  Q
    ||||| ||||||||||||    |||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||    
T  6000 gttaatcaaatatatggtgcgtgtgaccacatttatttagttgcgtgaccactatttatttggttaattaagtgcaaaaatagtggtcacgcgtatttta 5901  T
Q  306 gttgtgcgaccacattttttcagcttttaaatgctagaaaaatagtggtca 356  Q
    |||| |  ||||||  |||||||||||||||||||| ||||||||||||||    
T  5900 gttgcgacaccaca-cttttcagcttttaaatgctaaaaaaatagtggtca 5851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 172 - 356
Target Start/End: Complemental strand, 24669361 - 24669178
Alignment:
Q  172 tgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactatttatttggtta 271  Q
    |||||| || |||||| || ||| |||||||| |||||| ||||||||||||||  |||||||| ||| || ||||||||||||||||||||||||||||    
T  24669361 tgtacacccctttgtaccactctgaaaaatttaagttaatcaaatatatggtctgtgtgaccacattttttcagttgcgtgaccactatttatttggtta 24669262  T
Q  272 actaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaatgctagaaaaatagtggtca 356  Q
    |||||||| ||||||||||||||| || |||||||||| | ||||| | ||||| || || ||||||||  ||||||||||||||    
T  24669261 actaagtgaaaaaatagtggtcacacgaattttagttgcgtgaccata-tttttgagtttctaaatgctgaaaaaatagtggtca 24669178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 197 - 337
Target Start/End: Original strand, 1966780 - 1966928
Alignment:
Q  197 aaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccacta-----------tttatttggttaactaagtggaaaaa 285  Q
    |||||||||||||||||||||||||||||  |||||||| ||| |||||||||||||||||||           ||||||||||||| ||||||||||||    
T  1966780 aaaatttcagttaaccaaatatatggtctgtgtgaccacattt-tttagttgcgtgaccactagttttccagaatttatttggttaattaagtggaaaaa 1966878  T
Q  286 tagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 337  Q
    ||||||||||||||| |||||||| | ||||||| ||||||||||| |||||    
T  1966879 tagtggtcacgcgca-tttagttgcgtgaccaca-tttttcagcttctaaat 1966928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 180 - 338
Target Start/End: Complemental strand, 42908747 - 42908579
Alignment:
Q  180 catttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt-----------atttgg 268  Q
    |||||||| || ||| |||||||| ||||||||||||||||||| |  |||||||| ||| |||||||| || ||||||||||           ||||||    
T  42908747 catttgtaccactctgaaaaatttaagttaaccaaatatatggtatgtgtgaccacattt-tttagttgagtcaccactatttttccagaatttatttgg 42908649  T
Q  269 ttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaatg 338  Q
    ||||||||| ||||| ||||||||||||||||||||||||| | || |||||||||||| ||||||||||    
T  42908648 ttaactaagaggaaacatagtggtcacgcgcattttagttgcgtgatcacattttttcaacttttaaatg 42908579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 259 - 324
Target Start/End: Original strand, 33179778 - 33179843
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttt 324  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||    
T  33179778 atttatttgattaactaagtggaaaaatagtggtcacacgcattttagttgtgtggccacattttt 33179843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 166 - 324
Target Start/End: Original strand, 17633257 - 17633425
Alignment:
Q  166 ttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt--- 262  Q
    ||||| ||||||  |||||||| || ||  |||||||| |||||||||||||||||||||  |||||||| ||| ||||| ||| ||||||| ||||       
T  17633257 ttaatgtgtacactcatttgtaccactccgaaaaattttagttaaccaaatatatggtctgtgtgaccacattt-tttagatgcatgaccacaatttgtc 17633355  T
Q  263 --------atttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttt 324  Q
            ||||||||||||||||  ||||||||||||||||||||||||||||| | ||||| ||||||    
T  17633356 caaaatttatttggttaactaagttaaaaaatagtggtcacgcgcattttagttgcgtgaccatattttt 17633425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 259 - 309
Target Start/End: Complemental strand, 16583686 - 16583636
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttg 309  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16583686 atttatttggttaattaagtggaaaaatagtggtcacgcgcattttagttg 16583636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 165 - 337
Target Start/End: Complemental strand, 19596978 - 19596795
Alignment:
Q  165 cttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttattt-agttgcgtgaccactat--- 260  Q
    |||||| ||||||||| |||||| | || |  |||||||||||||||||||||||||||    |||||||| ||| ||| || ||||||||||||||       
T  19596978 cttaatgtgtacatccttttgtacccttttggaaaatttcagttaaccaaatatatggtacgtgtgaccacattttttttagctgcgtgaccactatgtt 19596879  T
Q  261 --------ttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 337  Q
            ||||||||||||||||||||  ||||||| |||| |||||||||||||| | |||||||| |||||||||| |||||    
T  19596878 ttcagaatttatttggttaactaagtgggtaaatagtagtcatgcgcattttagttgcgtgaccacat-ttttcagcttctaaat 19596795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 173 - 262
Target Start/End: Original strand, 24669099 - 24669189
Alignment:
Q  173 gtacatccatttgtatcattctaaaaaatttcagttaaccaaata-tatggtctccgtgaccacgtttatttagttgcgtgaccactattt 262  Q
    ||||||||||||||||||||||| ||||||| ||||| ||||||| |||||| |  |||||||| ||| || |||||||||||||||||||    
T  24669099 gtacatccatttgtatcattctagaaaatttaagttagccaaatattatggtatgtgtgaccacattttttcagttgcgtgaccactattt 24669189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 261 - 337
Target Start/End: Complemental strand, 9809162 - 9809087
Alignment:
Q  261 ttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 337  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||| | ||| ||| ||||||||||| |||||    
T  9809162 ttatttggttaactaaatggaaaaatagtggtcacgcgcatttgagttgcgtgactaca-tttttcagcttctaaat 9809087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 165 - 257
Target Start/End: Complemental strand, 17633531 - 17633439
Alignment:
Q  165 cttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccac 257  Q
    |||||| |||||| || |||||| || | | ||||||||||||||||||||||||||||||  |||||||| ||| || ||||||||||||||    
T  17633531 cttaatatgtacacccctttgtaccactttgaaaaatttcagttaaccaaatatatggtctgtgtgaccacattttttcagttgcgtgaccac 17633439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 196 - 263
Target Start/End: Original strand, 9809024 - 9809091
Alignment:
Q  196 aaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 263  Q
    ||||| |||||||||| ||||||||||||| ||||||||| ||| || ||||||||||||||||||||    
T  9809024 aaaaaattcagttaactaaatatatggtctgcgtgaccacattttttcagttgcgtgaccactattta 9809091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 173 - 263
Target Start/End: Original strand, 16583523 - 16583613
Alignment:
Q  173 gtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 263  Q
    |||||||| |||||| || |||  |||||||||||||||||||||||||||    |||||||| ||| || ||||||||||||||||||||    
T  16583523 gtacatccctttgtaccactctcgaaaatttcagttaaccaaatatatggttgatgtgaccacattttttcagttgcgtgaccactattta 16583613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 259 - 307
Target Start/End: Original strand, 8740810 - 8740858
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagt 307  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  8740810 atttatttagttaactaagtagaaaaatagtggtcacgcgcattttagt 8740858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 182 - 309
Target Start/End: Complemental strand, 14351240 - 14351102
