View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5855_low_24 (Length: 270)

Name: NF5855_low_24
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5855_low_24
NF5855_low_24
[»] chr5 (10 HSPs)
chr5 (20-270)||(30084885-30085135)
chr5 (44-190)||(11617243-11617389)
chr5 (44-185)||(4943536-4943678)
chr5 (82-194)||(5247863-5247975)
chr5 (45-199)||(9159446-9159600)
chr5 (44-169)||(32233012-32233137)
chr5 (18-147)||(7506001-7506130)
chr5 (73-170)||(13191724-13191821)
chr5 (85-194)||(31933465-31933573)
chr5 (72-186)||(29293200-29293313)
[»] chr3 (20 HSPs)
chr3 (18-270)||(25045355-25045607)
chr3 (18-270)||(32278351-32278593)
chr3 (45-185)||(27011191-27011331)
chr3 (44-185)||(39439839-39439980)
chr3 (18-185)||(42029263-42029431)
chr3 (108-223)||(40024791-40024906)
chr3 (91-226)||(42957259-42957393)
chr3 (82-240)||(44713265-44713429)
chr3 (44-169)||(14567853-14567978)
chr3 (44-199)||(25909351-25909507)
chr3 (34-208)||(23420225-23420402)
chr3 (73-170)||(49368372-49368469)
chr3 (42-185)||(29765198-29765340)
chr3 (76-166)||(2230101-2230191)
chr3 (34-165)||(23466693-23466826)
chr3 (44-169)||(30813293-30813419)
chr3 (49-104)||(2266894-2266949)
chr3 (80-179)||(24374193-24374292)
chr3 (73-170)||(20983266-20983363)
chr3 (44-113)||(40026083-40026152)
[»] chr2 (8 HSPs)
chr2 (18-270)||(28199108-28199360)
chr2 (18-185)||(28219001-28219169)
chr2 (75-220)||(44246371-44246516)
chr2 (44-190)||(10354264-10354410)
chr2 (72-205)||(1499181-1499314)
chr2 (44-204)||(7444638-7444797)
chr2 (76-184)||(17999928-18000035)
chr2 (73-170)||(20717593-20717690)
[»] chr4 (18 HSPs)
chr4 (18-240)||(35033741-35033963)
chr4 (18-199)||(41809857-41810043)
chr4 (45-194)||(50859177-50859326)
chr4 (162-245)||(13779370-13779453)
chr4 (34-181)||(31227697-31227843)
chr4 (19-194)||(46944030-46944205)
chr4 (44-208)||(4292599-4292760)
chr4 (44-185)||(22405045-22405187)
chr4 (44-190)||(35292054-35292200)
chr4 (18-185)||(21263561-21263729)
chr4 (47-194)||(41223631-41223779)
chr4 (18-83)||(13779316-13779381)
chr4 (76-185)||(48084723-48084832)
chr4 (44-117)||(3121237-3121310)
chr4 (44-169)||(26861354-26861479)
chr4 (24-83)||(4342109-4342168)
chr4 (81-199)||(55841403-55841522)
chr4 (81-199)||(55777223-55777342)
[»] chr7 (8 HSPs)
chr7 (18-245)||(19625400-19625627)
chr7 (45-220)||(23417160-23417335)
chr7 (93-221)||(35759791-35759919)
chr7 (19-223)||(12633403-12633615)
chr7 (45-202)||(5925093-5925250)
chr7 (73-206)||(261707-261840)
chr7 (72-221)||(36657545-36657694)
chr7 (45-170)||(29428919-29429044)
[»] scaffold0110 (1 HSPs)
scaffold0110 (45-220)||(38517-38687)
[»] scaffold0127 (1 HSPs)
scaffold0127 (45-199)||(30103-30257)
[»] chr1 (22 HSPs)
chr1 (45-199)||(41404078-41404232)
chr1 (72-220)||(42365919-42366067)
chr1 (44-182)||(15581575-15581713)
chr1 (72-190)||(48046435-48046553)
chr1 (71-185)||(42934255-42934369)
chr1 (45-133)||(50678166-50678254)
chr1 (76-185)||(34969816-34969924)
chr1 (44-169)||(42117145-42117270)
chr1 (44-156)||(16302715-16302827)
chr1 (79-194)||(39793621-39793736)
chr1 (24-177)||(19551166-19551318)
chr1 (44-169)||(49741324-49741449)
chr1 (44-172)||(50139554-50139682)
chr1 (45-123)||(49764907-49764985)
chr1 (155-220)||(50678096-50678161)
chr1 (155-218)||(7521240-7521303)
chr1 (83-170)||(30190811-30190898)
chr1 (45-116)||(7741115-7741186)
chr1 (72-174)||(31991631-31991732)
chr1 (44-117)||(23473768-23473841)
chr1 (73-173)||(7910900-7911000)
chr1 (130-174)||(35306749-35306793)
[»] scaffold0022 (2 HSPs)
scaffold0022 (18-194)||(44089-44265)
scaffold0022 (18-194)||(77810-77986)
[»] scaffold0039 (1 HSPs)
scaffold0039 (47-194)||(56928-57075)
[»] scaffold0224 (1 HSPs)
scaffold0224 (71-185)||(12402-12516)
[»] chr8 (12 HSPs)
chr8 (47-194)||(34924711-34924859)
chr8 (45-183)||(38679751-38679888)
chr8 (49-220)||(28873655-28873829)
chr8 (44-194)||(42025316-42025470)
chr8 (72-194)||(14112307-14112430)
chr8 (44-169)||(11354777-11354902)
chr8 (73-170)||(22531293-22531390)
chr8 (73-170)||(22535978-22536075)
chr8 (73-170)||(25993899-25993996)
chr8 (44-172)||(29844247-29844375)
chr8 (44-185)||(30800191-30800332)
chr8 (74-194)||(5358200-5358320)
[»] scaffold0227 (1 HSPs)
scaffold0227 (44-134)||(221-311)
[»] chr6 (6 HSPs)
chr6 (74-175)||(10871263-10871364)
chr6 (74-170)||(33091175-33091271)
chr6 (44-169)||(7365049-7365174)
chr6 (44-174)||(19694550-19694680)
chr6 (44-117)||(29063579-29063652)
chr6 (44-117)||(29118433-29118506)
[»] scaffold0097 (1 HSPs)
scaffold0097 (73-170)||(21430-21527)
[»] scaffold0011 (1 HSPs)
scaffold0011 (18-110)||(9274-9366)


Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 20 - 270
Target Start/End: Original strand, 30084885 - 30085135
Alignment:
Q  20 tggaatgggatggaatagagtcagattccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccact 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30084885 tggaatgggatggaatagagtcagattccattgtttggttttgcaaaattgtaatggaatggaatggaatgtgatggaactcattccatccaataccact 30084984  T
Q  120 cattcatccaatttttcattcctcccaaattgggatgtatccaatggaatggaacacattaataatccaattacatttttatccctactatttctatttc 219  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  30084985 cattcatccaattttccattcctcccaaattggggtgtatccaatggaatggaacacattaataactcaattacatttttatccctactatttctatttc 30085084  T
Q  220 attagccactcctcattccctgtttcnnnnnnncattgattgtttcttgtt 270  Q
    ||||||||||||||||||| ||||||       ||||||||||||||||||    
T  30085085 attagccactcctcattccatgtttcttttttccattgattgtttcttgtt 30085135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 44 - 190
Target Start/End: Original strand, 11617243 - 11617389
Alignment:
Q  44 attccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctc 143  Q
    ||||||||||||||||||||||||    |||||||||||||||| |||||||||||||||||||||||||||||| |||| | |||| |||||||||| |    
T  11617243 attccattgtttggttttgcaaaaaatgaatggaatggaatggagtgtgatggaactcattccatccaataccacccattaagccaaattttcattcccc 11617342  T
Q  144 ccaaattgggatgtatccaatggaatggaacacattaataatccaat 190  Q
    ||||||| |  ||||||||||||||||||| |||| |||||| ||||    
T  11617343 ccaaattagtgtgtatccaatggaatggaatacataaataatacaat 11617389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 44 - 185
Target Start/End: Original strand, 4943536 - 4943678
Alignment:
Q  44 attccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctc 143  Q
    ||||||||||||||||||| ||||  |  ||||||||||||||| ||||||||||| |||||||||||||||||||||||| | ||||||| |||||| |    
T  4943536 attccattgtttggttttgtaaaaaagggatggaatggaatggagtgtgatggaacccattccatccaataccactcattccttcaattttccattccac 4943635  T
Q  144 ccaaattgggatgtatccaatggaatggaa-cacattaataat 185  Q
    |||| ||||| ||| ||||||||||||||| ||||||||||||    
T  4943636 ccaatttggggtgtttccaatggaatggaaccacattaataat 4943678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 82 - 194
Target Start/End: Complemental strand, 5247975 - 5247863
Alignment:
Q  82 aatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatggaacacattaa 181  Q
    |||||||||||||||||| ||||| ||||||||||||||||||| |||||||| ||||||  |||| ||  | |||| ||||| ||||||||||||||||    
T  5247975 aatggaatgtgatggaacccattcaatccaataccactcattcaaccaattttccattccatccaatttaaggtgtacccaatagaatggaacacattaa 5247876  T
Q  182 taatccaattaca 194  Q
    |||| ||||||||    
T  5247875 taatacaattaca 5247863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 45 - 199
Target Start/End: Original strand, 9159446 - 9159600
Alignment:
Q  45 ttccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcc 144  Q
    |||||||||||||||||| ||||    ||||||| |||||||||||||||||||| |||||||||||||||||| |||| ||||||| || |||||| ||    
T  9159446 ttccattgtttggttttgtaaaaaa--aatggaaaggaatggaatgtgatggaacccattccatccaataccacccatttatccaatcttccattccccc 9159543  T
Q  145 caaattgggatgt--atccaatggaatggaacacattaataatccaattacattttt 199  Q
     || ||| | |||  ||||||| |||||||||||||| ||||| || ||||| ||||    
T  9159544 taatttgaggtgtgcatccaatagaatggaacacattgataatacagttacaatttt 9159600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 169
Target Start/End: Original strand, 32233012 - 32233137
Alignment:
Q  44 attccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctc 143  Q
    |||||||||||||| |||||||||    |||||| |||||||||||   |||||||||||||||||||||||||| ||  | | ||||||||||||||      
T  32233012 attccattgtttggatttgcaaaaagtgaatggagtggaatggaatacaatggaactcattccatccaataccacccaaaccttcaatttttcattccct 32233111  T
Q  144 ccaaattgggatgtatccaatggaat 169  Q
    |||||||||| |||||||||||||||    
T  32233112 ccaaattggggtgtatccaatggaat 32233137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 7506130 - 7506001
Alignment:
