View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5855_low_29 (Length: 241)

Name: NF5855_low_29
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5855_low_29
NF5855_low_29
[»] chr2 (3 HSPs)
chr2 (17-182)||(13449304-13449469)
chr2 (17-211)||(13462296-13462490)
chr2 (17-214)||(13441109-13441306)
[»] chr8 (1 HSPs)
chr8 (26-212)||(12640569-12640755)
[»] chr5 (2 HSPs)
chr5 (21-214)||(28386246-28386430)
chr5 (17-214)||(12541594-12541779)
[»] chr4 (3 HSPs)
chr4 (26-209)||(48959055-48959238)
chr4 (26-91)||(48963315-48963380)
chr4 (26-181)||(48966271-48966426)
[»] chr7 (1 HSPs)
chr7 (17-211)||(3416609-3416803)
[»] chr6 (4 HSPs)
chr6 (141-211)||(12589375-12589445)
chr6 (141-214)||(12482658-12482731)
chr6 (17-84)||(12589266-12589333)
chr6 (33-89)||(12482550-12482606)


Alignment Details
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 17 - 182
Target Start/End: Complemental strand, 13449469 - 13449304
Alignment:
Q  17 ccctctttttgacatagcaactatgtttgcatcccgtggccagcaagtcacagtcatcaccactccctccaacgcaaaatcccttaccaaatctctctca 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13449469 ccctctttttgacatagcaactatgtttgcatcccgtggccagcaagtaacagtcatcaccactcccgccaacgcaaaatcccttaccaaatctctctca 13449370  T
Q  117 tccgacgctccttcattccttcgtcttcacaccgttgacttcccctcccaacaagtcggcctccct 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13449369 tccgacgctccttcattccttcgtcttcacaccgttgacttcccctcccaacaagtcggcctccct 13449304  T

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Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 13462490 - 13462296
Alignment:
Q  17 ccctctttttgacatagcaactatgtttgcatcccgtggccagcaagtcacagtcatcaccactccctccaacgcaaaatcccttaccaaatctctctca 116  Q
    |||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||   |||||||||||||||||||||||    
T  13462490 ccctctttttgacatagcaattatgtttgcatcccgtggccaacacgtcacagtcatcaccactccctccaacgtccaatcccttaccaaatctctctca 13462391  T
Q  117 tccgacgctccttcattccttcgtcttcacaccgttgacttcccctcccaacaagtcggcctccctaacgacgttgaatctttgtcctccaccac 211  Q
    |||| |||||| ||  |||||||  |||||||| | || ||||||||||||||||| ||||| ||| | | | |||||||| |||| ||||||||    
T  13462390 tccgccgctccctccctccttcgctttcacaccatcgaattcccctcccaacaagttggccttcctgatggcattgaatctatgtcttccaccac 13462296  T

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Target: chr2; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 13441306 - 13441109
Alignment:
Q  17 ccctctttttgacatagcaactatgtttgcatcccgtggccagcaagtcacagtcatcaccactccctccaacgcaaaatcccttaccaaatctctctca 116  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||  ||||||| |||||||||||||||    
T  13441306 ccctctttgtgacatagcaactatgtttgcatcccgtggccaacaagtcacaatcatcaccactccctccaacgctcaatccctaaccaaatctctctca 13441207  T
Q  117 tccgacgc-tccttcattccttcgtcttcacaccgttgacttcccctcccaacaagtcggcctccctaacgacgttgaatctttgtcctccaccactga 214  Q
    ||||  || |||||| ||||| ||  | |||||||| ||||| |||||||||||||||| ||||||| | | | |||||||| |||| |||||||||||    
T  13441206 tccgcggcttccttc-ttcctccgcttccacaccgtcgactttccctcccaacaagtcgacctccctgaaggcattgaatctatgtcttccaccactga 13441109  T