Alignment:
Q  182 tttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt-----------atttggtt 270  Q
    |||||| || ||| ||||| || ||||||||||||||||||| |  |||||||  ||| | ||||||||||||||||||||           ||||||||    
T  14351240 tttgtaccactctcaaaaaatttagttaaccaaatatatggtttgtgtgaccatatttttctagttgcgtgaccactattttgacaaaatttatttggtt 14351141  T
Q  271 aactaagtggaaaaatagtggtcacgcgcattttagttg 309  Q
    |||||||||||||||||||||||| |  |||||||||||    
T  14351140 aactaagtggaaaaatagtggtcatggacattttagttg 14351102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 165 - 263
Target Start/End: Original strand, 9810679 - 9810777
Alignment:
Q  165 cttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 263  Q
    |||||| |||||| || |||||| || | | |||||||||||||||  ||||||||||| | ||| ||||| ||| || ||||||||||||||||||||    
T  9810679 cttaatatgtacacccttttgtaccactatgaaaaatttcagttaattaaatatatggtttgcgttaccacattttttcagttgcgtgaccactattta 9810777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 259 - 324
Target Start/End: Original strand, 33249635 - 33249700
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttt 324  Q
    ||||||||| ||||||| ||||||||||||||||||| |||||||||  || | ||||||||||||    
T  33249635 atttatttgattaactaggtggaaaaatagtggtcacacgcattttatgtgcgtgaccacattttt 33249700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 259 - 308
Target Start/End: Original strand, 55666845 - 55666894
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagtt 308  Q
    ||||||||| ||||||||||||||||||||||||||||  ||||||||||    
T  55666845 atttatttgcttaactaagtggaaaaatagtggtcacgaacattttagtt 55666894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 261 - 325
Target Start/End: Complemental strand, 9810848 - 9810784
Alignment:
Q  261 ttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacatttttt 325  Q
    |||||||||||||||| ||||||||||| |||||||| ||||| ||||| | ||| |||||||||    
T  9810848 ttatttggttaactaaatggaaaaatagaggtcacgcacatttgagttgcgtgactacatttttt 9810784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 197 - 264
Target Start/End: Complemental strand, 55666982 - 55666916
Alignment:
Q  197 aaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactatttat 264  Q
    ||||||||||||||| |||||||||||||  |||||||| ||| || ||||||||||||| |||||||    
T  55666982 aaaatttcagttaactaaatatatggtctgtgtgaccacattt-ttcagttgcgtgaccattatttat 55666916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 337
Target Start/End: Original strand, 35544439 - 35544515
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 337  Q
    |||||||| ||||| ||||||||||||||||| |||| |||| |||||||| | ||||||| ||||||||||| |||||    
T  35544439 atttatttagttaattaagtggaaaaatagtgatcacacgca-tttagttgcgtgaccaca-tttttcagcttctaaat 35544515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 2433801 - 2433756
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcatttt 304  Q
    ||||||||||||||| ||||| |||||||||||||||| |||||||    
T  2433801 atttatttggttaacaaagtgaaaaaatagtggtcacgtgcatttt 2433756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 164 - 256
Target Start/End: Complemental strand, 9810959 - 9810866
Alignment:
Q  164 tcttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccac-gtttatttagttgcgtgacca 256  Q
    ||||||| |||| | | ||||||| || |||| ||| ||| |||||||||||||||||||||  ||||||||  ||| ||||||||||||||||    
T  9810959 tcttaatgtgtaaacctatttgtaccactctagaaattttaagttaaccaaatatatggtctgtgtgaccacattttttttagttgcgtgacca 9810866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 225
Target Start/End: Complemental strand, 19747011 - 19746952
Alignment:
Q  166 ttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtct 225  Q
    ||||| |||||| || |||||||||||||  ||||||||||||||| ||||| |||||||    
T  19747011 ttaatgtgtacacccctttgtatcattctcgaaaatttcagttaactaaatacatggtct 19746952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 19792795 - 19792854
Alignment:
Q  166 ttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtct 225  Q
    ||||| |||||| || |||||||||||||  ||||||||||||||| ||||| |||||||    
T  19792795 ttaatgtgtacacccctttgtatcattctcgaaaatttcagttaactaaatacatggtct 19792854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 25007675 - 25007632
Alignment:
Q  182 tttgtatcattctaaaaaatttcagttaaccaaatatatggtct 225  Q
    |||||| ||||||  |||||||||||||||||||||||||||||    
T  25007675 tttgtaccattctcgaaaatttcagttaaccaaatatatggtct 25007632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 235
Target Start/End: Original strand, 19596689 - 19596769
Alignment:
Q  156 gatagacatctt-aatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccac 235  Q
    |||||||||||| ||| |||||| || |||||| || ||| |||||| || ||| |||||||||||||||  |||||||||    
T  19596689 gatagacatctttaatgtgtacacccctttgtaccactctgaaaaatctctgttgaccaaatatatggtcagcgtgaccac 19596769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 4e-39; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 182 - 356
Target Start/End: Complemental strand, 32964929 - 32964757
Alignment:
Q  182 tttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactatttatttggttaactaagtgga 281  Q
    ||||||||| |||||||||||| ||||||| | |||||||||||  |||||||| | | ||||||||||||||||||||||||| |||||| ||||||||    
T  32964929 tttgtatcactctaaaaaatttaagttaactatatatatggtctgtgtgaccacatatttttagttgcgtgaccactatttattaggttaattaagtgga 32964830  T
Q  282 aaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaatgctagaaaaatagtggtca 356  Q
    ||||||||||||||| |||||||||||    ||||| | ||||||||||| |||||||| | |||||||||||||    
T  32964829 aaaatagtggtcacgtgcattttagttacatgaccata-tttttcagcttctaaatgct-ggaaaatagtggtca 32964757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 149 - 337
Target Start/End: Original strand, 28804884 - 28805085
Alignment:
Q  149 aatgatagatagacatc-ttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttattt---a 244  Q
    |||||||| |||||| | ||||| |||||| || |||||| ||||||| |||||||||||||||||||||||||||||  |||||||| ||| |||   |    
T  28804884 aatgataggtagacacccttaatatgtacacccttttgtaccattctagaaaatttcagttaaccaaatatatggtctatgtgaccacatttttttttta 28804983  T
Q  245 gttgcgtgaccactat-----------ttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagctttt 333  Q
    |||| |||||||||||           ||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||| ||||||||||| |    
T  28804984 gttgtgtgaccactatatttccataatttatttggttaactaagtggaaaaatagtggtc-cgcgcattttggttgtgtgaccaca-tttttcagcttct 28805081  T
Q  334 aaat 337  Q
    ||||    
T  28805082 aaat 28805085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 165 - 337
Target Start/End: Complemental strand, 21589818 - 21589636
Alignment:
Q  165 cttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactat---- 260  Q
    |||||| ||||||||| ||| || || |||||||||||||||||| |||||||||||||||  |||||||| ||| ||||||||| ||||||||||        
T  21589818 cttaatgtgtacatccgtttataccactctaaaaaatttcagttatccaaatatatggtctgtgtgaccacatttttttagttgcatgaccactattttt 21589719  T
Q  261 -------ttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 337  Q
           ||||||| |||| |||||||||||||||||||||| |||||||||||||   ||||||| ||||||||||| |||||    