Q  18 aatggaatgggatggaatagagtcagattccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaatacca 117  Q
    ||||||||||  ||| ||| || || ||||||||||||||||||| ||||   |||||||||| ||| || ||||||||||   ||||||||||||||||    
T  7506130 aatggaatggagtgggataaagccacattccattgtttggttttgtaaaaaattaatggaatgaaatagagtgtgatggaatcaattccatccaatacca 7506031  T
Q  118 ctcattcatccaatttttcattcctcccaa 147  Q
    |||||| | |||||||| |||||| |||||    
T  7506030 ctcatttaaccaattttccattccccccaa 7506001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 73 - 170
Target Start/End: Complemental strand, 13191821 - 13191724
Alignment:
Q  73 atggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatg 170  Q
    ||||||||||||||||||  |||||||  ||||||| | |||||||||| || | |||||| ||||||| ||||| |||||| |||||||||||||||    
T  13191821 atggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatg 13191724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 85 - 194
Target Start/End: Complemental strand, 31933573 - 31933465
Alignment:
Q  85 ggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatggaacacattaataa 184  Q
    ||||||| ||||||||||||||||||||||||| |||| ||  |||||||||||||| || ||   | | ||||| |||||||||| |||||||||||||    
T  31933573 ggaatgtaatggaactcattccatccaataccattcatccaatcaatttttcattcc-cctaatcagaggtgtattcaatggaatgaaacacattaataa 31933475  T
Q  185 tccaattaca 194  Q
    | ||||||||    
T  31933474 tacaattaca 31933465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 186
Target Start/End: Original strand, 29293200 - 29293313
Alignment:
Q  72 aatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatgg 171  Q
    |||||||||||| ||| || |||||||| || |||||||||| ||| ||||| |  ||| |||||||||| ||||| |||||  ||||||| ||||||||    
T  29293200 aatggaatggaacggagtgggatggaacccactccatccaatgccattcattaaatcaaattttcattccccccaatttggg-ggtatccagtggaatgg 29293298  T
Q  172 aacacattaataatc 186  Q
    || ||||||||||||    
T  29293299 aatacattaataatc 29293313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 25045355 - 25045607
Alignment:
Q  18 aatggaatgggatggaatagagtcagattccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaatacca 117  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25045355 aatgaaatgggatggaatagagttagattccattgtttggttttgcaaaattgtaatggaatggaatggaatgtgatggaactcattccatccaatacca 25045454  T
Q  118 ctcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatggaacacattaataatccaattacatttttatccctactatttctatt 217  Q
    ||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  25045455 ctcattcatccaattttccattcctcccaaattggtgtgtatccaatggaatggaacacattaataactcaattacatttttatccctactatttctatt 25045554  T
Q  218 tcattagccactcctcattccctgtttcnnnnnnncattgattgtttcttgtt 270  Q
    ||||||| ||||||||||||||||||||       ||||||||||||||||||    
T  25045555 tcattagtcactcctcattccctgtttcttttttccattgattgtttcttgtt 25045607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 32278351 - 32278593
Alignment:
Q  18 aatggaatgggatggaatagagtcagattccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaatacca 117  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||          ||||||||||||||||||||||||||||||||    
T  32278351 aatggaatgggatggaatagagttagattccattgtttggttttgcaaaattgtaatg----------gaatgtgatggaactcattccatccaatacca 32278440  T
Q  118 ctcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatggaacacattaataatccaattacatttttatccctactatttctatt 217  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||  |||||||||||||||||||| ||||||||||    
T  32278441 ctcattcatccaattttccattcctcccaaattggggtgtatccaatggaattgaacacattaataactcaattacatttttatccctattatttctatt 32278540  T
Q  218 tcattagccactcctcattccctgtttcnnnnnnncattgattgtttcttgtt 270  Q
    ||||||| ||||||||||||||||||||       ||||||||||||||||||    
T  32278541 tcattagtcactcctcattccctgtttcttttttccattgattgtttcttgtt 32278593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 45 - 185
Target Start/End: Original strand, 27011191 - 27011331
Alignment:
Q  45 ttccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcc 144  Q
    |||||||||||||||||| ||||  | |||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||  |    
T  27011191 ttccattgtttggttttgtaaaaaaggaatggaatggaatggagtgtgatggaacccattccatccaataccactcattcttccaatttttcattccatc 27011290  T
Q  145 caaattgggatgtatccaatggaatggaacacattaataat 185  Q
    ||| ||||| |||||||||||||||| ||||||||||||||    
T  27011291 caatttggggtgtatccaatggaatgaaacacattaataat 27011331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 44 - 185
Target Start/End: Complemental strand, 39439980 - 39439839
Alignment:
Q  44 attccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctc 143  Q
    ||||||||||||||||||||||||    |||||||||||||||| |||||||||||||||||||||||||||||| |||| | |||| |||||||||| |    
T  39439980 attccattgtttggttttgcaaaaaaagaatggaatggaatggagtgtgatggaactcattccatccaataccacccattaaaccaaattttcattcccc 39439881  T
Q  144 ccaaattgggatgtatccaatggaatggaacacattaataat 185  Q
    |||| ||||| ||||||||||||||||||| |||| ||||||    
T  39439880 ccaatttggggtgtatccaatggaatggaatacataaataat 39439839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 42029431 - 42029263
Alignment:
Q  18 aatggaatgggatggaatagagtcagattccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaatacca 117  Q
    ||||||||||  ||| || ||| || ||||||||||||||||||| ||||  |  ||||||||||||||| | ||||||||| |||||||||||||||||    
T  42029431 aatggaatggagtgggatggagccacattccattgtttggttttgtaaaaaagggatggaatggaatggagtatgatggaacccattccatccaatacca 42029332  T
Q  118 ctcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatggaa-cacattaataat 185  Q
    ||||||| | |||||||||||||| ||||| ||||| ||||||||||||||||||| ||||||||||||    
T  42029331 ctcattccttcaatttttcattccacccaatttggggtgtatccaatggaatggaaccacattaataat 42029263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 108 - 223
Target Start/End: Complemental strand, 40024906 - 40024791
Alignment:
Q  108 tccaataccactcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatggaacacattaataatccaattacatttttatccctac 207  Q
    |||||| |||||||||| | |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||   ||||||  ||||||| ||     
T  40024906 tccaatgccactcattccttcaatttttcattcctcccaatttggggtgtatccaatggaatggaacacattaataataatattacaactttatccttag 40024807  T
Q  208 tatttctatttcatta 223  Q
    ||||||| ||||||||    
T  40024806 tatttctgtttcatta 40024791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 91 - 226
Target Start/End: Original strand, 42957259 - 42957393
Alignment:
Q  91 tgatggaactcattccatccaataccactcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatggaacacattaataatccaat 190  Q
    ||||| |||||| ||||||||| |||| ||||||||||||||| |||| ||| |||||||||  | ||||  ||| |||| |||| |||||||||| |||    
T  42957259 tgatgaaactcaatccatccaacaccattcattcatccaatttctcat-cctaccaaattggagtttatcagatgaaatgaaacatattaataatctaat 42957357  T
Q  191 tacatttttatccctactatttctatttcattagcc 226  Q
    ||||||||||||||| || |||||||||||||||||    
T  42957358 tacatttttatccctgctttttctatttcattagcc 42957393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 82 - 240
Target Start/End: Original strand, 44713265 - 44713429
Alignment:
Q  82 aatggaatgtgatggaactcattccatccaa-------taccactcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatggaac 174  Q
    |||||||||||||||||||||||||||||||       ||||||||||| | ||||||||||||||| || || ||||| |||||| |||||||||||||    
T  44713265 aatggaatgtgatggaactcattccatccaaattccaataccactcatttaaccaatttttcattcc-ccaaatttggggtgtatctaatggaatggaac 44713363  T
Q  175 acattaataatccaattacatttttatccctactatttctatttcattagccactcctcattccct 240  Q
    | || ||| ||  ||||||| |||| |||||| | || ||||||||||  ||||||||||||||||    
T  44713364 atatcaattatataattacaattttgtccctatttttcctatttcattttccactcctcattccct 44713429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 169
Target Start/End: Original strand, 14567853 - 14567978
Alignment:
Q  44 attccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctc 143  Q
    |||||||||||||| |||||||||    |||||| |||||||||||   |||||||||||||||||||||||||  ||  | | |||||||||||||| |    
T  14567853 attccattgtttggatttgcaaaaagtgaatggagtggaatggaatacaatggaactcattccatccaataccatccaaaccttcaatttttcattcccc 14567952  T
Q  144 ccaaattgggatgtatccaatggaat 169  Q
    |||| ||||| |||||||||||||||    
T  14567953 ccaatttggggtgtatccaatggaat 14567978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 199
Target Start/End: Original strand, 25909351 - 25909507
Alignment:
Q  44 attccattgtttggttttgcaa-aactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcct 142  Q
    ||||||||||||||||||| || || || ||||||||| |||| ||| | |||||||||||||||||||||||||| || |  |||||||||||||||      
