View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5855_low_13 (Length: 420)

Name: NF5855_low_13
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5855_low_13
NF5855_low_13
[»] chr1 (4 HSPs)
chr1 (116-407)||(37201559-37201850)
chr1 (15-117)||(37200941-37201043)
chr1 (24-93)||(7794259-7794327)
chr1 (25-93)||(28040469-28040537)
[»] chr7 (2 HSPs)
chr7 (24-93)||(47679816-47679885)
chr7 (24-105)||(5827951-5828032)
[»] chr3 (2 HSPs)
chr3 (24-105)||(52411234-52411315)
chr3 (30-93)||(29862504-29862567)
[»] chr8 (4 HSPs)
chr8 (25-105)||(24125725-24125805)
chr8 (24-117)||(10950516-10950609)
chr8 (24-117)||(10958521-10958614)
chr8 (30-105)||(25021131-25021206)
[»] chr5 (3 HSPs)
chr5 (24-93)||(27337390-27337459)
chr5 (25-105)||(15291352-15291432)
chr5 (24-93)||(433990-434059)
[»] chr6 (4 HSPs)
chr6 (25-99)||(32116333-32116406)
chr6 (50-103)||(26224990-26225043)
chr6 (15-117)||(10402416-10402518)
chr6 (24-117)||(34305194-34305287)
[»] chr4 (2 HSPs)
chr4 (25-93)||(53171196-53171264)
chr4 (30-81)||(23809052-23809103)
[»] chr2 (1 HSPs)
chr2 (29-104)||(9684744-9684819)


Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 116 - 407
Target Start/End: Original strand, 37201559 - 37201850
Alignment:
Q  116 caattcaaggcccaattttggttctaaatcttgaatgatgtctagagttttagcaacctcctataaattaaaatattatcttgtagacttttgaagttta 215  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37201559 caattcaaggcccaattctggttctaaatctcgaatgatgtctagagttttagcaacctcctataaattaaaatattatcttgtagacttttgaagttta 37201658  T
Q  216 ctgaaaaattattttataaaaaatgttattctataagaattagagtagaaatcatgtaacaacttggcacctatatttttaaccatgtatttacacattt 315  Q
     | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37201659 ttaaaaaattattttataaaaaatgttattctataagaattagagtagaaatcatgtaacaacttggcacctatatttttaaccatgtatttacacattt 37201758  T
Q  316 gtacaatcttgcattagtannnnnnnnnaataatttaaaagaaaagagcaaacatacaccaaccaaaataagcaccttaattatgttgaaat 407  Q
    |||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37201759 gtacaatcttgcattagtatttttttttaataatttaaaagaaaagagcaaacatacaccaaccaaaataagcaccttaattatgttcaaat 37201850  T

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Target: chr1; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 37200941 - 37201043
Alignment:
Q  15 gacgacgtgcttgcaagtaaaactactaatgtcaaaatttgaaatcgtgccacgaagatcatccaaaacattatcaaaaatcgagtccataacacttatc 114  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  37200941 gacgacgtgcttgcaagtaaaactactaatgtcaaaatttggaatcgtgccacgaagatcatccaaagcattataaaaaatcgagtccataacacttatc 37201040  T
Q  115 cca 117  Q
    |||    
T  37201041 cca 37201043  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 7794327 - 7794259
Alignment:
Q  24 cttgcaagtaaaactactaatgtcaaaatttgaaatcgtgccacgaagatcatccaaaacattatcaaaa 93  Q
    |||||||||||||||||||| |||||||| || ||| || ||  ||||| ||||||||||||||||||||    
T  7794327 cttgcaagtaaaactactaa-gtcaaaatctggaatggtaccgtgaagaccatccaaaacattatcaaaa 7794259  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 28040537 - 28040469
Alignment:
Q  25 ttgcaagtaaaactactaatgtcaaaatttgaaatcgtgccacgaagatcatccaaaacattatcaaaa 93  Q
    |||| ||||||||| ||||  ||||||| |  |||||| ||||||||| |||||||| |||||||||||    
T  28040537 ttgctagtaaaactgctaacatcaaaatctagaatcgtaccacgaagaccatccaaagcattatcaaaa 28040469  T