T  21589718 ccagaacttatttgattaattaagtggaaaaatagtggtcacacgcattttagttgcatgaccaca-tttttcagcttctaaat 21589636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 183 - 337
Target Start/End: Complemental strand, 21548629 - 21548465
Alignment:
Q  183 ttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccact-----------atttatttggtta 271  Q
    ||||| ||||||||||||||||||||||| |||||||||||||  |||| ||  ||| ||||||||||||||||||           |||||||||||||    
T  21548629 ttgtaccattctaaaaaatttcagttaactaaatatatggtctgtgtgatcatatttgtttagttgcgtgaccactatttttccagaatttatttggtta 21548530  T
Q  272 actaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 337  Q
    |||||||||||||| |||||| |||||||||  ||||| | ||||||| |||||||||||||||||    
T  21548529 actaagtggaaaaacagtggttacgcgcattcgagttgcgtgaccaca-tttttcagcttttaaat 21548465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 174 - 337
Target Start/End: Complemental strand, 31303638 - 31303466
Alignment:
Q  174 tacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactat-----------tt 262  Q
    ||||||| ||| || || || ||||||||||||||||| ||||||||||| |  |||||||| ||| ||||||||||||||||||||           ||    
T  31303638 tacatccttttataccactcaaaaaaatttcagttaacaaaatatatggtatgtgtgaccacattt-tttagttgcgtgaccactatgtttccagaattt 31303540  T
Q  263 atttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 337  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||   |||||||| |||||||||| |||||    
T  31303539 atttggttaactaagtggaaaaatagtggtcacgcacattttagttgcatgaccacat-ttttcagcttctaaat 31303466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 165 - 263
Target Start/End: Original strand, 31303372 - 31303470
Alignment:
Q  165 cttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 263  Q
    |||||| ||||||||||||||||||| ||| |||||||||||| ||||||||| ||||||| ||||||||| ||| || | ||||||||||||||||||    
T  31303372 cttaatgtgtacatccatttgtatcactctgaaaaatttcagtcaaccaaatacatggtctgcgtgaccacattttttcaattgcgtgaccactattta 31303470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 241 - 356
Target Start/End: Original strand, 46943743 - 46943858
Alignment:
Q  241 tttagttgcgtgaccactatttatttggttaactaagtg--gaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaatg 338  Q
    ||||||||| |||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||| | || ||||  |||||||||| |||||     
T  46943743 tttagttgcatgaccactatttatttggttaactaagtgaaaaaaaatagtggtcacgcgcattttagttgcgtgatcaca--ttttcagcttctaaatt 46943840  T
Q  339 ctagaaaaatagtggtca 356  Q
    || ||| || ||||||||    
T  46943841 cttgaacaacagtggtca 46943858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 196 - 324
Target Start/End: Complemental strand, 4290990 - 4290852
Alignment:
Q  196 aaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccacta-----------tttatttggttaactaagtggaaaa 284  Q
    |||||||||||||||||||||| ||| |||   ||||||||||| |||||||||||||||||||           |||||||||||||||||||||||||    
T  4290990 aaaaatttcagttaaccaaataaatgatctgtatgaccacgtttttttagttgcgtgaccactagtttttcagaatttatttggttaactaagtggaaaa 4290891  T
Q  285 atagtggtcacgcgcattttagttgtgcgaccacattttt 324  Q
    ||||||||||||| ||  ||||||| | ||||||||||||    
T  4290890 atagtggtcacgcaca-cttagttgcgtgaccacattttt 4290852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 259 - 337
Target Start/End: Complemental strand, 20556856 - 20556779
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 337  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||    
T  20556856 atttatttggttaactaagtggaaaaatattggtcacgcgtattttagttgcgtgaccacat-ttttcagcttctaaat 20556779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 164 - 262
Target Start/End: Complemental strand, 22033255 - 22033158
Alignment:
Q  164 tcttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt 262  Q
    ||||||| ||||||||| |||||| |||||| |||||||| |||||||||||||||||||||  |||||||  ||| || |||||||||||||||||||    
T  22033255 tcttaatgtgtacatcc-tttgtaccattctgaaaaattttagttaaccaaatatatggtctgtgtgaccatattttttgagttgcgtgaccactattt 22033158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 149 - 262
Target Start/End: Original strand, 5083690 - 5083803
Alignment:
Q  149 aatgatagatagacatc-ttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagtt 247  Q
    |||||||| |||||||| ||||||| || | || ||| ||||| | | ||||||||||||||| ||||||||||||||  |||||||| ||| |||||||    
T  5083690 aatgataggtagacatccttaatctatatacccctttatatcactttgaaaaatttcagttaatcaaatatatggtctttgtgaccacattt-tttagtt 5083788  T
Q  248 gcgtgaccactattt 262  Q
     ||||||||||||||    
T  5083789 acgtgaccactattt 5083803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 182 - 323
Target Start/End: Complemental strand, 18313004 - 18312852
Alignment:
Q  182 tttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt-----------atttggtt 270  Q
    |||||| || ||| ||||||||||| |||||||||||||||| |  ||| | |  ||| ||||||||||||||||||||||           ||| ||||    
T  18313004 tttgtaccactctgaaaaatttcagctaaccaaatatatggtttgtgtggctaaatttttttagttgcgtgaccactatttttcaagaatttattaggtt 18312905  T
Q  271 aactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacatttt 323  Q
    |||||||||||||||||||||||||  |||||||||||| | || ||||||||    
T  18312904 aactaagtggaaaaatagtggtcacatgcattttagttgcgtgagcacatttt 18312852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 259 - 337
Target Start/End: Original strand, 22740678 - 22740755
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 337  Q
    ||||||||||||||||||||||||||||| || ||||||  |||||||||| | ||||| | |||||||||||||||||    
T  22740678 atttatttggttaactaagtggaaaaataatgatcacgcatattttagttgcgtgaccata-tttttcagcttttaaat 22740755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 196 - 262
Target Start/End: Original strand, 15958258 - 15958324
Alignment:
Q  196 aaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt 262  Q
    |||||||| ||||||||||||||||||||   |||||||| ||| |||||||| |||||||||||||    
T  15958258 aaaaatttaagttaaccaaatatatggtcagtgtgaccacatttttttagttgtgtgaccactattt 15958324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 262
Target Start/End: Complemental strand, 28805213 - 28805116
Alignment:
Q  165 cttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt 262  Q
    |||||| |||| | || ||||||||| ||| |||||||| ||||||||||||||||||| |  |||||||| ||| || |||||||||| ||| ||||    
T  28805213 cttaatgtgtatacccctttgtatcactctgaaaaatttaagttaaccaaatatatggtatgtgtgaccacattttttcagttgcgtgatcacgattt 28805116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 305
Target Start/End: Complemental strand, 5174956 - 5174910
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcatttta 305  Q
    ||||||||| ||||||||||| ||||||||||||||||| |||||||    
T  5174956 atttatttgattaactaagtgtaaaaatagtggtcacgcacatttta 5174910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 263
Target Start/End: Original strand, 20556717 - 20556783
Alignment:
Q  197 aaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 263  Q
    ||||||||||||||||||||||||||||   |||||||  ||| || ||||| ||||||||||||||    
T  20556717 aaaatttcagttaaccaaatatatggtcggtgtgaccatattttttcagttgtgtgaccactattta 20556783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 310
