View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5855_low_17 (Length: 366)
Name: NF5855_low_17
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5855_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 27 - 351
Target Start/End: Original strand, 28526532 - 28526856
Alignment:
| Q |
27 |
tacttacagtcacgaattagataatcttcaattctatctcaaatattgctttttgtggcaaatattcagagacagaccaaatttgaaggagaagctacat |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28526532 |
tacttacagtcacgaattagataatcttcaattctatctcaaattttgctttttggggcaaatattcagagacagaccaaatttgaaggagaagctacat |
28526631 |
T |
|
| Q |
127 |
agagttcttcctttggttaatcagaatatttgtcgaacaatttaatgtatcaaattataaattacaaatattaaaaagagatgatagttaattacatttg |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28526632 |
agagttcttcctttggttaatcagaatatttgtcgaacaatttaatgtatcaaattataaattacaaatattaaaaagagatgatagttaattacatttg |
28526731 |
T |
|
| Q |
227 |
atttatactatcctaatnnnnnnnnttaaatcttttgcataaattaccttcgatcattgatgaatttaaaattgtgtcaatttatttctcaaaagttaga |
326 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | || |
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| T |
28526732 |
atttatactatcctaataaaaaaaattaaatcttttgcataaattaccttcgatcattgatgaatttaaaattgtgtcaatttatttttcaaaaggttga |
28526831 |
T |
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| Q |
327 |
aaattaattgttgtccataaatatt |
351 |
Q |
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||||||||||||||||||||||||| |
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| T |
28526832 |
aaattaattgttgtccataaatatt |
28526856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 335
Target Start/End: Original strand, 40999777 - 40999818
Alignment:
| Q |
294 |
aaaattgtgtcaatttatttctcaaaagttagaaaattaatt |
335 |
Q |
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| T |
40999777 |
aaaattgtgtcaatttatttctcaaaatgttgaaaattaatt |
40999818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 335
Target Start/End: Complemental strand, 41728976 - 41728936
Alignment:
| Q |
295 |
aaattgtgtcaatttatttctcaaaagttagaaaattaatt |
335 |
Q |
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|||||||||||||||||||||||||| || |||||| |||| |
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| T |
41728976 |
aaattgtgtcaatttatttctcaaaaatttgaaaataaatt |
41728936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 334
Target Start/End: Complemental strand, 6035472 - 6035432
Alignment:
| Q |
294 |
aaaattgtgtcaatttatttctcaaaagttagaaaattaat |
334 |
Q |
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||||||||||||||||||||||||||| || ||||||||| |
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| T |
6035472 |
aaaattgtgtcaatttatttctcaaaattttaaaaattaat |
6035432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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