T  25909351 attccattgtttggttttgtaataagtg-aatggaatgaaatgaaatataatggaactcattccatccaataccacccactattccaatttttcattctc 25909449  T
Q  143 cccaaattgggatgtatccaatggaatggaac-acattaataatccaattacattttt 199  Q
    ||||| ||||| ||||| ||||| |||||||| || ||||||||  ||||||| ||||    
T  25909450 cccaatttggggtgtatgcaatgaaatggaacaaccttaataatgtaattacaatttt 25909507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 34 - 208
Target Start/End: Original strand, 23420225 - 23420402
Alignment:
Q  34 atagagtcagattccattgtttggttttgcaaaact--gtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaat 131  Q
    ||||| ||| |||| |||||||||||||| ||||    | ||| ||||||| |||| ||| |||||||||||| |||||||||||||  ||| | |||||    
T  23420225 atagattcacattctattgtttggttttgtaaaaaaaaggaatagaatggagtggagtgtaatggaactcattacatccaataccacctatttaaccaat 23420324  T
Q  132 ttttca-ttcctcccaaattgggatgtatccaatggaatggaacacattaataatccaattacatttttatccctact 208  Q
    ||| || |||||||||   |||| ||||| ||||| |||| |||||||||||||  |||||||| |||| ||||||||    
T  23420325 tttccaattcctcccattgtggggtgtatgcaatgaaatgaaacacattaataacacaattacaattttgtccctact 23420402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 170
Target Start/End: Complemental strand, 49368469 - 49368372
Alignment:
Q  73 atggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatg 170  Q
    ||||||||||||||||||  |||||||  ||||||| | |||||||||| || | |||||| ||||||  ||||| |||||| |||||||||||||||    
T  49368469 atggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattctccccaatttgggaggtatccaatggaatg 49368372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 185
Target Start/End: Complemental strand, 29765340 - 29765198
Alignment:
Q  42 agattccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcc 141  Q
    |||||||||||||||| |||| |||||  |||||||||||||||||   ||||||||   |||||||||||||||||   ||  ||||| |||||||| |    
T  29765340 agattccattgtttggctttgtaaaaca-taatggaatggaatggagcatgatggaatcaattccatccaataccaccattttctccaaattttcattac 29765242  T
Q  142 tcccaaattgggatgtatccaatggaatggaacacattaataat 185  Q
     || || ||||| ||||| ||||||||| |||| ||| ||||||    
T  29765241 cccaaatttggggtgtatgcaatggaatcgaacccataaataat 29765198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 166
Target Start/End: Complemental strand, 2230191 - 2230101
Alignment:
Q  76 gaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcccaaattgggatgtatccaatgg 166  Q
    ||||| |||||||||||||||||| |||| ||||||||||||  ||||||  |||||||||||||  | ||| ||||  ||||||||||||    
T  2230191 gaatgaaatggaatgtgatggaacccattgcatccaataccatccattcactcaatttttcattctcctcaatttggagtgtatccaatgg 2230101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 165
Target Start/End: Original strand, 23466693 - 23466826
Alignment:
Q  34 atagagtcagattccattgtttggttttgcaaaact-gtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatt 132  Q
    ||||| ||| |||| |||||||||||||| ||||   | ||| |||||||||| | ||| |||||||||||| |||||||||||||  ||| | ||||||    
T  23466693 atagattcacattctattgtttggttttgtaaaaaaaggaatagaatggaatgtagtgtaatggaactcattgcatccaataccacctatttaaccaatt 23466792  T
Q  133 tttca-ttcctcccaaattgggatgtatccaatg 165  Q
    || || |||||||||| ||||| ||||| |||||    
T  23466793 ttccagttcctcccaatttggggtgtatgcaatg 23466826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 169
Target Start/End: Complemental strand, 30813419 - 30813293
Alignment:
Q  44 attccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaa-tttttcattcct 142  Q
    |||||||||||| | |||| ||||   ||||||| ||| |||||||   ||||| |||||| |||||||||||||  |  | | ||| |||||||||||     
T  30813419 attccattgtttagatttgtaaaaaattaatggagtgggatggaatacaatggatctcatttcatccaataccaccgaaaccttcaattttttcattccc 30813320  T
Q  143 cccaaattgggatgtatccaatggaat 169  Q
    ||||||||||| |||||||||||||||    
T  30813319 cccaaattggggtgtatccaatggaat 30813293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 2266894 - 2266949
Alignment:
Q  49 attgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcatt 104  Q
    |||||||||||||| ||||  ||| |||||| ||||||||||||||| ||||||||    
T  2266894 attgtttggttttgtaaaaaagtagtggaattgaatggaatgtgatgaaactcatt 2266949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 179
Target Start/End: Complemental strand, 24374292 - 24374193
Alignment:
Q  80 ggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatggaacacatt 179  Q
    |||||||| || ||||| |  |||||||||||||||||| || | | |||||||||||||||  |||| || || |||||| |  |||||||||||||||    
T  24374292 ggaatggagtgggatggtatccattccatccaataccacccacttagccaatttttcattccatccaatttagggtgtatcgagcggaatggaacacatt 24374193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 170
Target Start/End: Original strand, 20983266 - 20983363
Alignment:
Q  73 atggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatg 170  Q
    |||| |||||||||||||  ||| |||  ||||||| | |||||||||| || | |||||| | ||||| ||||| |||||| |||||||||| ||||    
T  20983266 atgggatggaatggaatgcaatgaaaccaattccattctataccactcaatccttcaatttcttattccccccaatttgggaggtatccaatgaaatg 20983363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 40026152 - 40026083
Alignment:
Q  44 attccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaat 113  Q
    ||||||||||||| ||||| ||||    ||| |||||||||||||||||| |||||  ||||||||||||    
T  40026152 attccattgtttgattttgtaaaaaatgaatagaatggaatggaatgtgaaggaacctattccatccaat 40026083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 28199360 - 28199108
Alignment:
Q  18 aatggaatgggatggaatagagtcagattccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaatacca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  28199360 aatggaatgggatggaatagagtcagattccattgtttggttttggaaaattgtaatggaatcgaatggaatgtgatggaacttattccatccaatacca 28199261  T
Q  118 ctcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatggaacacattaataatccaattacatttttatccctactatttctatt 217  Q
    ||||||||| ||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28199260 ctcattcattcaattttccattcctcccaaattggggtgtatccaatgggatggaacacattaataacccaattacatttttatccctactatttctatt 28199161  T
Q  218 tcattagccactcctcattccctgtttcnnnnnnncattgattgtttcttgtt 270  Q
    ||||||||||||||||||||||||||||       ||||||||||||||||||    
T  28199160 tcattagccactcctcattccctgtttcttttttccattgattgtttcttgtt 28199108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 28219001 - 28219169
Alignment:
Q  18 aatggaatgggatggaatagagtcagattccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaatacca 117  Q
    ||||||||||  ||| || ||| || ||||||||||||||||||| ||||  |  ||||||||||||||| ||||||||||| |||||||||||||||||    
T  28219001 aatggaatggagtgggatggagccacattccattgtttggttttgtaaaaaagggatggaatggaatggagtgtgatggaacccattccatccaatacca 28219100  T
Q  118 ctcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatggaa-cacattaataat 185  Q
    ||||||| | |||||||||||||| ||||| ||||| ||||||||||||||||||| ||||||||||||    
T  28219101 ctcattccttcaatttttcattccacccaatttggggtgtatccaatggaatggaaccacattaataat 28219169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 75 - 220
Target Start/End: Original strand, 44246371 - 44246516
Alignment:
Q  75 ggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatggaac 174  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||  |||| ||||| ||||||||||||||||||||    
T  44246371 ggaatggaatggagtgtgatggaactcattccatccaataccactcattctttcaatttttcattccatccaatttggggtgtatccaatggaatggaac 44246470  T
Q  175 acattaataatccaattacatttttatccctactatttctatttca 220  Q
    ||||||||| |   |||||| |||||||||| |  |||||||||||    
T  44246471 acattaatacttttattacaattttatccctgcattttctatttca 44246516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 44 - 190
Target Start/End: Original strand, 10354264 - 10354410
Alignment:
Q  44 attccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctc 143  Q
    |||| |||||||| ||||||||||  | |||||||||||||||| || |||| |||||||||||||||||||||| |||| | |||| |||||||||| |    
T  10354264 attctattgtttgattttgcaaaaaaggaatggaatggaatggagtgcgatgaaactcattccatccaataccacccattaagccaaattttcattcccc 10354363  T
Q  144 ccaaattgggatgtatccaatggaatggaacacattaataatccaat 190  Q
    |||||||  | ||||||||||||||||||| |||| |||||| ||||    
T  10354364 ccaaattaaggtgtatccaatggaatggaatacataaataatacaat 10354410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 72 - 205
Target Start/End: Complemental strand, 1499314 - 1499181
Alignment:
Q  72 aatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatgg 171  Q
    |||||||||||||| | |||||||||| |||||||||||||||||| ||||||| ||||||||| ||| | ||||| ||| | |||||||||||||||||    
T  1499314 aatggaatggaatgcagtgtgatggaattcattccatccaataccaatcattcaaccaattttttatttcccccaatttgaggtgtatccaatggaatgg 1499215  T