Target Start/End: Original strand, 27523506 - 27523557
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgt 310  Q
    |||||||||||||| |||||||||||||||| |||| || ||||||| ||||    
T  27523506 atttatttggttaattaagtggaaaaatagtagtcaagcacattttaattgt 27523557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 263
Target Start/End: Original strand, 18312778 - 18312844
Alignment:
Q  197 aaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 263  Q
    ||||||||| |||| ||||||||||||||| |||||||| | | || |||||||| || ||||||||    
T  18312778 aaaatttcaattaatcaaatatatggtctctgtgaccacatattttcagttgcgtcactactattta 18312844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 324
Target Start/End: Original strand, 5083811 - 5083875
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttt 324  Q
    |||||||| |||||| |||| |||||||||||||||| |||| |||||||| | ||||| ||||||    
T  5083811 atttatttcgttaacaaagttgaaaaatagtggtcacccgca-tttagttgcgtgaccatattttt 5083875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 263
Target Start/End: Complemental strand, 5083964 - 5083883
Alignment:
Q  182 tttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 263  Q
    ||||||| |||||  ||||||||| || | |||||||||||| |  |||||||| ||| || | ||||||||||||||||||    
T  5083964 tttgtattattctcgaaaatttcaattcatcaaatatatggtatgtgtgaccacattttttcaattgcgtgaccactattta 5083883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 20556947 - 20556867
Alignment:
Q  182 tttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt 262  Q
    ||||||||| | | |||| ||||||||||| |||||||| ||||   ||||||| ||| ||| |||| |||||||||||||    
T  20556947 tttgtatcactttgaaaattttcagttaactaaatatatagtctgtttgaccacatttttttggttgagtgaccactattt 20556867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 244
Target Start/End: Original strand, 22740058 - 22740154
Alignment:
Q  149 aatgatagatagaca-tcttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttattta 244  Q
    |||||||||| |||| ||||||| |||||| |  | ||||||| ||| ||| |||| |||||| ||||||||||||||  |||||||| ||| ||||    
T  22740058 aatgatagattgacactcttaatgtgtacacctctatgtatcactctgaaatatttaagttaatcaaatatatggtctgtgtgaccacattttttta 22740154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 3e-37; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 182 - 356
Target Start/End: Complemental strand, 5855282 - 5855111
Alignment:
Q  182 tttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactatttatttggttaactaagtgga 281  Q
    |||||| || ||| |||||||| ||||||||||||||||||| |  |||||||| |||| ||||||||||||||||||||||||||||||| ||| ||||    
T  5855282 tttgtaccactctgaaaaatttaagttaaccaaatatatggtatgtgtgaccacatttagttagttgcgtgaccactatttatttggttaattaaatgga 5855183  T
Q  282 aaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaatgctagaaaaatagtggtca 356  Q
    |||||||  ||||  || |||||||||||| |||||||| |||| |||||||||||| | ||||||| |||||||    
T  5855182 aaaatagacgtca--cgtattttagttgtgtgaccacatatttt-agcttttaaatgttggaaaaattgtggtca 5855111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 144 - 337
Target Start/End: Original strand, 29676978 - 29677181
Alignment:
Q  144 agagaaatgatagatagacatctt-aatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatt 242  Q
    |||| |||||||| |||||| ||| ||| ||||| ||| |||||| || | | |||||||| |||||||||||||||||| ||  |||||||| ||| ||    
T  29676978 agagcaatgatagttagacacctttaatgtgtacgtccctttgtagcactttgaaaaattttagttaaccaaatatatggcctgtgtgaccacattt-tt 29677076  T
Q  243 tagttgcgtgaccactattt-----------atttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagctt 331  Q
    ||||||| ||||||||||||           ||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| |||||||||||    
T  29677077 tagttgcatgaccactattttttcagaatttatttggttaactaagtggaaaaatagtggtcacgcacattttagttgcgtgaccaca-tttttcagctt 29677175  T
Q  332 ttaaat 337  Q
     |||||    
T  29677176 ctaaat 29677181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 196 - 352
Target Start/End: Complemental strand, 2996165 - 2996010
Alignment:
Q  196 aaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactatttatttggttaactaagtggaaaaatagtggtcac 295  Q
    |||||||| | ||||| |||||||| || |  |||||||| ||| |||||||| ||| ||||| |||||||||||||||||| |||||||||| || |||    
T  2996165 aaaaatttaaattaactaaatatatagtatgtgtgaccacatttttttagttgtgtggccactgtttatttggttaactaagcggaaaaatagcggccac 2996066  T
Q  296 gcgcattttagttgtgcgaccacattttttcagcttttaaatgctagaaaaatagtg 352  Q
    |||||||||| ||| | |||||||| |||||||||| ||||| ||  ||||||||||    
T  2996065 gcgcattttatttgcgtgaccacat-ttttcagcttctaaattctgaaaaaatagtg 2996010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 172 - 325
Target Start/End: Complemental strand, 5831720 - 5831556
Alignment:
Q  172 tgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccact-----------at 260  Q
    |||||| || ||||||||| ||| |||||||||| |||||||||||||||||||  |||||||  ||| ||||||||||||||||||           ||    
T  5831720 tgtacacccctttgtatcactctgaaaaatttcaattaaccaaatatatggtctgtgtgaccatatttttttagttgcgtgaccactaattttccagaat 5831621  T
Q  261 ttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacatttttt 325  Q
    |||||||||||||||||||||||||| ||||| |  ||||||||||||  | ||||| |||||||    
T  5831620 ttatttggttaactaagtggaaaaattgtggtaatacgcattttagttacgggaccatatttttt 5831556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 150 - 305
Target Start/End: Complemental strand, 34490399 - 34490231
Alignment:
Q  150 atgatagatagaca-tcttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttg 248  Q
    ||||||| |||||| ||||||| |||||| |  |||||| || ||| ||||||||||||| || |||||||||||||  |||||||| ||| ||||||||    
T  34490399 atgataggtagacactcttaatgtgtacaccactttgtaccactctgaaaaatttcagtttacaaaatatatggtctgtgtgaccacatttttttagttg 34490300  T
Q  249 cgtgaccact------------atttatttggttaactaagtggaaaaatagtggtcacgcgcatttta 305  Q
    ||||||||||            |||||||||||||||||| | ||||||||||||||| ||||||||||    
T  34490299 cgtgaccactagttttttcagaatttatttggttaactaactagaaaaatagtggtcatgcgcatttta 34490231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 259 - 310
Target Start/End: Complemental strand, 42604308 - 42604257
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgt 310  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42604308 atttatttcgttaactaagtggaaaaatagtggtcacgcgcattttagttgt 42604257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 196 - 305
Target Start/End: Original strand, 29167756 - 29167875
Alignment:
Q  196 aaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccacta-----------tttatttggttaactaagtggaaaa 284  Q
    |||||||||||||||| ||||||||||| |  |||||||| ||| ||||||||| |||||||||           |||||||||||||||||||||||||    
T  29167756 aaaaatttcagttaactaaatatatggtttgtgtgaccacattt-tttagttgcctgaccactagtttttcggaatttatttggttaactaagtggaaaa 29167854  T
Q  285 atagtggtcacgcgcatttta 305  Q
    |||||||||| ||||||||||    
T  29167855 atagtggtcatgcgcatttta 29167875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 144 - 224
Target Start/End: Complemental strand, 28499742 - 28499662
Alignment:
Q  144 agagaaatgatagatagacatcttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtc 224  Q
    |||| ||||||||| |||||  ||||  ||||||||  |||||| ||||||||||||||||||||||||||||||||||||    