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Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 47679816 - 47679885
Alignment:
Q  24 cttgcaagtaaaactactaatgtcaaaatttgaaatcgtgccacgaagatcatccaaaacattatcaaaa 93  Q
    |||||||||||||||||||| ||||||||||| ||||||  |||||||||||||||||||||||||||||    
T  47679816 cttgcaagtaaaactactaacgtcaaaatttggaatcgtaacacgaagatcatccaaaacattatcaaaa 47679885  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 5827951 - 5828032
Alignment:
Q  24 cttgcaagtaaaactactaatgtcaaaatttgaaatcgtgccacgaagatcatccaaaacattatcaaaaatcgagtccata 105  Q
    ||||||||||||||||||||||||||||| || |||||| |  |||||| |||||||| ||||||||||| |||||||||||    
T  5827951 cttgcaagtaaaactactaatgtcaaaatctggaatcgtacagcgaagaccatccaaagcattatcaaaattcgagtccata 5828032  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 52411315 - 52411234
Alignment:
Q  24 cttgcaagtaaaactactaatgtcaaaatttgaaatcgtgccacgaagatcatccaaaacattatcaaaaatcgagtccata 105  Q
    |||||||||||||||  |||||||||||||||||||||| ||||||||| ||| |||| |||||||||||  ||||||||||    
T  52411315 cttgcaagtaaaactgataatgtcaaaatttgaaatcgtaccacgaagaccattcaaagcattatcaaaatccgagtccata 52411234  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 29862504 - 29862567
Alignment:
Q  30 agtaaaactactaatgtcaaaatttgaaatcgtgccacgaagatcatccaaaacattatcaaaa 93  Q
    |||||||||||||||| |||||| |  |||||| ||||||||| |||||||| |||||||||||    
T  29862504 agtaaaactactaatgccaaaatctagaatcgtaccacgaagaccatccaaagcattatcaaaa 29862567  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 24125725 - 24125805
Alignment:
Q  25 ttgcaagtaaaactactaatgtcaaaatttgaaatcgtgccacgaagatcatccaaaacattatcaaaaatcgagtccata 105  Q
    |||| ||||||||||||||  ||||||| ||||||||| ||||||||| |||||||| |||| |||||| |||||||||||    
T  24125725 ttgctagtaaaactactaacatcaaaatctgaaatcgtaccacgaagaccatccaaagcattttcaaaattcgagtccata 24125805  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 10950609 - 10950516
Alignment:
Q  24 cttgcaagtaaaactactaatgtcaaaatttgaaatcgtgccacgaagatcatccaaaacattatcaaaaatcgagtccataacacttatccca 117  Q
    ||||||||||||| | |||| ||||||||||||||| ||  |||||||| ||| ||||| ||||| || | ||||||| ||| |||||||||||    
T  10950609 cttgcaagtaaaattgctaacgtcaaaatttgaaattgtatcacgaagaccattcaaaaaattataaacattcgagtctataccacttatccca 10950516  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 10958614 - 10958521
Alignment:
Q  24 cttgcaagtaaaactactaatgtcaaaatttgaaatcgtgccacgaagatcatccaaaacattatcaaaaatcgagtccataacacttatccca 117  Q
    ||||||||||||| | |||| ||||||||||||||| ||  |||||||| ||| ||||| ||||| || | ||||||| ||| |||||||||||    
T  10958614 cttgcaagtaaaattgctaacgtcaaaatttgaaattgtatcacgaagaccattcaaaaaattataaacattcgagtctataccacttatccca 10958521  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 25021206 - 25021131
Alignment:
Q  30 agtaaaactactaatgtcaaaatttgaaatcgtgccacgaagatcatccaaaacattatcaaaaatcgagtccata 105  Q
    |||||| || |||| |||||||| |  |||||| |||||||||||||||||| ||||||||||| |||| ||||||    
T  25021206 agtaaagctgctaacgtcaaaatctagaatcgtaccacgaagatcatccaaagcattatcaaaattcgactccata 25021131  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 27337390 - 27337459
Alignment:
Q  24 cttgcaagtaaaactactaatgtcaaaatttgaaatcgtgccacgaagatcatccaaaacattatcaaaa 93  Q
    ||||||||||||||| |||| |||||||| || |||||| || ||||||||||||||| |||||||||||    