Q  172 aacacattaataatccaattacatttttatccct 205  Q
    ||  |||| ||||| |||||||| |||| |||||    
T  1499214 aatgcatttataatacaattacaattttgtccct 1499181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 44 - 204
Target Start/End: Complemental strand, 7444797 - 7444638
Alignment:
Q  44 attccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctc 143  Q
    ||||||||||||||||||  ||||    |||||||||||||||| ||||||||||| ||||||||||||||||||||||| | ||||||||  ||||| |    
T  7444797 attccattgtttggttttctaaaaaatgaatggaatggaatggagtgtgatggaacccattccatccaataccactcatttaaccaattttctattcc-c 7444699  T
Q  144 ccaaattgggatgtatccaatggaatggaacacattaataatccaattacatttttatccc 204  Q
    ||||||||  | |||||| |||||||||||||  ||||||||  |||||||  ||||||||    
T  7444698 ccaaattgaaaggtatccgatggaatggaacattttaataataaaattacaactttatccc 7444638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 76 - 184
Target Start/End: Complemental strand, 18000035 - 17999928
Alignment:
Q  76 gaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatggaaca 175  Q
    |||||||||||| ||||||||||  ||||| ||||||||||||||||| | |||| ||||||| ||| |||| ||||| ||||||| ||||||||||| |    
T  18000035 gaatggaatggagtgtgatggaatccattctatccaataccactcattaagccaaattttcatccct-ccaatttggggtgtatccgatggaatggaata 17999937  T
Q  176 cattaataa 184  Q
    |||||||||    
T  17999936 cattaataa 17999928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 73 - 170
Target Start/End: Complemental strand, 20717690 - 20717593
Alignment:
Q  73 atggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatg 170  Q
    ||||||||||||||||||  |||||||  ||||||| | |||||||||| || | |||||| ||||||| ||||| |||||| |||||||||||||||    
T  20717690 atggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatg 20717593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 35033963 - 35033741
Alignment:
Q  18 aatggaatgggatggaatagagtcagattccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaatacca 117  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35033963 aatggaatgggttggaataaagtcagattccattgtttggttttgcaaaattgtaatggaatggaatggaatgtgatggaactcattccatccaatacca 35033864  T
Q  118 ctcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatggaacacattaataatccaattacatttttatccctactatttctatt 217  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  35033863 ctcattcatccaattttccattcctcccaaattaggatgtatccaatggaatggaacacattaataacccaattacatttttatccctactatttgtatt 35033764  T
Q  218 tcattagccactcctcattccct 240  Q
    |||||||||||||||||||||||    
T  35033763 tcattagccactcctcattccct 35033741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 41810043 - 41809857
Alignment:
Q  18 aatggaatgggatggaatagagtcagattccattgtttggttttgcaaaac-----tgtaatggaatggaatggaatgtgatggaactcattccatccaa 112  Q
    ||||||||||  ||| |||||||||  |||||||||||||||||| ||||      || ||| |||||||||||||||||||||||| ||||||||   |    
T  41810043 aatggaatggagtgggatagagtcatgttccattgtttggttttgtaaaaaaatagtggaattgaatggaatggaatgtgatggaacccattccatgata 41809944  T
Q  113 taccactcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatggaacacattaataatccaattacattttt 199  Q
    |||||||||||||||||||||| |||||| ||||| ||||||||||| |||||||||||||| |||||||||  |||||||| ||||    
T  41809943 taccactcattcatccaattttccattccccccaatttgggatgtattcaatggaatggaacgcattaataagacaattacaatttt 41809857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 45 - 194
Target Start/End: Original strand, 50859177 - 50859326
Alignment:
Q  45 ttccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcc 144  Q
    |||||||||||||||||| ||||    | ||| |||||||||| |||||||||| ||||||||||||||||||| |||| | |||| || ||||||||||    
T  50859177 ttccattgtttggttttgtaaaaaaagagtgggatggaatggagtgtgatggaattcattccatccaataccacccatttagccaaattgtcattcctcc 50859276  T
Q  145 caaattgggatgtatccaatggaatggaacacattaataatccaattaca 194  Q
    ||| ||||| ||||||||||||||||||||||||||||||| ||||||||    
T  50859277 caatttggggtgtatccaatggaatggaacacattaataatacaattaca 50859326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 162 - 245
Target Start/End: Original strand, 13779370 - 13779453
Alignment:
Q  162 aatggaatggaacacattaataatccaattacatttttatccctactatttctatttcattagccactcctcattccctgtttc 245  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13779370 aatggaatggaacacattaataacccaattacatttttatctctactatttctatttcattagccactcctcattccctgtttc 13779453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 34 - 181
Target Start/End: Original strand, 31227697 - 31227843
Alignment:
Q  34 atagagtcagattccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaattt 133  Q
    ||||||||| ||| || |||||||||||| ||||    |||||||||||||| | |||||||||| |||||||||||||||||||||||| | |||||||    
T  31227697 atagagtcatatttcaatgtttggttttgtaaaaaatgaatggaatggaatgaagtgtgatggaaatcattccatccaataccactcatttaaccaattt 31227796  T
Q  134 ttcattcctcccaaattgggatgtatccaatggaatggaacacattaa 181  Q
    |||||||| ||||||||||  ||||||||||||||||||| |||||||    
T  31227797 ttcattcc-cccaaattggagtgtatccaatggaatggaatacattaa 31227843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 46944030 - 46944205
Alignment:
Q  19 atggaatgggatggaatagagtcagattccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccac 118  Q
    ||||||||| |||| |||||   | |||||||||||||||| || ||||    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  46944030 atggaatggaatgggatagatcaacattccattgtttggttatgtaaaaaatgaatggaatggaatggagtgtgatggaactcattccatccaataccac 46944129  T
Q  119 tcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatggaacacattaataatccaattaca 194  Q
    |||||    ||||||| |||||| ||||| ||||| |||||||||||||||| | ||||||||||||  |||||||    
T  46944130 tcattttgtcaattttccattccacccaatttggggtgtatccaatggaatgtagcacattaataatataattaca 46944205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 44 - 208
Target Start/End: Complemental strand, 4292760 - 4292599
Alignment:
Q  44 attccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctc 143  Q
    ||||||||||||||||||||||||  |||||||||||||||||  |||||||||||||||||||||||||||||||  || | | | |||| |||||| |    
T  4292760 attccattgtttggttttgcaaaaaagtaatggaatggaatggtgtgtgatggaactcattccatccaataccactattttaactagttttccattcccc 4292661  T
Q  144 ccaaattgggatgtatccaatggaatggaacacattaataatccaattacatttttatccctact 208  Q
     ||| ||||   ||||||||||||||  |||||||||||||| |||||||| |||| ||||||||    
T  4292660 tcaatttgg---gtatccaatggaatataacacattaataatacaattacaattttgtccctact 4292599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 44 - 185
Target Start/End: Original strand, 22405045 - 22405187
Alignment:
Q  44 attccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctc 143  Q
    ||||||||||||||||||| ||||     ||||||||||||||| ||||||||||||||||||||||||||||| |||||| | ||||||| |||||| |    
T  22405045 attccattgtttggttttgtaaaaaaaggatggaatggaatggagtgtgatggaactcattccatccaataccaatcattccttcaattttccattccac 22405144  T
Q  144 ccaaattgggatgtatccaatggaatggaa-cacattaataat 185  Q
    |||| ||||  ||||||||||||||||||| ||||||||||||    
T  22405145 ccaatttggagtgtatccaatggaatggaaccacattaataat 22405187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 44 - 190
Target Start/End: Original strand, 35292054 - 35292200
Alignment:
Q  44 attccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctc 143  Q
    ||||||||||||||||||||||||  | |||||||||||||||| ||||||| ||||||||| |||||||||||| |||| | |||| |||||||| |      
T  35292054 attccattgtttggttttgcaaaaaaggaatggaatggaatggagtgtgatgtaactcattcaatccaataccacccattaagccaaattttcatttcct 35292153  T
Q  144 ccaaattgggatgtatccaatggaatggaacacattaataatccaat 190  Q
    |||| ||||| ||||||||||||||||||| |||| |||||| ||||    
T  35292154 ccaatttggggtgtatccaatggaatggaatacataaataatacaat 35292200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 21263729 - 21263561
Alignment:
Q  18 aatggaatgggatggaatagagtcagattccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaatacca 117  Q
    ||||||||||  ||| || ||| || ||||||||||||||||||| ||||  |  ||||||||| ||||| ||||||||||| |||||||||||||||||    
T  21263729 aatggaatggagtgggatggagccacattccattgtttggttttgtaaaaaagggatggaatgggatggagtgtgatggaacccattccatccaatacca 21263630  T
Q  118 ctcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatggaa-cacattaataat 185  Q
    ||||||| | ||||||| ||||||  |||| ||||| |||||| ||||||||| || ||||||||||||    
T  21263629 ctcattccttcaattttccattccatccaatttggggtgtatcgaatggaatgaaaccacattaataat 21263561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 47 - 194
Target Start/End: Complemental strand, 41223779 - 41223631
Alignment:
Q  47 ccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaa-taccactcattcatccaatttttcattcctccc 145  Q