T  28499742 agagtaatgatagacagacactttaacgtgtacatcattttgtaccattctaaaaaatttcagttaaccaaatatatggtc 28499662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 182 - 309
Target Start/End: Complemental strand, 38952085 - 38951947
Alignment:
Q  182 tttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt-----------atttggtt 270  Q
    ||||||||| ||| |||||||||||||||| |||| |||||| |  |||||||  ||| ||||||||| ||||||||||||           ||||||||    
T  38952085 tttgtatcactctgaaaaatttcagttaacaaaatgtatggtatatgtgaccatatttttttagttgcttgaccactatttctccaaaatttatttggtt 38951986  T
Q  271 aactaagtggaaaaatagtggtcacgcgcattttagttg 309  Q
    |||||||| |||||||||||||||  |||||||||||||    
T  38951985 aactaagtagaaaaatagtggtcagacgcattttagttg 38951947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 199 - 337
Target Start/End: Complemental strand, 9468261 - 9468121
Alignment:
Q  199 aatttcagttaaccaaatatatggtctccgtgaccacgtttattt-agttgcgtgaccactat--ttatttggttaactaagtgg-aaaaatagtggtca 294  Q
    ||||| ||||||||||||||||||| || |||||||  ||| ||| |||||||||| || |||  |||||||||||||||||||| ||||||||| ||||    
T  9468261 aatttaagttaaccaaatatatggt-tctgtgaccatattttttttagttgcgtgatcattatatttatttggttaactaagtggcaaaaatagtagtca 9468163  T
Q  295 cgcgcattttagttgtgcgaccacattttttcagcttttaaat 337  Q
    |   ||||||||||||| || |||| |||| ||||||||||||    
T  9468162 catacattttagttgtgtgatcaca-ttttacagcttttaaat 9468121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 183 - 305
Target Start/End: Complemental strand, 25238653 - 25238520
Alignment:
Q  183 ttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccacta-----------tttatttggtta 271  Q
    ||||| || ||| ||||||||||||||| |||||||||||| || |||||||| ||| |||||||  ||||| ||||           ||||||||||||    
T  25238653 ttgtaccactctgaaaaatttcagttaatcaaatatatggtttctgtgaccacatttttttagttatgtgactactagtttttcagaatttatttggtta 25238554  T
Q  272 actaagtggaaaaatagtggtcacgcgcatttta 305  Q
    ||||||||||||||||||||| |||| |||||||    
T  25238553 actaagtggaaaaatagtggttacgcacatttta 25238520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 259 - 297
Target Start/End: Complemental strand, 2569998 - 2569960
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgc 297  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2569998 atttatttggttaactaagtggaaaaatagtggtcacgc 2569960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 259 - 337
Target Start/End: Complemental strand, 34364321 - 34364244
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 337  Q
    |||| |||||||||||||||| |||||| |||||||||  ||||||||||||| ||||||| | ||||||||| |||||    
T  34364321 atttttttggttaactaagtgaaaaaattgtggtcacgttcattttagttgtgtgaccaca-tgtttcagcttctaaat 34364244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 9929950 - 9929870
Alignment:
Q  182 tttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt 262  Q
    |||||| |||| | |||||||||| ||||| |||||||||||||  |||||||| ||| || | |||||||||||||||||    
T  9929950 tttgtaccattttgaaaaatttcaattaactaaatatatggtctgtgtgaccacattttttcatttgcgtgaccactattt 9929870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 149 - 235
Target Start/End: Complemental strand, 13351097 - 13351010
Alignment:
Q  149 aatgatagatagacatctt-aatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccac 235  Q
    |||||||| |||||||||| ||| |||||| || |||||| || ||| |||||||| | |||||||||||||||||||  ||||||||    
T  13351097 aatgatagctagacatctttaatgtgtacacccctttgtaccactctgaaaaatttaacttaaccaaatatatggtctttgtgaccac 13351010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 193 - 260
Target Start/End: Complemental strand, 38244868 - 38244801
Alignment:
Q  193 ctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactat 260  Q
    |||| |||||| ||||| |||||||||||||||  |||||||| ||| || |||||||||||||||||    
T  38244868 ctaagaaatttaagttagccaaatatatggtctgtgtgaccacattttttcagttgcgtgaccactat 38244801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 262
Target Start/End: Original strand, 13350889 - 13350999
Alignment:
Q  153 atagatagacatc-ttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgt 251  Q
    |||| |||||||| ||||| |||||| || |||||| || |||  ||||||||||||||||||||||||||| |  |||| ||||||| || |||||| |    
T  13350889 ataggtagacatccttaatgtgtacacccttttgtaccactctcgaaaatttcagttaaccaaatatatggtatgtgtgatcacgttttttcagttgcat 13350988  T
Q  252 gaccactattt 262  Q
    | | |||||||    
T  13350989 ggctactattt 13350999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 42604128 - 42604186
Alignment:
Q  165 cttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggt 223  Q
    |||||| |||||| ||||||||| |||| |||||||||||| |||||||||| ||||||    
T  42604128 cttaatgtgtacacccatttgtaccattttaaaaaatttcaattaaccaaatgtatggt 42604186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 262
Target Start/End: Original strand, 2569900 - 2569974
Alignment:
Q  190 attctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttattt--agttgcgtgaccactattt 262  Q
    |||||||||| |||| ||||||||||||||||||||  ||||| || ||| |||  | |||||||||||||||||    
T  2569900 attctaaaaattttcggttaaccaaatatatggtctgtgtgactacattttttttcaattgcgtgaccactattt 2569974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 262
Target Start/End: Original strand, 5855056 - 5855122
Alignment:
Q  196 aaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt 262  Q
    ||||||||||| ||||||||||||||||||  |||||||| | | || ||||| |||||||| ||||    
T  5855056 aaaaatttcagctaaccaaatatatggtctgtgtgaccacatattttcagttgtgtgaccacaattt 5855122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 517586 - 517546
Alignment:
Q  181 atttgtatcattctaaaaaatttcagttaaccaaatatatg 221  Q
    |||||||||| ||| |||||||| |||||||||||||||||    
T  517586 atttgtatcactctcaaaaatttaagttaaccaaatatatg 517546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 225
Target Start/End: Complemental strand, 29168579 - 29168551
Alignment:
Q  197 aaaatttcagttaaccaaatatatggtct 225  Q
    |||||||||||||||||||||||||||||    
T  29168579 aaaatttcagttaaccaaatatatggtct 29168551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 182 - 356
Target Start/End: Complemental strand, 15233395 - 15233222
Alignment:
Q  182 tttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactatttatttggttaactaagtgga 281  Q
    |||||| || ||| |||||||| ||||||  |||||||| || |  |||||||| ||||| ||| ||| |||||||||||||||||||||| |||||| |    
T  15233395 tttgtaccactctgaaaaattttagttaattaaatatatagtttgtgtgaccacatttatctaggtgcttgaccactatttatttggttaattaagtgaa 15233296  T
Q  282 aaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaatgctagaaaaatagtggtca 356  Q
    ||||||||||||| |||||||||||||| | ||||||  ||||||| |||||||||||| |||||||||||||||    
T  15233295 aaaatagtggtcatgcgcattttagttgcgtgaccac-gtttttcaacttttaaatgctggaaaaatagtggtca 15233222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 149 - 337
Target Start/End: Original strand, 38606725 - 38606924
Alignment:
Q  149 aatgatagatagacatc-ttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagtt 247  Q
    |||||||| |||||||| ||||||| || | || |||||| || ||| |||||||||||||||| ||||||||||| |  |||||||  ||| ||||| |    
