View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5855_low_22 (Length: 302)

Name: NF5855_low_22
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5855_low_22
NF5855_low_22
[»] chr6 (6 HSPs)
chr6 (11-286)||(712933-713208)
chr6 (11-273)||(710512-710774)
chr6 (11-250)||(702266-702505)
chr6 (11-250)||(717568-717807)
chr6 (11-252)||(716791-717029)
chr6 (11-115)||(722675-722779)
[»] chr1 (1 HSPs)
chr1 (11-233)||(35313621-35313843)
[»] chr5 (2 HSPs)
chr5 (18-137)||(20357809-20357928)
chr5 (18-124)||(20353927-20354033)
[»] chr4 (3 HSPs)
chr4 (18-137)||(5278442-5278561)
chr4 (18-137)||(5286423-5286542)
chr4 (18-124)||(5282535-5282641)
[»] chr2 (1 HSPs)
chr2 (18-154)||(6235378-6235514)


Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 286
Target Start/End: Original strand, 712933 - 713208
Alignment:
Q  11 caaaggagatgtttttgtgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaat 110  Q
    |||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  712933 caaaggagatgtgtttgtgtttccaattggcctcattcactttcaattgaatgttgggtatggaaatgcagttgctattgctggacttagcagccaaaat 713032  T
Q  111 ccaggtgtaatcacaattgctaatgctgtatttggatctaatccaaaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagttg 210  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |    
T  713033 cctggtgtaatcacaattgctaatgctgtatttggatctaatccaaaaatttcttcagaagttctcaccaaagcttttcaagttgacaataatatagtgg 713132  T
Q  211 acaatcttcaaaaacaattctgggtggacaacaactagaattgcaggctgtgatatgtgcttgaatcactaaattt 286  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  713133 ataatcttcaaaaacaattctgggtggacaacaactagaattgcaggctgtgatatgtgcttgaatcactaaattt 713208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 273
Target Start/End: Complemental strand, 710774 - 710512
Alignment:
Q  11 caaaggagatgtttttgtgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaat 110  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  710774 caaaggagatgtgtttgtgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaat 710675  T
Q  111 ccaggtgtaatcacaattgctaatgctgtatttggatctaatccaaaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagttg 210  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  710674 cctggtgtaatcacaattgctaatgctgtatttggatctaatccaaaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagtgg 710575  T
Q  211 acaatcttcaaaaacaattctgggtggacaacaactagaattgcaggctgtgatatgtgcttg 273  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||| ||||    
T  710574 acaatcttcaaaaacaattttgggtggacaacaactagaattgcaggtcgtgatatgtacttg 710512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 702505 - 702266
Alignment:
Q  11 caaaggagatgtttttgtgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaat 110  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  702505 caaaggagatgtgtttgtgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaat 702406  T
Q  111 ccaggtgtaatcacaattgctaatgctgtatttggatctaatccaaaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagttg 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  702405 ccaggtgtaatcacaattgctaatgctgtatttggatctaatccaaaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagtgg 702306  T
Q  211 acaatcttcaaaaacaattctgggtggacaacaactagaa 250  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  702305 acaatcttcaaaaacaattctgggtggacaactactagaa 702266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 717807 - 717568
Alignment:
Q  11 caaaggagatgtttttgtgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaat 110  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  717807 caaaggagatgtgtttgtgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaat 717708  T
Q  111 ccaggtgtaatcacaattgctaatgctgtatttggatctaatccaaaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagttg 210  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  717707 cctggtgtaatcacaattgctaatgctgtatttggatctaatccaaaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagtgg 717608  T
Q  211 acaatcttcaaaaacaattctgggtggacaacaactagaa 250  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  717607 acaatcttcaaaaacaattctgggtggacaacaactagaa 717568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 716791 - 717029
Alignment:
Q  11 caaaggagatgtttttgtgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaat 110  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||   ||| ||||  |||||||||| ||||  ||| ||||||||| |||||| |||    
T  716791 caaaggagatgtctttgtgtttccaattggtcttattcacttccaacataatatgggggatggaaatgcggttgtcatttctggacttaacagccataat 716890  T
Q  111 ccaggtgtaatcacaattgctaatgctgtatttggatctaatccaaaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagttg 210  Q
     || | || ||||| |||  ||| |  |||||||| |||||||   |||| ||||||||| |||||||||| ||| ||||||| |||||||| |||||||    
T  716891 tcaagagttatcactattattaaggaggtatttgggtctaatc---aaatttcttcagaacttctcaccaaggctcttcaagtggacaataacatagttg 716987  T
Q  211 acaatcttcaaaaacaattctgggtggacaacaactagaatt 252  Q
    |||||||||| |||||||||||| |||||||||| |||||||    
T  716988 acaatcttcagaaacaattctggttggacaacaattagaatt 717029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 722675 - 722779
Alignment:
Q  11 caaaggagatgtttttgtgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||| |    |||   ||| |||||||||| ||||| ||| ||||| ||||||| ||||||    
T  722675 caaaggagatgtttttgtgtttccaattggtctcattcacttcgagcataatacaggagatggaaatgcggttgcaatttctggatttagcagtcaaaat 722774  T
Q  111 ccagg 115  Q
    |||||    
T  722775 ccagg 722779  T