    ||||||||||||| || ||||    |||||||||||||||| ||||||||||| |||||||||||| ||||||||||| |  || ||||||||||| |||    
T  41223779 ccattgtttggttatgtaaaaaatgaatggaatggaatggagtgtgatggaacccattccatccaaataccactcatttagtcattttttcattcccccc 41223680  T
Q  146 aaattgggatgtatccaatggaatggaacacattaataatccaattaca 194  Q
    ||||||||| |||||||||||||||||||||  |||||||  |||||||    
T  41223679 aaattgggaggtatccaatggaatggaacactctaataataaaattaca 41223631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 13779316 - 13779381
Alignment:
Q  18 aatggaatgggatggaatagagtcagattccattgtttggttttgcaaaactgtaatggaatggaa 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13779316 aatggaatgggatggaatagagtcagattccattgtttggttttgcaaaaatgtaatggaatggaa 13779381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 185
Target Start/End: Original strand, 48084723 - 48084832
Alignment:
Q  76 gaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatggaaca 175  Q
    |||||||||||| | | |||||||||||| |||||||||||||||||| | ||||||||||||||| ||||| |||||| |||| | ||||||||||| |    
T  48084723 gaatggaatggagtcttatggaactcatttcatccaataccactcatttaaccaatttttcattccccccaatttgggaggtatacgatggaatggaata 48084822  T
Q  176 cattaataat 185  Q
    || |||||||    
T  48084823 caataataat 48084832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 3121237 - 3121310
Alignment:
Q  44 attccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaatacca 117  Q
    ||||||||||||||||||||||||    |||||||||||||||| |||||||||||||||||||||||||||||    
T  3121237 attccattgtttggttttgcaaaaaaagaatggaatggaatggagtgtgatggaactcattccatccaatacca 3121310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 169
Target Start/End: Complemental strand, 26861479 - 26861354
Alignment:
Q  44 attccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctc 143  Q
    |||||||||||||| |||||||||    |||||| ||| |||||||   |||||||||||||||||||||||||| ||  | | ||||||||||||||      
T  26861479 attccattgtttggatttgcaaaaagtgaatggagtgggatggaatacaatggaactcattccatccaataccacccaaaccttcaatttttcattccct 26861380  T
Q  144 ccaaattgggatgtatccaatggaat 169  Q
    |||||||||| |||||||||||||||    
T  26861379 ccaaattggggtgtatccaatggaat 26861354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 4342168 - 4342109
Alignment:
Q  24 atgggatggaatagagtcagattccattgtttggttttgcaaaactgtaatggaatggaa 83  Q
    |||| ||||||| |||||| ||||||||||||||||||| ||||  ||||||||||||||    
T  4342168 atggaatggaatggagtcaaattccattgtttggttttgtaaaaaagtaatggaatggaa 4342109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 55841403 - 55841522
Alignment:
Q  81 gaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatggaac-acatt 179  Q
    ||||||||| | |||||| ||||||||||||||| ||  || || || |||||||||||||| |||| ||||  ||||| ||| |||||| ||| ||| |    
T  55841403 gaatggaatataatggaattcattccatccaatatcatccactcttctaatttttcattccttccaatttggagtgtatgcaaaggaatgaaacaacaat 55841502  T
Q  180 aataatccaattacattttt 199  Q
    |||||| |||||||| ||||    
T  55841503 aataatgcaattacaatttt 55841522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 55777223 - 55777342
Alignment:
Q  81 gaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatggaac-acatt 179  Q
    ||||||||| | |||||| ||||||||||||||| ||  || || || |||||||||||||| |||| ||||  ||||| ||| |||||  ||| ||| |    
T  55777223 gaatggaatataatggaattcattccatccaatatcatccactcttctaatttttcattccttccaatttggagtgtatgcaaaggaatcaaacaacaat 55777322  T
Q  180 aataatccaattacattttt 199  Q
    |||||| |||||||| ||||    
T  55777323 aataatgcaattacaatttt 55777342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 19625400 - 19625627
Alignment:
Q  18 aatggaatgggatggaatagagtcagattccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaatacca 117  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  19625400 aatggaatgggatggaatagagtcagatttcattgtttggttttgcaaaaatgtaatggaatggaatggaatgtgatggaactaattccatccaatacca 19625499  T
Q  118 ctcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatggaacacattaataatccaattacatttttatccctactatttctatt 217  Q
    ||||||||||||||||| |||||||||||||||| | |||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  19625500 ctcattcatccaattttccattcctcccaaattgtggtgtatccaatgggatggaacacattaataaccgaattacatttttatccctactatttctatt 19625599  T
Q  218 tcattagccactcctcattccctgtttc 245  Q
    ||||||||||||||||||||| ||||||    
T  19625600 tcattagccactcctcattccgtgtttc 19625627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 45 - 220
Target Start/End: Complemental strand, 23417335 - 23417160
Alignment:
Q  45 ttccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcc 144  Q
    |||||||||||||||||| ||||  | |||||||||| ||||| | ||||||||| |||||||||||||||||||||||| ||||||||||||||||  |    
T  23417335 ttccattgtttggttttgtaaaaaaggaatggaatggcatggagtatgatggaacccattccatccaataccactcattcttccaatttttcattccatc 23417236  T
Q  145 caaattgggatgtatccaatggaatggaacacattaataatccaattacatttttatccctactatttctatttca 220  Q
    ||| ||||| |||||||||||||||||||||||||||||||   |||||| |||||||||| |  |||||||||||    
T  23417235 caatttggggtgtatccaatggaatggaacacattaataattttattacaattttatccctgcattttctatttca 23417160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 93 - 221
Target Start/End: Original strand, 35759791 - 35759919
Alignment:
Q  93 atggaactcattccatccaataccactcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatggaacacattaataatccaatta 192  Q
    ||||| |||||||||||||||||||||||||||| |||||||| || ||||||||| |||| ||||| ||||||||||||||||||||||||| ||||||    
T  35759791 atggacctcattccatccaataccactcattcattcaatttttaatccctcccaaactggggtgtatgcaatggaatggaacacattaataattcaatta 35759890  T
Q  193 catttttatccctactatttctatttcat 221  Q
    || ||||||||| ||| ||||||||||||    
T  35759891 caattttatcccaactttttctatttcat 35759919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 12633403 - 12633615
Alignment:
Q  19 atggaatgggatggaatagagtcagattccattgtttggttttgcaaa-----actgtaatggaatggaatggaatgtgatggaactcattccatc---c 110  Q
    |||||||||  ||| |||| | || ||||||||||||||||||| |||     | || ||||||||||| |||| |||||||||||||||||||||   |    
T  12633403 atggaatggtgtgggatagggccacattccattgtttggttttgtaaacaaataatggaatggaatggagtggagtgtgatggaactcattccatcgacc 12633502  T
Q  111 aataccactcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatggaacacattaataatccaattacatttttatccctactat 210  Q
    ||||||||||||| | |||||||| ||||||||||||||| || |||||||||||||||| || ||||||||||| |||||||| ||||  ||||| | |    
T  12633503 aataccactcatttagccaattttccattcctcccaaattagggtgtatccaatggaatgaaatacattaataatacaattacaattttgaccctatttt 12633602  T
Q  211 ttctatttcatta 223  Q
    |||||||||||||    
T  12633603 ttctatttcatta 12633615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 202
Target Start/End: Complemental strand, 5925250 - 5925093
Alignment:
Q  45 ttccattgtttggttttgcaaaactgta-atggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctc 143  Q
    |||||||||||||||||| ||||  ||| |||| ||||||| |||| ||||||||  |||||||||||||| || ||||||| |   |||||||||||||    
T  5925250 ttccattgtttggttttgtaaaaa-gtatatggtatggaatagaatatgatggaatccattccatccaatatcattcattcaccagctttttcattcctc 5925152  T
Q  144 ccaaattgggatgtatccaatggaatggaacacattaataatccaattacatttttatc 202  Q
    |||||||||||||||| |||||||||| ||  ||||| |||| |||||||||| |||||    
T  5925151 ccaaattgggatgtatgcaatggaatgaaaggcattactaattcaattacattcttatc 5925093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 73 - 206
Target Start/End: Complemental strand, 261840 - 261707
Alignment:
Q  73 atggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatgga 172  Q
    |||||||||||||| |||||||||||  ||||||||| ||||| ||||||| |  ||||||| |||||| | ||| ||||| ||||||||||| ||||||    
T  261840 atggaatggaatgggatgtgatggaatccattccatcaaatacaactcatttactcaattttccattcccctcaatttggggtgtatccaatgaaatgga 261741  T
Q  173 acacattaataatccaattacatttttatcccta 206  Q
    ||||||||||||  |||||||| |||| ||||||    
T  261740 acacattaataacacaattacaattttgtcccta 261707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 221
Target Start/End: Complemental strand, 36657694 - 36657545
Alignment:
Q  72 aatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatgg 171  Q
    ||||||||| || | | ||||||||||| ||||||||||||||||| ||||| | |||  |||||| ||| ||||| ||||| ||||||||||||||| |    
T  36657694 aatggaatgaaaagaagtgtgatggaacccattccatccaataccattcatttaaccagattttcaatccacccaatttggggtgtatccaatggaatcg 36657595  T
Q  172 aacacattaataatccaattacatttttatccctactatttctatttcat 221  Q
    || | |||  |||| |||| ||| ||||  ||||||  ||||||||||||    
T  36657594 aaaatattgttaatacaatcacaattttgcccctaccttttctatttcat 36657545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 170
Target Start/End: Original strand, 29428919 - 29429044