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Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 212
Target Start/End: Original strand, 12640569 - 12640755
Alignment:
Q  26 tgacatagcaactatgtttgcatcccgtggccagcaagtcacagtcatcaccactccctccaacgcaaaatcccttaccaaatctctctcatccgacgct 125  Q
    |||||||||| || |||||||||||| |||||| ||||||||  ||||||||||||||||||||||  | | | |||||||||||||||| | || || |    
T  12640569 tgacatagcagctttgtttgcatcccatggccaacaagtcacgatcatcaccactccctccaacgcccatttctttaccaaatctctctccttcgtcgat 12640668  T
Q  126 ccttcattccttcgtcttcacaccgttgacttcccctcccaacaagtcggcctccctaacgacgttgaatctttgtcctccaccact 212  Q
    || |  ||||| || ||||||||||| ||||||||||||||||||||||  || ||  ||| ||||||||| |||||||||||||||    
T  12640669 ccgtttttcctccgccttcacaccgtcgacttcccctcccaacaagtcgatcttcccgacggcgttgaatcattgtcctccaccact 12640755  T

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Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 21 - 214
Target Start/End: Complemental strand, 28386430 - 28386246
Alignment:
Q  21 ctttttgacatagcaactatgtttgcatcccgtggccagcaagtcacagtcatcaccactccctccaacgcaaaatcccttaccaaatctctctcatccg 120  Q
    |||| ||| ||||||||| |||||||||| |||||||| || |||||| ||||||||||||||||||| ||  |||||||||| ||| |||||||||| |    
T  28386430 ctttgtgatatagcaactttgtttgcatcacgtggccaacatgtcacaatcatcaccactccctccaatgcccaatcccttactaaaactctctcatctg 28386331  T
Q  121 acgctccttcattccttcgtcttcacaccgttgacttcccctcccaacaagtcggcctccctaacgacgttgaatctttgtcctccaccactga 214  Q
     |||         ||| || |||||||||||||| |||||||  |||||||||| ||||||||| | |||||| ||| || |||||||||||||    
T  28386330 ccgc---------cctccgccttcacaccgttgaattcccctatcaacaagtcgacctccctaaaggcgttgagtctatgacctccaccactga 28386246  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 12541779 - 12541594
Alignment:
Q  17 ccctctttttgacatagcaactatgtttgcatcccgtggccagcaagtcacagtcatcaccactccctccaacgcaaaatcccttaccaaatctctctca 116  Q
    |||||||| ||| ||||||||| |||||||||| | |||||| ||||||||| ||||||||||||||||||| |   || ||||||||||||||||| ||    
T  12541779 ccctctttgtgatatagcaactttgtttgcatcacatggccaacaagtcacaatcatcaccactccctccaatgttgaaacccttaccaaatctctccca 12541680  T
Q  117 tccgacgctccttcattccttcgtcttcacaccgttgacttcccctcccaacaagtcggcctccctaacgacgttgaatctttgtcctccaccactga 214  Q
    |||     ||| |||  ||     |||||||| || |||||||||||| ||||||||| ||||||||| | | |||||||| ||||||||||||||||    
T  12541679 tcc----atcc-tca--cc-----cttcacactgtcgacttcccctccgaacaagtcgacctccctaaaggcattgaatctatgtcctccaccactga 12541594  T