T  38606725 aatgataggtagacatccttaatctttagacccctttgtaccactctgaaaaatttcagttaactaaatatatggtatgtgtgaccatatttttttagct 38606824  T
Q  248 gcgtgaccactat-----------ttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaa 336  Q
    |||||||||||||           ||||||||||||||||||||||||||||||||||| |||||||| |||| | ||||||| ||||||||||| ||||    
T  38606825 gcgtgaccactatgtttccagaatttatttggttaactaagtggaaaaatagtggtcacacgcattttcgttgcgtgaccaca-tttttcagcttctaaa 38606923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 192 - 350
Target Start/End: Complemental strand, 28700307 - 28700149
Alignment:
Q  192 tctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactatttatttggttaactaagtggaaaaatagtgg 291  Q
    |||| ||||| | ||||||||||||||||| ||    ||||||| |||  ||||||||||||| | ||||||||||||||||||||| |||||||| |||    
T  28700307 tctagaaaatctaagttaaccaaatatatgttcagtatgaccacattttgttagttgcgtgacaattatttatttggttaactaagtagaaaaataatgg 28700208  T
Q  292 tcacgcgcattttagttgtgcgaccacattttttcagcttttaaatgctagaaaaatag 350  Q
    ||||  |||||||| ||||| || | |||||||| || |||||||| || |||||||||    
T  28700207 tcacttgcattttaattgtgtgatcgcatttttttagtttttaaattctggaaaaatag 28700149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 261 - 324
Target Start/End: Original strand, 29367076 - 29367139
Alignment:
Q  261 ttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttt 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  29367076 ttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgcgtgaccacattttt 29367139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 144 - 308
Target Start/End: Complemental strand, 5573997 - 5573821
Alignment:
Q  144 agagaaatgatagatagacatctt-aatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatg-gtctccgtgaccacgtttat 241  Q
    ||||||||||||| |||||  ||| ||| ||||||  | |||||| || ||||||| |||||||||||| ||||||||  ||||  |||||||| ||| |    
T  5573997 agagaaatgataggtagactcctttaatgtgtacactcttttgtaccactctaaaagatttcagttaactaaatatatatgtctttgtgaccacattttt 5573898  T
Q  242 ttagttgcgtgaccactattt----------atttggttaactaagtggaaaaatagtggtcacgcgcattttagtt 308  Q
    ||| |||||||||||||||||          |||||||||||||||||||||||||||||||||| |||||||||||    
T  5573897 ttaattgcgtgaccactatttttcaaaatttatttggttaactaagtggaaaaatagtggtcacgtgcattttagtt 5573821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 259 - 309
Target Start/End: Original strand, 5321981 - 5322031
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttg 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5321981 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttg 5322031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 182 - 337
Target Start/End: Original strand, 15714626 - 15714791
Alignment:
Q  182 tttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt-----------atttggtt 270  Q
    |||||| || ||| |||||||||||||| | ||||||||| | |  |||||||| |||  |||||||||||||||||||||           ||||||||    
T  15714626 tttgtaccactctgaaaaatttcagttagctaaatatatgatttatgtgaccacattttgttagttgcgtgaccactattttttcgaaatttatttggtt 15714725  T
Q  271 aactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 337  Q
    ||||||||||||||||||||||||||  ||||||||||  | ||||| | |||||||||||||||||    
T  15714726 aactaagtggaaaaatagtggtcacggacattttagttacgtgaccata-tttttcagcttttaaat 15714791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 165 - 263
Target Start/End: Original strand, 33286136 - 33286234
Alignment:
Q  165 cttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 263  Q
    |||||| |||||| ||||||||| |  ||||||||| || | ||||||||||||||||||| ||||||||| ||| || | ||||||||||||| ||||    
T  33286136 cttaatgtgtacacccatttgtacccctctaaaaaaatttaattaaccaaatatatggtctgcgtgaccacattttttcaattgcgtgaccacttttta 33286234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 259 - 308
Target Start/End: Original strand, 1240920 - 1240969
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagtt 308  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  1240920 atttatttggttaactaagtgggaaaatagtggtcacgcacattttagtt 1240969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 28700060 - 28700117
Alignment:
Q  166 ttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggt 223  Q
    ||||| ||||||||  |||||||||||||||||||||||||||||| |||||||||||    
T  28700060 ttaatgtgtacatcattttgtatcattctaaaaaatttcagttaactaaatatatggt 28700117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 165 - 263
Target Start/End: Complemental strand, 1251666 - 1251568
Alignment:
Q  165 cttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 263  Q
    |||||| |||||| ||||||||| || |||  ||||||||||||||| ||||||||| | |  | |||||| ||| || ||||||||||||||||||||    
T  1251666 cttaatgtgtacacccatttgtaccactctcgaaaatttcagttaactaaatatatgatttgtgagaccacattttttcagttgcgtgaccactattta 1251568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 259 - 337
Target Start/End: Original strand, 26493356 - 26493432
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 337  Q
    ||||||||| |||||||| |||||||||||| |||||||||| |||||||| | ||||||| ||||||||||| |||||    
T  26493356 atttatttgattaactaaatggaaaaatagttgtcacgcgca-tttagttgcgtgaccaca-tttttcagcttctaaat 26493432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 259 - 308
Target Start/End: Original strand, 1251496 - 1251545
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagtt 308  Q
    |||||||||||||||||||||| |||||||||||| ||| ||||||||||    
T  1251496 atttatttggttaactaagtgggaaaatagtggtcgcgcacattttagtt 1251545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 172 - 263
Target Start/End: Original strand, 5573706 - 5573797
Alignment:
Q  172 tgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 263  Q
    |||||| || |||||||||||||  || |||||||||||||||||||||| | |  ||||| || ||| || | ||||||||||||||||||    
T  5573706 tgtacacccttttgtatcattctcgaacatttcagttaaccaaatatatgatatatgtgactacattttttcaattgcgtgaccactattta 5573797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 263
Target Start/End: Complemental strand, 38606986 - 38606920
Alignment:
Q  197 aaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 263  Q
    ||||||||||||||| | ||||||||| | ||||||||| ||| || |||||||| |||||||||||    
T  38606986 aaaatttcagttaactacatatatggtttgcgtgaccacattttttcagttgcgttaccactattta 38606920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 182 - 263
Target Start/End: Complemental strand, 5322135 - 5322054
Alignment:
Q  182 tttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 263  Q
    ||||||||| ||| |||||||||| |||||||||||||||||||  |||| ||| ||| || | |||||||| || ||||||    
T  5322135 tttgtatcactctcaaaaatttcaattaaccaaatatatggtctgtgtgatcacattttttcaattgcgtgatcattattta 5322054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 31596884 - 31596820
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttt 324  Q
    |||||||||||||| ||||||||||||||||| | || |||| |||||||||  ||||||||||||    
T  31596884 atttatttggttaattaagtggaaaaatagtgattacacgca-tttagttgtctgaccacattttt 31596820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 262
Target Start/End: Original strand, 15233138 - 15233233
Alignment:
Q  166 ttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt 262  Q