Alignment:
Q  45 ttccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcc 144  Q
    ||||||||||||| |||| ||||    |||||||||||||| ||  ||||||||  |||||||||| ||| |||||  || |||||||| |||||||  |    
T  29428919 ttccattgtttggatttgtaaaaaatgaatggaatggaatgaaacatgatggaatccattccatcccatagcactctctcttccaatttatcattccctc 29429018  T
Q  145 caaattgggatgtatccaatggaatg 170  Q
    ||| ||||| ||||| ||||||||||    
T  29429019 caatttggggtgtatgcaatggaatg 29429044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 45 - 220
Target Start/End: Complemental strand, 38687 - 38517
Alignment:
Q  45 ttccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcc 144  Q
    |||||||||||||||||| ||||     | ||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||       
T  38687 ttccattgtttggttttgtaaaa-----aaggaatggaatggagtgtgatggaacccattccatccaataccactcattcttccaatttttcattccatt 38593  T
Q  145 caaattgggatgtatccaatggaatggaacacattaataatccaattacatttttatccctactatttctatttca 220  Q
    ||| |||||||||||||||||||||||||||||||||||||   |||||| ||||||||||||  |||||||||||    
T  38592 caatttgggatgtatccaatggaatggaacacattaataattttattacaattttatccctacattttctatttca 38517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 45 - 199
Target Start/End: Complemental strand, 30257 - 30103
Alignment:
Q  45 ttccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcc 144  Q
    |||||||||||||||||| ||||   ||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||| |||||| ||    
T  30257 ttccattgtttggttttgtaaaaaaataatggaatggaatggaatgtgatggaacccattccatcatataccactcattcatccaattttccattccccc 30158  T
Q  145 caaattgggatgtatccaatggaatggaacacattaataatccaattacattttt 199  Q
    ||| ||||| ||||||||||| ||||||||||||||||||  |||||||| ||||    
T  30157 caatttggggtgtatccaatgaaatggaacacattaataagacaattacaatttt 30103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 45 - 199
Target Start/End: Original strand, 41404078 - 41404232
Alignment:
Q  45 ttccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcc 144  Q
    |||||||||||||||||| ||||   ||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||| |||||| ||    
T  41404078 ttccattgtttggttttgtaaaaaaataatggaatggaatggaatgtgatggaacccattccatcatataccactcattcatccaattttccattccccc 41404177  T
Q  145 caaattgggatgtatccaatggaatggaacacattaataatccaattacattttt 199  Q
    ||| ||||| ||||||||||| ||||||||||||||||||  |||||||| ||||    
T  41404178 caatttggggtgtatccaatgaaatggaacacattaataagacaattacaatttt 41404232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 72 - 220
Target Start/End: Original strand, 42365919 - 42366067
Alignment:
Q  72 aatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatgg 171  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||| |||||| ||||||||||||||||  | || ||||| |||||||||||||||||    
T  42365919 aatggaatggaatggagtgtgatggaacccattccatccaataccattcattcttccaatttttcattccatctaatttggggtgtatccaatggaatgg 42366018  T
Q  172 aacacattaataatccaattacatttttatccctactatttctatttca 220  Q
    ||||||||||||||   |||||| |||||||||| |  |||||||||||    
T  42366019 aacacattaataattttattacaattttatccctgcattttctatttca 42366067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 44 - 182
Target Start/End: Original strand, 15581575 - 15581713
Alignment:
Q  44 attccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctc 143  Q
    ||||||||||||||||||| ||||  | |||||||||||||||| ||||||||||| |||||||||||||||||  |||||  |||||||| |||||| |    
T  15581575 attccattgtttggttttgtaaaaaagaaatggaatggaatggagtgtgatggaacccattccatccaataccatccattctcccaattttccattcccc 15581674  T
Q  144 ccaaattgggatgtatccaatggaatggaacacattaat 182  Q
    |||| ||||| ||||||||||||||||||||||| ||||    
T  15581675 ccaatttggggtgtatccaatggaatggaacacaataat 15581713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 72 - 190
Target Start/End: Original strand, 48046435 - 48046553
Alignment:
Q  72 aatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatgg 171  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||| | |||| |||||||||| || || ||||| |||||||||||||||||    
T  48046435 aatggaatggaatggagtgtgatggaactcattccatccaataccacccattaagccaaattttcattccccctaatttggggtgtatccaatggaatgg 48046534  T
Q  172 aacacattaataatccaat 190  Q
    || |||| |||||| ||||    
T  48046535 aatacataaataatacaat 48046553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 71 - 185
Target Start/End: Original strand, 42934255 - 42934369
Alignment:
Q  71 taatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatg 170  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||||| | ||||||| ||||||  |||| ||| | |||||||||| |||||    
T  42934255 taatggaatggaatggagtgtgatggaacccattccatccaataccactcattccttcaattttccattccatccaatttgaggtgtatccaatagaatg 42934354  T
Q  171 gaacacattaataat 185  Q
    |||||||| ||||||    
T  42934355 gaacacatcaataat 42934369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 45 - 133
Target Start/End: Complemental strand, 50678254 - 50678166
Alignment:
Q  45 ttccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaattt 133  Q
    |||||||||||||||||| ||||  | |||||||||||||||| ||||||||||| ||||| |||||||||||||||||| ||||||||    
T  50678254 ttccattgtttggttttgtaaaaaaggaatggaatggaatggagtgtgatggaacccattctatccaataccactcattcttccaattt 50678166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 185
Target Start/End: Original strand, 34969816 - 34969924
Alignment:
Q  76 gaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatggaaca 175  Q
    |||||||||| | ||||||||||| ||||||||||||||||||||||| |  ||| ||||||||||| |||| ||||| |||||| |||||||| ||| |    
T  34969816 gaatggaatgaagtgtgatggaacccattccatccaataccactcattaagtcaaattttcattcct-ccaatttggggtgtatcaaatggaatagaata 34969914  T
Q  176 cattaataat 185  Q
    ||||||||||    
T  34969915 cattaataat 34969924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 169
Target Start/End: Complemental strand, 42117270 - 42117145
Alignment:
Q  44 attccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctc 143  Q
    |||||||||||||| |||||||||    |||||| ||| |||||||   |||||||||||||||||||||||||| ||  | | ||||||||||||||      
T  42117270 attccattgtttggatttgcaaaaagtgaatggagtgggatggaatacaatggaactcattccatccaataccacccaaaccttcaatttttcattccct 42117171  T
Q  144 ccaaattgggatgtatccaatggaat 169  Q
    |||||||||| |||||||||||||||    
T  42117170 ccaaattggggtgtatccaatggaat 42117145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 156
Target Start/End: Complemental strand, 16302827 - 16302715
Alignment:
Q  44 attccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctc 143  Q
    ||||||||||||||||||| ||||  | |||||||||||||||| |||||||||||||||||||||||||  ||  |||| ||| | ||||||||||| |    
T  16302827 attccattgtttggttttgtaaaaaaggaatggaatggaatggagtgtgatggaactcattccatccaatgtcatccatttatcaattttttcattcccc 16302728  T
Q  144 ccaaattgggatg 156  Q
    |||| || |||||    
T  16302727 ccaatttaggatg 16302715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 39793621 - 39793736
Alignment:
Q  79 tggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatggaacacat 178  Q
    ||||||| | ||| |||||| |||||||||||||||  ||||||| |  ||||||||||||||| | || || || ||||||||||| ||||||||||||    
T  39793621 tggaatgaagtgtaatggaagtcattccatccaataaaactcatttagtcaatttttcattccttctaatttagggtgtatccaatgaaatggaacacat 39793720  T
Q  179 taataatccaattaca 194  Q
    ||||||| ||||||||    
T  39793721 taataatacaattaca 39793736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 177
Target Start/End: Complemental strand, 19551318 - 19551166
Alignment:
Q  24 atgggatggaatagagtcagattccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcatt 123  Q
    |||| ||||||| ||||  |||||||| ||||||||||| ||||  ||||||||||| ||| |||  |||||||||||||||||||||||||||| |  |    
T  19551318 atggaatggaatggagtgggattccatcgtttggttttgtaaaaaagtaatggaatgaaatagaacatgatggaactcattccatccaataccaccctct 19551219  T
Q  124 catccaatttttcattcctcccaaattgggatgtatccaatggaatggaacaca 177  Q
    | | | |||||||||||| || || ||||| ||||  |||||||||| ||||||    
T  19551218 ccttctatttttcattcc-ccgaatttggggtgtaagcaatggaatgtaacaca 19551166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 169
Target Start/End: Original strand, 49741324 - 49741449
Alignment:
Q  44 attccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctc 143  Q
    |||||||||||||| |||||||||    |||||| ||| |||||||   |||||||||||||||||||||||||| ||  | | ||||||||||||||      
T  49741324 attccattgtttggatttgcaaaaagcgaatggagtgggatggaatacaatggaactcattccatccaataccacccaaaccttcaatttttcattccct 49741423  T
Q  144 ccaaattgggatgtatccaatggaat 169  Q
     ||||||||| |||||||||||||||    
T  49741424 tcaaattggggtgtatccaatggaat 49741449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 50139682 - 50139554