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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 26 - 209
Target Start/End: Complemental strand, 48959238 - 48959055
Alignment:
Q  26 tgacatagcaactatgtttgcatcccgtggccagcaagtcacagtcatcaccactccctccaacgcaaaatcccttaccaaatctctctcatccgacgct 125  Q
    ||||||||||||| |||||||||||| |||||| ||||| ||| |||||||||||||||||||| |  | | | |||||||||||||||||   |  | |    
T  48959238 tgacatagcaactctgtttgcatcccatggccaacaagtgacaatcatcaccactccctccaactcccacttctttaccaaatctctctcaagtgttgat 48959139  T
Q  126 ccttcattccttcgtcttcacaccgttgacttcccctcccaacaagtcggcctccctaacgacgttgaatctttgtcctccacc 209  Q
    || |  ||||| || ||||||   ||  |||| |||||||||||||| ||||||||| ||| |||||||||| |||||||||||    
T  48959138 cccttcttcctccgccttcaccttgtcaactttccctcccaacaagttggcctccctgacggcgttgaatctatgtcctccacc 48959055  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 48963380 - 48963315
Alignment:
Q  26 tgacatagcaactatgtttgcatcccgtggccagcaagtcacagtcatcaccactccctccaacgc 91  Q
    |||||||||| || ||||||| ||||||||||| ||||||||| ||||||||||||||||||||||    
T  48963380 tgacatagcagctctgtttgcgtcccgtggccaacaagtcacaatcatcaccactccctccaacgc 48963315  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 181
Target Start/End: Complemental strand, 48966426 - 48966271
Alignment:
Q  26 tgacatagcaactatgtttgcatcccgtggccagcaagtcacagtcatcaccactccctccaacgcaaaatcccttaccaaatctctctcatccgacgct 125  Q
    ||||||||||||||| |||||||| | |||||| ||||||||  ||||||| |||||||| ||||| || | |||| ||||||||||  | |||   | |    
T  48966426 tgacatagcaactatctttgcatctcatggccaacaagtcaccatcatcacaactccctctaacgccaacttcctttccaaatctcttccctccatagat 48966327  T
Q  126 ccttcattccttcgtcttcacaccgttgacttcccctcccaacaagtcggcctccc 181  Q
    |||   ||||| ||  ||||||||||||| ||||||| ||||||||| || |||||    
T  48966326 cctctcttcctccgcattcacaccgttgatttcccctaccaacaagttggtctccc 48966271  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 3416609 - 3416803
Alignment:
Q  17 ccctctttttgacatagcaactatgtttgcatcccgtggccagcaagtcacagtcatcaccactccctccaacgcaaaatcccttaccaaatctctctca 116  Q
    |||||||| ||| |||||| ||||||||||||||| |||||| || |||||| ||||||||||||||||||| || ||||  ||||| |||||||| ||     
T  3416609 ccctctttctgatatagcagctatgtttgcatcccatggccaacatgtcacaatcatcaccactccctccaatgccaaatttcttacaaaatctctttct 3416708  T
Q  117 tccgacgctccttcattccttcgtcttcacaccgttgacttcccctcccaacaagtcggcctccctaacgacgttgaatctttgtcctccaccac 211  Q
    |  | |||||| |  ||||| || ||||||||||| ||||| ||||  |||||| | | ||||||| | | | |||||||| | |||||||||||    
T  3416709 tatgccgctcccttcttcctccgccttcacaccgtcgactttccctttcaacaaatggacctccctgaaggcattgaatctatatcctccaccac 3416803  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 12589375 - 12589445
Alignment:
Q  141 cttcacaccgttgacttcccctcccaacaagtcggcctccctaacgacgttgaatctttgtcctccaccac 211  Q
    ||||||| ||| || |||||||||| |||||||||||||||| |||  || ||||||||||||||||||||    
T  12589375 cttcacatcgtagatttcccctccctacaagtcggcctccctgacggtgtcgaatctttgtcctccaccac 12589445  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 12482658 - 12482731
Alignment:
Q  141 cttcacaccgttgacttcccctcccaacaagtcggcctccctaacgacgttgaatctttgtcctccaccactga 214  Q
    ||||||||||| ||||| |||| |||| ||||||||||| |||||| | | |||||||||||||||||| ||||    
T  12482658 cttcacaccgtcgactttcccttccaagaagtcggcctcgctaacggcatagaatctttgtcctccaccgctga 12482731  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 12589266 - 12589333
Alignment:
Q  17 ccctctttttgacatagcaactatgtttgcatcccgtggccagcaagtcacagtcatcaccactccct 84  Q
    |||||| | |||||| |||||  ||||||||||||||||||| ||||||||| ||| |||||||||||    
T  12589266 ccctctatgtgacattgcaaccctgtttgcatcccgtggccaacaagtcacaatcaccaccactccct 12589333  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 12482550 - 12482606
Alignment:
Q  33 gcaactatgtttgcatcccgtggccagcaagtcacagtcatcaccactccctccaac 89  Q
    |||||| |||||||||| |||||||| || |||||| ||||||||||||| ||||||    
T  12482550 gcaactctgtttgcatcacgtggccatcatgtcacaatcatcaccactccttccaac 12482606  T

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