View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5855_low_25 (Length: 252)
Name: NF5855_low_25
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5855_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 237
Target Start/End: Original strand, 1181410 - 1181638
Alignment:
| Q |
13 |
aaaataacatgcctcacaagttttggggataagcagtgaatattgttgcttatattatgaacaactgcctaacaaaaagctgaaaaacaaagtatcagaa |
112 |
Q |
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| T |
1181410 |
aaaataacatgcctcacaagttttggggataagcagtgaatattgttgcttatattctgaacaactgcctaacaaaaagctgaaaaacaaagtatcagaa |
1181509 |
T |
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| Q |
113 |
taagcttggaatggaagaaagccaaatctgaagcatttgaaagtatttggctcaa----tctgttacaaacacattcctgatgcaaagagaagcaagctt |
208 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1181510 |
taagcttggaatggaagaaagccaaatgtgaagcatttgaaagtatttggctcaatctgtctgttacaaacacattcctgatgcaaagagaagcaaactt |
1181609 |
T |
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| Q |
209 |
gatgatagaagtgagaaaatggtacttat |
237 |
Q |
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| T |
1181610 |
gatgatagaagtgagaaaatggtacttat |
1181638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 229
Target Start/End: Original strand, 18193423 - 18193563
Alignment:
| Q |
89 |
aagctgaaaaacaaagtatcagaataagcttggaatggaagaaagccaaatctgaagcatttgaaagtatttggctcaatctgttacaaacacattcctg |
188 |
Q |
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| T |
18193423 |
aagctgaagaacaaagtgctagaagaagcttggtgtggaagaaaaccaagtttcaaatacttgaaggtgtttggttcaatctgctataaacacatcccag |
18193522 |
T |
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| Q |
189 |
atgcaaagagaagcaagcttgatgatagaagtgagaaaatg |
229 |
Q |
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| T |
18193523 |
atgcaaaaagaagcaagttagatgataaaagtgagaaaatg |
18193563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 225
Target Start/End: Complemental strand, 32370101 - 32369985
Alignment:
| Q |
109 |
agaataagcttggaatggaagaaagccaaatctgaagcatttgaaagtatttggctcaatctgttacaaacacattcctgatgcaaagagaagcaagctt |
208 |
Q |
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|||| ||||||||| ||||||||| |||| | | || |||||||| || ||||| ||||||||||| ||||||||||| ||||||||||||||||| || |
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| T |
32370101 |
agaagaagcttggagtggaagaaaaccaagtgtcaaacatttgaaggtgtttggttcaatctgttataaacacattccagatgcaaagagaagcaaacta |
32370002 |
T |
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| Q |
209 |
gatgatagaagtgagaa |
225 |
Q |
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| T |
32370001 |
gatgataagagtgagaa |
32369985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 229
Target Start/End: Original strand, 9636065 - 9636205
Alignment:
| Q |
89 |
aagctgaaaaacaaagtatcagaataagcttggaatggaagaaagccaaatctgaagcatttgaaagtatttggctcaatctgttacaaacacattcctg |
188 |
Q |
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|||||||| || |||||| |||| |||||||||||||||||||||| || ||||||| | ||||| |||||||| || || || || |||||||||| |
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| T |
9636065 |
aagctgaagaataaagtactagaagaagcttggaatggaagaaagcctgatgtgaagcacattaaagtgtttggctctatatgctataagcacattcctg |
9636164 |
T |
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| Q |
189 |
atgcaaagagaagcaagcttgatgatagaagtgagaaaatg |
229 |
Q |
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|||||| | || | ||||||||||| || |||||||||| |
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| T |
9636165 |
atgcaagaaagagtatgcttgatgataaaaatgagaaaatg |
9636205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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