View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5855_low_15 (Length: 379)
Name: NF5855_low_15
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5855_low_15 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 63290 - 63671
Alignment:
| Q |
1 |
ctagtgggatgacacgtgtaataaccccattgaataatggaatatgatcagggagggttaccaccgtagcacaaggcattaataga-------gctatgt |
93 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
63290 |
ctagtgggatgacacgtgtaataaccccattgaataaaggaatatgatcagggagggttaccaccgtagcacaaggcattaatagatctatcagctatgt |
63389 |
T |
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| Q |
94 |
tatg----------gggacctaaaaatgtcaaagtcaagccaatgacaatgaatacaaagtattgcatatgtagcagtctttgtcgtgttctttttctat |
183 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
63390 |
tatggtatggtatggggacctaaaaatgtcaaagtcaagccaatgacaatgaatacaaagtattgcatatgtagcagtctttgtcgtgttctttttctat |
63489 |
T |
|
| Q |
184 |
cctatccaacaaacgaccatgttccttcgtttgttggtaaaagatgccaagcacaaacactcctttccaaacaactttcgcacctcttatctttgtctaa |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
63490 |
cctatccaacaaacgaccatgttccttcgtttgttggtaaaagatgccaagcacaaacactcctttccaaacaactttcgcacctcttatctttgtctaa |
63589 |
T |
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| Q |
284 |
acatttttcagaaaaaggaaaac-aagaatacactcaccctagggatttgtgactgatcacaatattgctatgctaccttat |
364 |
Q |
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||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
63590 |
acatttttcagaaaaaggaaaacaaagaatacactccccctagggatttgtgactgatcacaatatggctatgctaccttat |
63671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 40909804 - 40909423
Alignment:
| Q |
1 |
ctagtgggatgacacgtgtaataaccccattgaataatggaatatgatcagggagggttaccaccgtagcacaaggcattaataga-------gctatgt |
93 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40909804 |
ctagtgggatgacacgtgtaataaccccattgaataaaggaatatgatcagggagggttaccaccgtagcacaaggcattaatagatctatcagctatgt |
40909705 |
T |
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| Q |
94 |
tatgg----------ggacctaaaaatgtcaaagtcaagccaatgacaatgaatacaaagtattgcatatgtagcagtctttgtcgtgttctttttctat |
183 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40909704 |
tatggtatggtatggggacctaaaaatgtcaaagtcaagccaatgacaatgaatacaaagtattgcatatgtagcagtctttgtcgtgttctttttctat |
40909605 |
T |
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| Q |
184 |
cctatccaacaaacgaccatgttccttcgtttgttggtaaaagatgccaagcacaaacactcctttccaaacaactttcgcacctcttatctttgtctaa |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40909604 |
cctatccaacaaacgaccatgttccttcgtttgttggtaaaagatgccaagcacaaacactcctttccaaacaactttcgcacctcttatctttgtctaa |
40909505 |
T |
|
| Q |
284 |
acatttttcagaaaaaggaaaac-aagaatacactcaccctagggatttgtgactgatcacaatattgctatgctaccttat |
364 |
Q |
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||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40909504 |
acatttttcagaaaaaggaaaacaaagaatacactccccctagggatttgtgactgatcacaatatggctatgctaccttat |
40909423 |
T |
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