    ||||| ||||||||  || ||| || ||| ||||||||||||||| ||||||||||||||| | || ||| ||| || |||| ||||||||||||||    
T  15233138 ttaatgtgtacatctcttcgtaccaatctgaaaaatttcagttaatcaaatatatggtctctgcgatcacattt-ttcagttacgtgaccactattt 15233233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 6295937 - 6296004
Alignment:
Q  195 aaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt 262  Q
    ||||||||  |||||||||||||||| || |  |||||||||||| ||||||| |||| |||||||||    
T  6295937 aaaaaattaaagttaaccaaatatatagtttatgtgaccacgtttttttagttacgtggccactattt 6296004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 263
Target Start/End: Original strand, 31596745 - 31596812
Alignment:
Q  196 aaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 263  Q
    ||||||| ||||||| |||||||||||| |  |||||||| ||| || |||||||| |||||||||||    
T  31596745 aaaaattacagttaatcaaatatatggtatgtgtgaccacattttttcagttgcgttaccactattta 31596812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 325
Target Start/End: Complemental strand, 32959631 - 32959584
Alignment:
Q  278 tggaaaaatagtggtcacgcgcattttagttgtgcgaccacatttttt 325  Q
    |||||||||||||||||| | ||||||||||||| ||||| |||||||    
T  32959631 tggaaaaatagtggtcacacacattttagttgtgtgaccatatttttt 32959584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 325
Target Start/End: Complemental strand, 6809885 - 6809819
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacatttttt 325  Q
    |||||||||||||| ||| ||||||||||||||||||  | |||||||| | |  ||||||||||||    
T  6809885 atttatttggttaattaaatggaaaaatagtggtcacatgtattttagtcgagtaaccacatttttt 6809819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 295
Target Start/End: Original strand, 24575926 - 24575962
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcac 295  Q
    |||||||||||||| |||||| |||||||||||||||    
T  24575926 atttatttggttaaataagtgaaaaaatagtggtcac 24575962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 235
Target Start/End: Complemental strand, 24576248 - 24576180
Alignment:
Q  167 taatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccac 235  Q
    |||| |||||| || |||||| || |||  ||||||||| |||||||||||||||||||  ||||||||    
T  24576248 taatgtgtacacccctttgtaccactctcgaaaatttcaattaaccaaatatatggtctgtgtgaccac 24576180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 149 - 337
Target Start/End: Original strand, 30905948 - 30906147
Alignment:
Q  149 aatgatagatagaca-tcttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagtt 247  Q
    |||||||| |||||| ||||||| ||||||||| |||||| |||||| |||| ||| ||||||||| |||||| ||||  |||||||| |||||||||||    
T  30905948 aatgataggtagacactcttaatgtgtacatccctttgtaacattctgaaaatttttagttaaccagatatattgtctgtgtgaccacatttatttagtt 30906047  T
Q  248 gcgtgaccactat-----------ttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaa 336  Q
    | |||||||||||           ||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||| ||||||    
T  30906048 gtgtgaccactatgtttccataatttatttgcttaactaagtggaaaaatagtggtcacgcgcattttagttgcgtgaccaca-tttttcagcatttaaa 30906146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 165 - 337
Target Start/End: Original strand, 1400688 - 1400870
Alignment:
Q  165 cttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt-- 262  Q
    |||||| |||||| || |||||| || ||| |||||||||||||||||||||||||||| |  |||||||| ||| || |||||||||||||||||||      
T  1400688 cttaatgtgtacacccttttgtaccaatctgaaaaatttcagttaaccaaatatatggtatgtgtgaccacattttttaagttgcgtgaccactattttt 1400787  T
Q  263 ---------atttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 337  Q
             |||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||| ||||||||||| |||||    
T  1400788 ccataatttatttggttaactaagtggaaaaatagtgatcacgcgcatttttgttgtgtgaccaca-tttttcagcttctaaat 1400870  T

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Target: chr2; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 166 - 309
Target Start/End: Complemental strand, 34175302 - 34175159
Alignment:
Q  166 ttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactatttatt 265  Q
    ||||| |||||| ||||||||| ||||||||||||||| |||||| |||||||||  | |  ||||| || ||  ||||||||||||| |||||||||||    
T  34175302 ttaatgtgtacacccatttgtaccattctaaaaaatttaagttaatcaaatatataatttgtgtgacaacattgttttagttgcgtgatcactatttatt 34175203  T
Q  266 tggttaactaagtggaaaaatagtggtcacgcgcattttagttg 309  Q
    |||||||||||||||||||||||  ||||| | |||||||||||    
T  34175202 tggttaactaagtggaaaaatagcagtcacacacattttagttg 34175159  T

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Target: chr2; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 196 - 308
Target Start/End: Original strand, 28527268 - 28527391
Alignment:
Q  196 aaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccact-----------atttatttggttaactaagtggaaaa 284  Q
    ||||||||||| ||||||||||||||||||  |||||||| ||| ||||||||||||||||||           |||||||||||||||||| |||||||    
T  28527268 aaaaatttcagctaaccaaatatatggtctgtgtgaccacatttttttagttgcgtgaccactatttttccagaatttatttggttaactaattggaaaa 28527367  T
Q  285 atagtggtcacgcgcattttagtt 308  Q
    ||||||||||| ||||| ||||||    
T  28527368 atagtggtcacacgcatgttagtt 28527391  T

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Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 259 - 338
Target Start/End: Complemental strand, 45306056 - 45305978
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaatg 338  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||| | | ||||| ||||||||||||||||||    
T  45306056 atttattcggttaactaagtggaaaaatagtggtcacgcacattttagttgcgtggccaca-tttttcagcttttaaatg 45305978  T

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Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 166 - 263
Target Start/End: Complemental strand, 30906240 - 30906143
Alignment:
Q  166 ttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 263  Q
    ||||| |||||| || |||||| || ||| |||||||||||||||||||||||||||||| |||||||||  || || |||| |||||||||||||||    
T  30906240 ttaatgtgtacacccttttgtaccactctgaaaaatttcagttaaccaaatatatggtctgcgtgaccaccatttttcagtttcgtgaccactattta 30906143  T

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Target: chr2; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 165 - 324
Target Start/End: Complemental strand, 33667510 - 33667340
Alignment:
Q  165 cttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt-- 262  Q
    |||||| ||||||  | |||||| || ||| |||||||| ||||||||||||||||||| |   ||| ||| ||| || |||||||||||||||||||      
T  33667510 cttaatatgtacactcttttgtaccactctgaaaaattttagttaaccaaatatatggtatgtatgaacacattttttaagttgcgtgaccactattttt 33667411  T
Q  263 ---------atttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttt 324  Q
             |||||||||||||||||||||||||||||| |||| ||||||| ||| | ||||||||||||    
T  33667410 tcagaatatatttggttaactaagtggaaaaatagtggttacgcacattttaattgcgtgaccacattttt 33667340  T

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Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 259 - 337
Target Start/End: Complemental strand, 43900618 - 43900541
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 337  Q
    |||||||||||||||||| | ||||||||||||||||| |||||||||||| | |||||||| |||||||||| |||||    