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Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 233
Target Start/End: Original strand, 35313621 - 35313843
Alignment:
Q  11 caaaggagatgtttttgtgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaat 110  Q
    |||||| ||||| |||||||||||||| ||||||||||||||||||||||| || || |||||  | ||  |||| |||||||| ||||| ||||||||     
T  35313621 caaaggtgatgtatttgtgtttccaatcggtctcattcacttccaattgaacgttggttatggggaggctattgccattgctggtcttagtagccaaaac 35313720  T
Q  111 ccaggtgtaatcacaattgctaatgctgtatttggatctaatccaaaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagttg 210  Q
    || || || || || ||||| |||||||| ||||||||||| |||  ||| ||||  ||||||||||||||||| |||||||| || || ||| || | |    
T  35313721 cctggagtgattaccattgcaaatgctgtgtttggatctaaaccaccaatttctttggaagttctcaccaaagcctttcaagtggataaaaatgtaatcg 35313820  T
Q  211 acaatcttcaaaaacaattctgg 233  Q
    || |||||||||| |||||||||    
T  35313821 actatcttcaaaagcaattctgg 35313843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 20357928 - 20357809
Alignment:
Q  18 gatgtttttgtgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatccaggtg 117  Q
    ||||| |||||||| ||||||||||| ||||| || ||| |||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| |    
T  20357928 gatgtgtttgtgttcccaattggtcttattcattttcaactgaatgtgggatatggcaatgccgttgctattgctggacttagcagtcaaaatccaggag 20357829  T
Q  118 taatcacaattgctaatgct 137  Q
    | |||||  |||| ||||||    
T  20357828 ttatcaccgttgcaaatgct 20357809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 20353927 - 20354033
Alignment:
Q  18 gatgtttttgtgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatccaggtg 117  Q
    ||||| |||||||| ||||||||||| ||||| || ||| |||||||||||||||| || || ||||||||||||||||||||||| ||||||||||| |    
T  20353927 gatgtgtttgtgttcccaattggtcttattcattttcaactgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaatccaggag 20354026  T
Q  118 taatcac 124  Q
    |||||||    
T  20354027 taatcac 20354033  T

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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 5278561 - 5278442
Alignment:
Q  18 gatgtttttgtgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatccaggtg 117  Q
    ||||| |||||||| ||||||||||| ||||| || ||| |||||||||||||||| || || ||||||||||||||||||||||| ||||||||||| |    
T  5278561 gatgtgtttgtgttcccaattggtcttattcattttcaactgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaatccaggag 5278462  T
Q  118 taatcacaattgctaatgct 137  Q
    | |||||  |||| ||||||    
T  5278461 ttatcactgttgcaaatgct 5278442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 5286542 - 5286423
Alignment:
Q  18 gatgtttttgtgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatccaggtg 117  Q
    ||||| |||||||| ||||||||||| ||||| || ||| |||||||||||||||| || || ||||||||||||||||||||||| ||||||||||| |    
T  5286542 gatgtgtttgtgttcccaattggtcttattcattttcaactgaatgtgggatatggcaacgccgttgctattgctggacttagcagtcaaaatccaggag 5286443  T
Q  118 taatcacaattgctaatgct 137  Q
    | |||||  |||| ||||||    
T  5286442 ttatcactgttgcaaatgct 5286423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 5282535 - 5282641
Alignment:
Q  18 gatgtttttgtgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatccaggtg 117  Q
    ||||| |||||||| || |||||||| ||||| || ||  |||||||||||||||| || || ||||||||||||||||||||||| ||||| ||||| |    
T  5282535 gatgtgtttgtgttcccgattggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaacccaggag 5282634  T
Q  118 taatcac 124  Q
    | |||||    
T  5282635 ttatcac 5282641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 6235514 - 6235378
Alignment:
Q  18 gatgtttttgtgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatccaggtg 117  Q
    ||||| |||||||| ||||||||||| ||||| || ||| | |||||||||||||| || || ||||||||||||||||||||||| ||||| ||||| |    
T  6235514 gatgtgtttgtgttcccaattggtcttattcattttcaactaaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaacccaggag 6235415  T
Q  118 taatcacaattgctaatgctgtatttggatctaatcc 154  Q
    | |||||  |||| |||||| | |||  |||||||||    
T  6235414 ttatcaccgttgcaaatgctttgtttaaatctaatcc 6235378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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