Alignment:
Q  44 attccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctc 143  Q
    ||||| |||||||| |||| |||| | ||||||| |||||||||||  |||||||  |||||||||| |||||||   ||| ||  |||||| |||||      
T  50139682 attccgttgtttggatttgtaaaattttaatggagtggaatggaataagatggaatccattccatcctataccaccacttcctcttattttttattccat 50139583  T
Q  144 ccaaattgggatgtatccaatggaatgga 172  Q
    |||| ||||||||||| ||||||||||||    
T  50139582 ccaatttgggatgtatgcaatggaatgga 50139554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 49764907 - 49764985
Alignment:
Q  45 ttccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcatt 123  Q
    |||||||||||| ||||||||||    ||| | |||||||||| | |||||||||||||| ||||||||||||||||||    
T  49764907 ttccattgtttgattttgcaaaaaatgaataggatggaatggagtatgatggaactcatttcatccaataccactcatt 49764985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 50678161 - 50678096
Alignment:
Q  155 tgtatccaatggaatggaacacattaataatccaattacatttttatccctactatttctatttca 220  Q
    |||||||||||||||||||||||||||||||   |||||| |||||||||| |  |||||||||||    
T  50678161 tgtatccaatggaatggaacacattaataattttattacaattttatccctgcattttctatttca 50678096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 7521240 - 7521303
Alignment:
Q  155 tgtatccaatggaatggaacacattaataatccaattacatttttatccctactatttctattt 218  Q
    ||||| ||||||||||||||||||||||||  |||||||| |||| |||||| | |||||||||    
T  7521240 tgtattcaatggaatggaacacattaataacacaattacaattttgtccctattttttctattt 7521303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 170
Target Start/End: Complemental strand, 30190898 - 30190811
Alignment:
Q  83 atggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatg 170  Q
    ||||||||  |||||||  ||||||| | |||||||||| || | |||||| ||||||| ||||| |||||| |||||||||||||||    
T  30190898 atggaatggaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatg 30190811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 7741115 - 7741186
Alignment:
Q  45 ttccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaatacc 116  Q
    ||||||||||| |||||| ||||    ||||||||||||| || ||||||||||| |||||| |||||||||    
T  7741115 ttccattgtttagttttgtaaaaaataaatggaatggaatagagtgtgatggaacccattccttccaatacc 7741186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 31991732 - 31991631
Alignment:
Q  72 aatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatgg 171  Q
    |||||||||||||||||    ||||||   ||||||| | ||||||||||||| | |||||  ||||||| ||||| |||||  ||||||||||||||||    
T  31991732 aatggaatggaatggaacacaatggaatcaattccattctataccactcattccttcaattcctcattccccccaatttggg-ggtatccaatggaatgg 31991634  T
Q  172 aac 174  Q
    |||    
T  31991633 aac 31991631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 23473768 - 23473841
Alignment:
Q  44 attccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaatacca 117  Q
    |||||||||||||| | || |||| |  |||||||||||||||||  ||||||||  |||||||||| ||||||    
T  23473768 attccattgtttggatgtgtaaaaattgaatggaatggaatggaacatgatggaatccattccatcccatacca 23473841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 173
Target Start/End: Original strand, 7910900 - 7911000
Alignment:
Q  73 atggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatgga 172  Q
    ||||||||| ||||||  ||||||||  |||||||||| |||| || | || |  | ||||||||||||| |||||||||   |||| ||||||||||||    
T  7910900 atggaatggcatggaacatgatggaatgcattccatcccatacaacccttttactctatttttcattccttccaaattggagggtatgcaatggaatgga 7910999  T
Q  173 a 173  Q
    |    
T  7911000 a 7911000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 35306793 - 35306749
Alignment:
Q  130 atttttcattcctcccaaattgggatgtatccaatggaatggaac 174  Q
    |||||||||||| ||||| |||||| |||| ||||||||||||||    
T  35306793 atttttcattccccccaatttgggaggtatgcaatggaatggaac 35306749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 44265 - 44089
Alignment:
Q  18 aatggaatgggatggaatagagtcagattccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaatacca 117  Q
    ||||||||||  ||| |||||  || ||||||||||||||||||| ||||    |||||||||||||||| ||||||||||| |||||||||||||||||    
T  44265 aatggaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggagtgtgatggaacccattccatccaatacca 44166  T
Q  118 ctcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatggaacacattaataatccaattaca 194  Q
    | |||| | |||||||| |||||| ||||| ||| | |||  ||||||||||| |||||||||||||  ||||||||    
T  44165 cccatttaaccaattttccattccccccaatttgaggtgttcccaatggaatgaaacacattaataagacaattaca 44089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 77986 - 77810
Alignment:
Q  18 aatggaatgggatggaatagagtcagattccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaatacca 117  Q
    ||||||||||  ||| |||||  || ||||||||||||||||||| ||||    |||||||||||||||| ||||||||||| |||||||||||||||||    
T  77986 aatggaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggagtgtgatggaacccattccatccaatacca 77887  T
Q  118 ctcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatggaacacattaataatccaattaca 194  Q
    | |||| | |||||||| |||||| ||||| ||| | |||  ||||||||||| |||||||||||||  ||||||||    
T  77886 cccatttaaccaattttccattccccccaatttgaggtgttcccaatggaatgaaacacattaataagacaattaca 77810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 47 - 194
Target Start/End: Original strand, 56928 - 57075
Alignment:
Q  47 ccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctccca 146  Q
    ||||||||||||| || ||||    ||||||||||||| || |||||||||||  |||||||||||||||||||||| |  || ||||||||||| ||||    
T  56928 ccattgtttggttatgtaaaaaatgaatggaatggaatagagtgtgatggaaccaattccatccaataccactcatttagtcattttttcattcccccca 57027  T
Q  147 aattgggatgtatccaatggaatggaacacattaataatccaattaca 194  Q
    |||||||| |||||||||||||||||||||  |||||||  |||||||    
T  57028 aattgggaggtatccaatggaatggaacactctaataataaaattaca 57075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 71 - 185
Target Start/End: Complemental strand, 12516 - 12402
Alignment:
Q  71 taatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatg 170  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||||| | ||||||| ||||||  |||| ||| | |||||||||| |||||    
T  12516 taatggaatggaatggagtgtgatggaacccattccatccaataccactcattccttcaattttccattccatccaatttgaggtgtatccaatagaatg 12417  T
Q  171 gaacacattaataat 185  Q
    |||||||| ||||||    
T  12416 gaacacatcaataat 12402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 47 - 194
Target Start/End: Complemental strand, 34924859 - 34924711
Alignment:
Q  47 ccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaa-taccactcattcatccaatttttcattcctccc 145  Q
    ||||||||||||| || ||||    |||||||||||||||| ||||||||||| |||||||||||| ||||||||||| |  || ||||||||||| |||    
T  34924859 ccattgtttggttatgtaaaaaatgaatggaatggaatggagtgtgatggaacccattccatccaaataccactcatttagtcattttttcattcccccc 34924760  T
Q  146 aaattgggatgtatccaatggaatggaacacattaataatccaattaca 194  Q
    ||||||||| ||||| |||||||||||||||  |||||||  |||||||    
T  34924759 aaattgggaggtatctaatggaatggaacactctaataataaaattaca 34924711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 183
Target Start/End: Original strand, 38679751 - 38679888
Alignment:
Q  45 ttccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcc 144  Q
    |||||||||||||||||| ||||    ||| |||||||||||| |||||||||||||||||||| |||||| ||||||| | |||| |||||||||| ||    
T  38679751 ttccattgtttggttttgtaaaaaatgaatagaatggaatggagtgtgatggaactcattccattcaatactactcattaagccaaattttcattcc-cc 38679849  T
Q  145 caaattgggatgtatccaatggaatggaacacattaata 183  Q
     || ||||| |||||||||| |||||||| |||||||||    
T  38679850 aaatttggggtgtatccaattgaatggaatacattaata 38679888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 220
Target Start/End: Complemental strand, 28873829 - 28873655
Alignment:
Q  49 attgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccac---tcattcatccaa-tttttcattcctcc 144  Q
    |||||||||||||| ||||  | |||| ||||||||||  |||||||||||  |||||||||||||||||   || ||||||||| ||||| |||||  |    
T  28873829 attgtttggttttgtaaaaaaggaatgaaatggaatggtgtgtgatggaacctattccatccaataccaccactctttcatccaaattttttattccctc 28873730  T
Q  145 caaattgggatgtatccaatggaatggaacacattaataatccaattacatttttatccctactatttctatttca 220  Q
    ||| ||  | |||||  ||||||||||||||||||||||||||||||||| ||||||  ||||| |||||||||||    
T  28873729 caatttaaggtgtatttaatggaatggaacacattaataatccaattacaattttatttctact-tttctatttca 28873655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 194
Target Start/End: Complemental strand, 42025470 - 42025316
Alignment:
Q  44 attccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcatt----catccaatttttcatt 139  Q