T  43900618 atttatttggttaactaaatagaaaaatagtggtcacgtgcattttagttgcgtgaccacat-ttttcagcttctaaat 43900541  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 256
Target Start/End: Complemental strand, 41212501 - 41212411
Alignment:
Q  165 cttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgacca 256  Q
    |||||| |||| | || |||||| || ||| |||||||| |||||||||||||||||||||  |||||||| ||| |||||||| |||||||    
T  41212501 cttaatatgtatacccctttgtaccactctgaaaaatttaagttaaccaaatatatggtctgtgtgaccacattt-tttagttgtgtgacca 41212411  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 257
Target Start/End: Original strand, 45305886 - 45305978
Alignment:
Q  165 cttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccac 257  Q
    |||||| ||||||  | |||||| || ||||||||||||||||||| ||||||||| ||||   ||||||  ||| || ||||||||||||||    
T  45305886 cttaatatgtacactcctttgtaccactctaaaaaatttcagttaatcaaatatatagtctgtatgaccatattttttcagttgcgtgaccac 45305978  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 263
Target Start/End: Original strand, 43900479 - 43900545
Alignment:
Q  197 aaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 263  Q
    |||||||||| |||| |||||||||||||  |||| ||| ||| || ||||| ||||||||||||||    
T  43900479 aaaatttcaggtaactaaatatatggtctgtgtgatcacattttttcagttgtgtgaccactattta 43900545  T

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Target: scaffold0043 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 228 - 348
Target Start/End: Complemental strand, 87143 - 87024
Alignment:
Q  228 gtgaccacgtttatttagttgcgtgaccactatttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttca 327  Q
    |||||||| ||| |||||||||||||| | ||||||||||||||||||||| ||||||||||||||||| | |||||||||| | |||||||| ||||||    
T  87143 gtgaccacatttttttagttgcgtgacaaatatttatttggttaactaagtagaaaaatagtggtcacgtgtattttagttgcgtgaccacat-ttttca 87045  T
Q  328 gcttttaaatgctagaaaaat 348  Q
    | || |||||||| |||||||    
T  87044 gtttctaaatgctggaaaaat 87024  T

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Target: scaffold0024 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 185 - 352
Target Start/End: Complemental strand, 112310 - 112143
Alignment:
Q  185 gtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttattt-agttgcgtgaccactatttatttggttaactaagtggaaa 283  Q
    |||||| ||| |||| ||| |||||| ||||||||| || |  || ||||| ||| ||| |||||||| |||||||||||||| ||||||||||||||||    
T  112310 gtatcactctgaaaattttaagttaatcaaatatatagtttgtgtaaccacattttttttagttgcgtaaccactatttatttagttaactaagtggaaa 112211  T
Q  284 aatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaatgctagaaaaatagtg 352  Q
    ||||||||||||| |||||||| ||| | ||||||  ||||||||||| ||||| || ||| |||||||    
T  112210 aatagtggtcacgtgcattttaattgcgtgaccac-gtttttcagcttctaaattctcgaacaatagtg 112143  T

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Target: scaffold1126 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold1126
Description:

Target: scaffold1126; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 196 - 337
Target Start/End: Original strand, 154 - 305
Alignment:
Q  196 aaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattt-----------atttggttaactaagtggaaaa 284  Q
    ||||||||||||||||||||||||||| ||  |||| ||| ||  ||||||||||||||||||| ||           |||||| ||| |||||||||||    
T  154 aaaaatttcagttaaccaaatatatggactgtgtgatcacattgttttagttgcgtgaccactaatttttcaaaaattatttggataagtaagtggaaaa 253  T
Q  285 atagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 337  Q
    |||||||||| |||||||||||||| | ||||||| ||||||||||| |||||    
T  254 atagtggtcatgcgcattttagttgcgtgaccaca-tttttcagcttctaaat 305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1126; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 165 - 263
Target Start/End: Complemental strand, 399 - 301
Alignment:
Q  165 cttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 263  Q
    |||||| ||||||||  |||||| || ||| |||| |||||||||||||||||||||||||  ||| ||||  || || ||||||||||||||||||||    
T  399 cttaatttgtacatctctttgtaccactctgaaaattttcagttaaccaaatatatggtctgtgtggccacactttttcagttgcgtgaccactattta 301  T

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Target: scaffold0251 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 259 - 325
Target Start/End: Original strand, 10634 - 10700
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacatttttt 325  Q
    ||||||||||||||||||||||||||||| |||||||| | |||||||||| | |||||||||||||    
T  10634 atttatttggttaactaagtggaaaaataatggtcacgggtattttagttgcgtgaccacatttttt 10700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 165 - 263
Target Start/End: Complemental strand, 10805 - 10707
Alignment:
Q  165 cttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactattta 263  Q
    |||||| ||||||| | |||||| || |||| ||||||||| |||||||||||||||||||  ||||| |  ||| || |||||| |||||||||||||    
T  10805 cttaatatgtacattcctttgtaccactctagaaaatttcaattaaccaaatatatggtctaggtgactatattttttaagttgcatgaccactattta 10707  T

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Target: scaffold0126 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 21433 - 21492
Alignment:
Q  166 ttaatctgtacatccatttgtatcattctaaaaaatttcagttaaccaaatatatggtct 225  Q
    ||||| ||||||||||||| || |||| |||||||||||||||||||||||||| |||||    
T  21433 ttaatgtgtacatccatttataccattttaaaaaatttcagttaaccaaatatacggtct 21492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 197 - 260
Target Start/End: Complemental strand, 21638 - 21575
Alignment:
Q  197 aaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgaccactat 260  Q
    ||||| |||||||||| ||||||||||||  |||||||| ||| || |||||||||||||||||    
T  21638 aaaatctcagttaaccgaatatatggtctgtgtgaccacattttttcagttgcgtgaccactat 21575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 259 - 305
Target Start/End: Original strand, 24040 - 24086
Alignment:
Q  259 atttatttggttaactaagtggaaaaatagtggtcacgcgcatttta 305  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||    
T  24040 atttatttggtaaaataagtggaaaaatagtggtcacgcgcatttta 24086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 24196 - 24112
Alignment:
Q  181 atttgtatcattctaaaaaatttcagttaaccaaatatatg--gtctccgtgaccacgtttatttagttgcgtgaccactattta 263  Q
    |||||||||| ||| |||||||||||| |||| ||||||||  ||||  ||||| || ||| || |||||| |||||||||||||    
T  24196 atttgtatcaatctgaaaaatttcagtgaaccgaatatatgtcgtctatgtgactacattttttcagttgcatgaccactattta 24112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 256
Target Start/End: Complemental strand, 24801 - 24738
Alignment:
Q  193 ctaaaaaatttcagttaaccaaatatatggtctccgtgaccacgtttatttagttgcgtgacca 256  Q
    |||||||| |||||||| |||||||||||||||  |||||||| |||  | |||||||||||||    
T  24801 ctaaaaaaattcagttagccaaatatatggtctatgtgaccacattttataagttgcgtgacca 24738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 49447 - 49484
Alignment:
Q  186 tatcattctaaaaaatttcagttaaccaaatatatggt 223  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  49447 tatcattctgaaaaatttaagttaaccaaatatatggt 49484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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