View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5855_low_1 (Length: 614)
Name: NF5855_low_1
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5855_low_1 |
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| [»] scaffold0212 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 18 - 604
Target Start/End: Original strand, 50568442 - 50569030
Alignment:
| Q |
18 |
attgtaaattagagaatgggagaaacaacaannnnnnncgtctttcaaagtaaacacatgcatatcatatacacaaaagagagaagatgatcaagaatag |
117 |
Q |
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| T |
50568442 |
attgtaaattagagaatgggagaaacaacaatttttttcgtctttcaaagtaaacacatgcatatcatatacacaaaagagagaagatgatcaagaatag |
50568541 |
T |
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| Q |
118 |
aggaacctaaaaatatgcaatagggttctttcacatcaactaagtcggta--atagcataactatgaaagcaatagtggtatacaacttgacttctttct |
215 |
Q |
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| T |
50568542 |
aggaacctaaaaatatgcaatagggttctttcacatcaactaagtcggtataacagcataactatgaaagcaatagtggtatacaacttgacttctttct |
50568641 |
T |
|
| Q |
216 |
cccacacaggctagcttcattgctttcatgccttgtggcggcttagagcatcctcaattctaatagtaatattttatggcacttcattgggggttctaac |
315 |
Q |
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| T |
50568642 |
cccacacatgctagcttcattgctttcatgccttgtggcggcttagagcatcctcaattctaatagtaatattttatggcacttcattgggggttctaac |
50568741 |
T |
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| Q |
316 |
gcccttccttttgattgatgcacaattgagtaggccggtcacgaggactacaagtgtgggatcagaaacgataaaaatagatcttcctactcaaacaaga |
415 |
Q |
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| T |
50568742 |
gcccttccttttgattgatgcacaattgagtaggccggtcacgaagactacaagtttgggatcagaaacgataaaaatagatcttcctactcaaacaaga |
50568841 |
T |
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| Q |
416 |
agtcctagggggttgccccttgcacctatgggataaaactcatgagaggttgtgtgtggataagtctgagcaacctcgactgattgagctataaggcttt |
515 |
Q |
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| T |
50568842 |
agtcctagggggttgccccttgcacctatgggataaaactcatgagaggctgtgtgtggacaagtctgagcaacctcgattgattgagctataaggcttt |
50568941 |
T |
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| Q |
516 |
tcttgtatgaacnnnnnnncattgtacaaccaacttacgtggaaaagatttgatatttgccgatttctccgtcaaagtgaatgcctatg |
604 |
Q |
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| T |
50568942 |
tcttgtatgaacaaacaaacattgtacaaccaacttacgtggaaaagattcgatatttgccgatttctccgtcaaagtgagtgcctatg |
50569030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0212 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0212
Description:
Target: scaffold0212; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 2480 - 2533
Alignment:
| Q |
202 |
cttgacttctttctcccacacaggctagcttcattgctttcatgccttgtggcg |
255 |
Q |
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| T |
2480 |
cttgacttctttcttccacataggctagcttccttgcttgcatgccttgtggcg |
2533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 132
Target Start/End: Complemental strand, 37289579 - 37289510
Alignment:
| Q |
63 |
caaagtaaacacatgcatatcatatacacaaaagagagaagatgatcaagaatagaggaacctaaaaata |
132 |
Q |
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| T |
37289579 |
caaaataaacacatgcagataaaatacacaaaatagagaagatcagtaagaatagcagaacctaaaaata |
37289510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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