    ||||||||||||||||||| ||||    |||||||| ||||||| ||||||||||| |||||||||||||||||||||||    || || |||||| |||    
T  42025470 attccattgtttggttttgtaaaaaatgaatggaattgaatggagtgtgatggaacccattccatccaataccactcatttagccaacccattttttatt 42025371  T
Q  140 cctcccaaattgggatgtatccaatggaatggaacacattaataatccaattaca 194  Q
    || |||||||||| | |||||| ||||||| |||||  ||||||||  |||||||    
T  42025370 ccccccaaattggaaggtatccgatggaattgaacattttaataataaaattaca 42025316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 72 - 194
Target Start/End: Complemental strand, 14112430 - 14112307
Alignment:
Q  72 aatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctccc-aaattgggatgtatccaatggaatg 170  Q
    ||||||||||||| || |||||||||||  |||||||||||||||||||||| |  || ||||||||||| ||| |||| |||| |||||||||||||||    
T  14112430 aatggaatggaatagagtgtgatggaaccgattccatccaataccactcatttagtcattttttcattcccccctaaatggggaggtatccaatggaatg 14112331  T
Q  171 gaacacattaataatccaattaca 194  Q
    ||||||  |||||||  |||||||    
T  14112330 gaacactctaataataaaattaca 14112307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 169
Target Start/End: Original strand, 11354777 - 11354902
Alignment:
Q  44 attccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctc 143  Q
    |||||||||||||| |||||||||    |||||| ||| |||||||   |||||||| ||||||||||||||||| ||  | | |||||||| |||||      
T  11354777 attccattgtttggatttgcaaaaagtgaatggagtgggatggaatacaatggaactgattccatccaataccacccaaaccttcaattttttattccct 11354876  T
Q  144 ccaaattgggatgtatccaatggaat 169  Q
    |||||||||| |||||||||||||||    
T  11354877 ccaaattggggtgtatccaatggaat 11354902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 73 - 170
Target Start/End: Complemental strand, 22531390 - 22531293
Alignment:
Q  73 atggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatg 170  Q
    ||||||||||||||||||  |||||||  ||||||| | |||||||||| || | |||||| ||||||| ||||| |||||| |||||||||||||||    
T  22531390 atggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatg 22531293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 73 - 170
Target Start/End: Complemental strand, 22536075 - 22535978
Alignment:
Q  73 atggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatg 170  Q
    ||||||||||||||||||  |||||||  ||||||| | |||||||||| || | |||||| ||||||| ||||| |||||| |||||||||||||||    
T  22536075 atggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatg 22535978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 73 - 170
Target Start/End: Complemental strand, 25993996 - 25993899
Alignment:
Q  73 atggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatg 170  Q
    ||||||||||||||||||  |||||||  ||||||| | |||||||||| || | |||||| ||||||| ||||| |||||| |||||||||||||||    
T  25993996 atggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatg 25993899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 172
Target Start/End: Original strand, 29844247 - 29844375
Alignment:
Q  44 attccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctc 143  Q
    |||||||||||||| |||| |||| | ||||||| || |||||||| ||||||||  |||||||||| |||||||   ||| ||  |||||||||||       
T  29844247 attccattgtttggatttgtaaaattttaatggagtgaaatggaatatgatggaatccattccatcctataccaccacttcctcttatttttcattctat 29844346  T
Q  144 ccaaattgggatgtatccaatggaatgga 172  Q
    |||| |||||| |||| ||||||||||||    
T  29844347 ccaatttgggaggtatgcaatggaatgga 29844375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 185
Target Start/End: Original strand, 30800191 - 30800332
Alignment:
Q  44 attccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctc 143  Q
    |||| ||||||| |||||| ||||  | | ||||||| ||| || ||||||||||||||||||||||||||||| ||||| |     |||| ||||| ||    
T  30800191 attctattgtttagttttgtaaaaaaggagtggaatgaaatagagtgtgatggaactcattccatccaataccattcatttaaatttttttccattcttc 30800290  T
Q  144 ccaaattgggatgtatccaatggaatggaacacattaataat 185  Q
    | || | ||| ||||| |||| |||| |||||||||||||||    
T  30800291 ctaattcggggtgtattcaatagaatagaacacattaataat 30800332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 194
Target Start/End: Complemental strand, 5358320 - 5358200
Alignment:
Q  74 tggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatggaa 173  Q
    |||||| ||||| |||||||||||||  ||| |||||||||||||||||  ||| | ||||||||||     || ||| | ||||| |||||||||||||    
T  5358320 tggaatagaatgaaatgtgatggaacaaatttcatccaataccactcatatatctattttttcattctctataatttgaggtgtatgcaatggaatggaa 5358221  T
Q  174 cacattaataatccaattaca 194  Q
     ||| |||||||  |||||||    
T  5358220 tacaataataatataattaca 5358200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 44 - 134
Target Start/End: Complemental strand, 311 - 221
Alignment:
Q  44 attccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttt 134  Q
    ||||||||||||||||||| |||| ||  ||||||||||||||| ||||||||||| |||||||||||||||||||||||| | |||||||    
T  311 attccattgtttggttttgtaaaaatgggatggaatggaatggagtgtgatggaacccattccatccaataccactcattccttcaatttt 221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 175
Target Start/End: Original strand, 10871263 - 10871364
Alignment:
Q  74 tggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatggaa 173  Q
    ||||||| |||||||  | ||||||| |||| |||||||||||||||| || ||||| |||||||||| | ||| ||||||||||| |||||||||||||    
T  10871263 tggaatgaaatggaacataatggaacccatttcatccaataccactcactcttccaaattttcattcccctcaatttgggatgtatgcaatggaatggaa 10871362  T
Q  174 ca 175  Q
    ||    
T  10871363 ca 10871364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 170
Target Start/End: Original strand, 33091175 - 33091271
Alignment:
Q  74 tggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatg 170  Q
    |||||||||||||||||  |||||||  ||||||| | |||||||||| || | |||||| ||||||| ||||| |||||| |||||||||||||||    
T  33091175 tggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatg 33091271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 169
Target Start/End: Complemental strand, 7365174 - 7365049
Alignment:
Q  44 attccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctc 143  Q
    |||||||||||||| |||||||||    |||||| ||| |||||||   ||||| |||||||||||||||||||| ||  | | |||||||||||||| |    
T  7365174 attccattgtttggatttgcaaaaagtgaatggagtgggatggaatacaatggatctcattccatccaataccacccaaaccttcaatttttcattcccc 7365075  T
Q  144 ccaaattgggatgtatccaatggaat 169  Q
     |||||| || ||||| |||||||||    
T  7365074 tcaaattagggtgtattcaatggaat 7365049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 174
Target Start/End: Complemental strand, 19694680 - 19694550
Alignment:
Q  44 attccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctc 143  Q
    |||||||||||||| |||||||||   |||||||| |||||||||  | ||||||  ||||||||||||| |||   | || | | |||||||||||| |    
T  19694680 attccattgtttggatttgcaaaaaattaatggaagggaatggaacataatggaatccattccatccaattccatcaaatccttccatttttcattcccc 19694581  T
Q  144 ccaaattgggatgtatccaatggaatggaac 174  Q
    |||| ||||| || || ||||||||||||||    
T  19694580 ccaatttggggtgcatgcaatggaatggaac 19694550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 29063579 - 29063652
Alignment:
Q  44 attccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaatacca 117  Q
    |||||||||||||| |||||||||    |||||| ||| |||||||   ||||| |||||||||||||||||||    
T  29063579 attccattgtttggatttgcaaaaagtgaatggagtgggatggaatacaatggatctcattccatccaatacca 29063652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 29118433 - 29118506
Alignment:
Q  44 attccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatccaatacca 117  Q
    |||||||||||||| |||||||||    |||||| ||| |||||||   ||||| |||||||||||||||||||    
T  29118433 attccattgtttggatttgcaaaaagtgaatggagtgggatggaatacaatggatctcattccatccaatacca 29118506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 73 - 170
Target Start/End: Complemental strand, 21527 - 21430
Alignment:
Q  73 atggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaatttttcattcctcccaaattgggatgtatccaatggaatg 170  Q
    ||||||||||||||||||  |||||||  ||||||| | |||||||||| || | |||||| ||||||| ||||| |||||| |||||||||||||||    
T  21527 atggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatg 21430  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 9366 - 9274
Alignment:
Q  18 aatggaatgggatggaatagagtcagattccattgtttggttttgcaaaactgtaatggaatggaatggaatgtgatggaactcattccatcc 110  Q
    ||||||||||  ||| || || ||| |||||||||||||  |||| |||| | ||||||| |||||| |||| ||||||||  ||||||||||    
T  9366 aatggaatggagtgggatggaatcatattccattgtttgaatttgtaaaattttaatggagtggaattgaatatgatggaatccattccatcc 9274  T

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