View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5855_low_21 (Length: 312)
Name: NF5855_low_21
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5855_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 5e-99; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 31320792 - 31320514
Alignment:
| Q |
18 |
actaataccttgatattcttttatgatagattcttgactggaaaccttctcactggacaagttcctcctgcttggggaaataatttagacgtgtgagcta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
31320792 |
actaataccttgatattcttttatgatagattcttgaccggaaaccttctcactggacaagttcctcctgcttggggaaagaattcagacgtgtgagcta |
31320693 |
T |
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| Q |
118 |
tctttctaatactacnnnnnnnn--------gatcaagctaaaaatg-aatataaaactcaggagctgcctgaaccacatacaatcaaacaatccaaact |
208 |
Q |
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||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31320692 |
tctttctaatactacttttttttttttttttgatcaagcttaaaatggaatataaaactcaggagctgcctgaaccacatacaatcaaacaatccaaact |
31320593 |
T |
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| Q |
209 |
aagacaacaaaagagaacacccctgccaatggaggtacaaagaccacatccaacaatggctaccac-taagactagctat |
287 |
Q |
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| T |
31320592 |
aagacaacaaaa-agaacaccccttccaatggaggtacaaagaccacatccaacaatggctaccacgtaagactagctat |
31320514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 142 - 272
Target Start/End: Complemental strand, 9447357 - 9447225
Alignment:
| Q |
142 |
atcaagctaa-aaatg-aatataaaactcaggagctgcctgaaccacatacaatcaaacaatccaaactaagacaacaaaagagaacacccctgccaatg |
239 |
Q |
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|||||||||| ||||| ||||||| ||||||||| |||||||||| ||||||| ||||||| |||||||||||| ||||||||||||| |||||||||| |
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| T |
9447357 |
atcaagctaagaaatgcaatataatactcaggagatgcctgaaccgcatacaaataaacaattcaaactaagacagcaaaagagaacacacctgccaatg |
9447258 |
T |
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| Q |
240 |
gaggtacaaagaccacatccaacaatggctacc |
272 |
Q |
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| T |
9447257 |
gaggtacaaagaccaaatccatcaatggctacc |
9447225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 31306322 - 31306219
Alignment:
| Q |
20 |
taataccttgatattcttttatgatagattcttgactggaaaccttctcactggacaagttcctcctgcttggggaaataatttagacgtgtgagctatc |
119 |
Q |
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||||| ||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||| |||| |
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| T |
31306322 |
taatatcttgatattctattatgatagatttttgacaggaaaccttctcactggacaagttccttctgcttggggaaaggattcagacgtgtgagttatc |
31306223 |
T |
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| Q |
120 |
tttc |
123 |
Q |
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|||| |
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| T |
31306222 |
tttc |
31306219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 31359718 - 31359606
Alignment:
| Q |
20 |
taataccttgatattcttttatgatagattcttgactggaaaccttctcactggacaagttcctcctgcttggggaaataatttagacgtgtgagctatc |
119 |
Q |
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||||| |||||||||||||| | |||||| || ||||||||||| |||||||||| ||| |||||||||| |||| ||||| || ||||||| |||| |
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| T |
31359718 |
taatatcttgatattcttttgtcgtagatttttaactggaaacctactcactggaccagtgcctcctgctttgggacataatgccgatgtgtgagttatc |
31359619 |
T |
|
| Q |
120 |
tttctaatactac |
132 |
Q |
| |
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|||| ||||||| |
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|
| T |
31359618 |
attcttatactac |
31359606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 31255224 - 31255170
Alignment:
| Q |
20 |
taataccttgatattcttttatgatagattcttgactggaaaccttctcactgga |
74 |
Q |
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||||| |||||||| ||||||||||||||| || ||||||||||||||||||||| |
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| T |
31255224 |
taatatcttgatatacttttatgatagatttttaactggaaaccttctcactgga |
31255170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 31292207 - 31292153
Alignment:
| Q |
20 |
taataccttgatattcttttatgatagattcttgactggaaaccttctcactgga |
74 |
Q |
| |
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||||| |||||||| ||||||||||||||| || ||||||||||||||||||||| |
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| T |
31292207 |
taatatcttgatatacttttatgatagatttttaactggaaaccttctcactgga |
31292153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 31281424 - 31281370
Alignment:
| Q |
20 |
taataccttgatattcttttatgatagattcttgactggaaaccttctcactgga |
74 |
Q |
| |
|
||||| ||||||||||||||||| |||||| || | ||||||||||||||||||| |
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|
| T |
31281424 |
taatatcttgatattcttttatggtagatttttaagtggaaaccttctcactgga |
31281370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 31386371 - 31386320
Alignment:
| Q |
28 |
tgatattcttttatgatagattcttgactggaaaccttctcactggacaagt |
79 |
Q |
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|||||||||||| || |||||| || || ||||||||||||||||||||||| |
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| T |
31386371 |
tgatattcttttttggtagatttttaaccggaaaccttctcactggacaagt |
31386320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 141 - 302
Target Start/End: Complemental strand, 31610443 - 31610280
Alignment:
| Q |
141 |
gatcaagctaa-aaatg-aatataaaactcaggagctgcctgaaccacatacaatcaaacaatccaaactaagacaacaaaagagaacacccctgccaat |
238 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31610443 |
gatcaagctaagaaatgcaatataaaactcaggagatgcctgaaccgcatacaatcaaacaatccaaactaagacaacaaaagagaacacacctgccaat |
31610344 |
T |
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| Q |
239 |
ggaggtacaaagaccacatccaacaatggctaccactaagactagctatacaacactacctatg |
302 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||| ||||| |
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|
| T |
31610343 |
ggaggtacaaagaccacatctatcaatggctaccactaagactagctatacaacgctagctatg |
31610280 |
T |
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