T  27337390 cttgcaagtaaaactgctaacgtcaaaatctggaatcgttccgcgaagatcatccaaagcattatcaaaa 27337459  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 15291432 - 15291352
Alignment:
Q  25 ttgcaagtaaaactactaatgtcaaaatttgaaatcgtgccacgaagatcatccaaaacattatcaaaaatcgagtccata 105  Q
    |||| ||||||||| |||| |||||||| | |||| || ||||||||| |||||||||||||||| |||  ||||||||||    
T  15291432 ttgctagtaaaactgctaacgtcaaaatctaaaattgtaccacgaagaccatccaaaacattatcgaaatccgagtccata 15291352  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 433990 - 434059
Alignment:
Q  24 cttgcaagtaaaactactaatgtcaaaatttgaaatcgtgccacgaagatcatccaaaacattatcaaaa 93  Q
    ||||||||||||||| |||| |||||||| || |||||| ||  ||||| |||||||| |||||||||||    
T  433990 cttgcaagtaaaactgctaacgtcaaaatctggaatcgttccgtgaagaccatccaaagcattatcaaaa 434059  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 32116333 - 32116406
Alignment:
Q  25 ttgcaagtaaaactactaatgtcaaaatttgaaatcgtgccacgaagatcatccaaaacattatcaaaaatcgag 99  Q
    |||| ||||||||| |||| |||||| | || |||||| |||||||||||||||||| |||||||||||| ||||    
T  32116333 ttgctagtaaaactgctaacgtcaaa-tctggaatcgtaccacgaagatcatccaaagcattatcaaaaaccgag 32116406  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 26225043 - 26224990
Alignment:
Q  50 aatttgaaatcgtgccacgaagatcatccaaaacattatcaaaaatcgagtcca 103  Q
    |||||| ||| || |||||||||||||||||||||||||||||| | |||||||    
T  26225043 aatttgtaattgtaccacgaagatcatccaaaacattatcaaaattagagtcca 26224990  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 10402416 - 10402518
Alignment:
Q  15 gacgacgtgcttgcaagtaaaactactaatgtcaaaatttgaaatcgtgccacgaagatcatccaaaacattatcaaaaatcgagtccataacacttatc 114  Q
    ||||| || ||| ||||||||||| |||| ||||||||  | ||||||  | | |||| |||||||| |||||||||||  |||||||||| ||| ||||    
T  10402416 gacgatgtccttacaagtaaaactgctaacgtcaaaatcaggaatcgtatcgcaaagaccatccaaagcattatcaaaatccgagtccataccacatatc 10402515  T
Q  115 cca 117  Q
    |||    
T  10402516 cca 10402518  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 34305194 - 34305287
Alignment:
Q  24 cttgcaagtaaaactactaatgtcaaaatttgaaatcgtgccacgaagatcatccaaaacattatcaaaaatcgagtccataacacttatccca 117  Q
    |||||||||||||||  ||| |||||||| || |||||  ||  ||||| |||||||| |||||||||||   ||||||||| ||| |||||||    
T  34305194 cttgcaagtaaaactgttaacgtcaaaatctggaatcgcaccgtgaagaccatccaaagcattatcaaaatctgagtccataccacatatccca 34305287  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 53171196 - 53171264
Alignment:
Q  25 ttgcaagtaaaactactaatgtcaaaatttgaaatcgtgccacgaagatcatccaaaacattatcaaaa 93  Q
    |||| ||||||||||||||  ||||||| ||||||||  |||||||||  |||||||| ||||||||||    
T  53171196 ttgctagtaaaactactaacatcaaaatctgaaatcgcaccacgaagacaatccaaaatattatcaaaa 53171264  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 23809103 - 23809052
Alignment:
Q  30 agtaaaactactaatgtcaaaatttgaaatcgtgccacgaagatcatccaaa 81  Q
    |||||||||||||| |||||||||| ||||| | ||||||||| ||||||||    
T  23809103 agtaaaactactaaagtcaaaatttaaaatcataccacgaagaccatccaaa 23809052  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 9684819 - 9684744
Alignment:
Q  29 aagtaaaactactaatgtcaaaatttgaaatcgtgccacgaagatcatccaaaacattatcaaaaatcgagtccat 104  Q
    |||||||| | ||||  ||||||| || |||||  ||||||||| |||||||| ||||||||||| ||||||||||    
T  9684819 aagtaaaaatgctaacatcaaaatctggaatcgcaccacgaagaccatccaaagcattatcaaaattcgagtccat 9684744  T

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