View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5855_low_3 (Length: 535)

Name: NF5855_low_3
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5855_low_3
NF5855_low_3
[»] chr4 (9 HSPs)
chr4 (15-535)||(35033154-35033674)
chr4 (15-535)||(13779571-13780092)
chr4 (73-134)||(35292682-35292743)
chr4 (37-139)||(21261065-21261167)
chr4 (29-140)||(41222938-41223049)
chr4 (15-130)||(46142650-46142765)
chr4 (73-132)||(50859444-50859503)
chr4 (162-243)||(48085141-48085223)
chr4 (325-397)||(21261244-21261315)
[»] chr3 (9 HSPs)
chr3 (12-535)||(25045700-25046223)
chr3 (36-531)||(32278690-32279185)
chr3 (36-205)||(42028615-42028785)
chr3 (28-239)||(44713945-44714157)
chr3 (290-370)||(42957730-42957810)
chr3 (73-140)||(39439298-39439365)
chr3 (162-244)||(42958016-42958099)
chr3 (83-141)||(24373430-24373488)
chr3 (77-131)||(27011918-27011972)
[»] chr2 (6 HSPs)
chr2 (15-535)||(28198495-28199015)
chr2 (15-205)||(28219653-28219844)
chr2 (73-140)||(10354882-10354949)
chr2 (71-226)||(17999010-17999165)
chr2 (184-226)||(23701584-23701626)
chr2 (76-131)||(44247065-44247120)
[»] chr5 (5 HSPs)
chr5 (43-535)||(30085228-30085720)
chr5 (94-243)||(7505347-7505496)
chr5 (36-205)||(4944399-4944569)
chr5 (64-140)||(11617866-11617942)
chr5 (39-154)||(41484266-41484381)
[»] chr7 (4 HSPs)
chr7 (15-535)||(19625745-19626263)
chr7 (162-239)||(3215307-3215384)
chr7 (73-140)||(36656838-36656905)
chr7 (54-140)||(19848459-19848545)
[»] chr1 (14 HSPs)
chr1 (39-252)||(8099598-8099811)
chr1 (73-238)||(34970739-34970904)
chr1 (28-131)||(15582297-15582400)
chr1 (73-140)||(48047023-48047090)
chr1 (163-252)||(8102206-8102296)
chr1 (19-243)||(41404753-41404978)
chr1 (290-399)||(8103817-8103926)
chr1 (163-226)||(8103704-8103768)
chr1 (38-141)||(8103588-8103691)
chr1 (73-132)||(49765595-49765654)
chr1 (290-399)||(8102319-8102428)
chr1 (196-250)||(45848718-45848772)
chr1 (290-355)||(8099511-8099575)
chr1 (190-239)||(41419014-41419063)
[»] scaffold0022 (2 HSPs)
scaffold0022 (63-131)||(43492-43560)
scaffold0022 (63-131)||(77212-77280)
[»] chr8 (2 HSPs)
chr8 (73-132)||(38680516-38680575)
chr8 (75-146)||(29844956-29845027)
[»] scaffold0110 (1 HSPs)
scaffold0110 (76-130)||(37901-37955)


Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 15 - 535
Target Start/End: Original strand, 35033154 - 35033674
Alignment:
Q  15 gaatggagcgaagtggaacgtaatggaatggaacggagcggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttccac 114  Q
    |||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35033154 gaatggagcggagtggaacggaatgggatggaacggagcggaacaaaggttccatcctattgtttggatattttactacggaatggaactaattttccac 35033253  T
Q  115 tccattgtttggaaagtgaatggaacaaaatgatttataannnnnnnattccatttttacactttacttaaaaacatcactatgttgaattctcaactca 214  Q
    ||||||||||||||||||||||||||  ||||||||||||       |||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  35033254 tccattgtttggaaagtgaatggaacggaatgatttataatttttttattccatttttaccatttacttaaaaacatcactatgttgaattctcaactca 35033353  T
Q  215 attcaatcaatacgtagttattttgacattattcataaatagtacaaaataaacaagtaaaggaataaacacaagtagcaccacaaattaagataagaac 314  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35033354 attcaatcaatacgtagttattttgacattattcataaatagcacaaaataaacaagtaaaggaataaacacaagtagcaccacaaattaagataagaac 35033453  T
Q  315 aaaacatttttaaatttcggttctggcataatttgcaactacagtatttccatttgtcaggttaaataaaacaataataatataggttacacgttaaaat 414  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35033454 aaaacatttttaaatttcggttctgacataatttgcaactacagtatttctatttgtcaggttaaataaaacaataataatataggttacgcgttaaaat 35033553  T
Q  415 tcatctattttctagcctatgtaggttacattagttgcaaattactattcatcgtatttttatatataattcaatatcaatagtttttagatataatcca 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  35033554 tcatctattttctagcctatgtaggttacattagttgcaaattactattcatcgtatttttatatataattcaatatcaatagtttttagatataattca 35033653  T
Q  515 aaatcaatctcaaagaggttt 535  Q
    ||||| |||||||||||||||    
T  35033654 aaatcgatctcaaagaggttt 35033674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 15 - 535
Target Start/End: Complemental strand, 13780092 - 13779571
Alignment:
Q  15 gaatggagcgaagtggaacgtaatggaatggaacggagcggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttccac 114  Q
    |||||||||| ||||||||  ||||||||||||  |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13780092 gaatggagcggagtggaacaaaatggaatggaatcgagcggaataaaggttccatcctattgtttggatattttactacggaatggaactaattttccac 13779993  T
Q  115 tccattgtttggaaagtgaatggaacaaaatgatttataannnnnnnattccatttttacactttacttaaaaacatcactatgttgaattctcaactca 214  Q
    ||||||||||||||||||||||||||  ||||||||||||       |||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  13779992 tccattgtttggaaagtgaatggaacggaatgatttataatttttttattccatttttaccatttacttaaaaacatcactatgttgaattctcaactca 13779893  T
Q  215 attcaatcaatacgtagttattttgacattattcataaatagtacaaaataaacaagtaaaggaataaacacaagtagcaccacaaattaagataagaac 314  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13779892 attcaatcaatacgtagttattttgacattattcataaatagcacaaaataaacaagtaaaggaataaacacaagtagcaccacaaattaagataagaac 13779793  T
Q  315 aaaacatttttaaatttcggttctggcataatttgcaactacagtatttccatttgtcaggttaaa-taaaacaataataatataggttacacgttaaaa 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||| ||    
T  13779792 aaaacatttttaaatttcggttctggcataatttgcaactacagtattttcatttgtcaggttaaattaaaacaataataatatagattacacgttacaa 13779693  T
Q  414 ttcatctattttctagcctatgtaggttacattagttgcaaattactattcatcgtatttttatatataattcaatatcaatagtttttagatataatcc 513  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |    
T  13779692 ttcatctattttctagcgtatgtaggttacattagttgcaaattactattcatcgtatttttagatataattcaatatcaatagtttttagatataattc 13779593  T
Q  514 aaaatcaatctcaaagaggttt 535  Q
    |||||| |||| ||||||||||    
T  13779592 aaaatcgatctaaaagaggttt 13779571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 35292743 - 35292682
Alignment:
Q  73 attgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtgaa 134  Q
    |||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||    
T  35292743 attgtttggatatttcaagacggaatggaactaatttcccactccattgtttggaaagtgaa 35292682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 37 - 139
Target Start/End: Original strand, 21261065 - 21261167
Alignment:
Q  37 atggaatggaacggagcggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtgaatg 136  Q
    ||||||||||| |||| ||||||||| |||||| | ||||||| ||||||  |  ||||||||  |||||||||| |||||||||||||||||||||| |    
T  21261065 atggaatggaatggagtggaacaaagattccattccattgttttgatattatatgacggaatgagactaattttctactccattgtttggaaagtgaacg 21261164  T
Q  137 gaa 139  Q
    |||    
T  21261165 gaa 21261167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 140
Target Start/End: Original strand, 41222938 - 41223049
Alignment:
Q  29 ggaacgtaatggaatggaacggagcggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttccactccattgtttggaa 128  Q
    |||||| ||||||| ||||||||  |||| |||| |||||| | |||||||||||| || |  | |||| ||||||| ||||||| ||||||||||||||    
T  41222938 ggaacggaatggaacggaacggaatggaataaagattccattccattgtttggatactttatgatggaacggaactagttttccattccattgtttggaa 41223037  T
Q  129 agtgaatggaac 140  Q
    ||| || |||||    
T  41223038 agttaacggaac 41223049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 46142765 - 46142650
Alignment:
Q  15 gaatggagcgaagtggaacgtaatggaatggaacggagcggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttccac 114  Q
    ||||||| || ||||||| | |||||| |||| ||||  |||| | || |||||| | |||||||||||||||||| |||||  ||||  || ||| ||     
T  46142765 gaatggaacggagtggaatgaaatggagtggagcggaatggaagagagattccattccattgtttggatatttcacgacggagcggaataaaattttcat 46142666  T
Q  115 tccattgtttggaaag 130  Q
    ||||||||||||||||    
T  46142665 tccattgtttggaaag 46142650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 132
Target Start/End: Complemental strand, 50859503 - 50859444
Alignment:
Q  73 attgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtg 132  Q
    |||||||||||||||    |||||||| ||||||||| |||||||||| |||||||||||    
T  50859503 attgtttggatattttttgacggaatgaaactaatttcccactccattatttggaaagtg 50859444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 48085223 - 48085141
Alignment:
Q  162 attccatttttacactttacttaaaaa-catcactatgttgaattctcaactcaattcaatcaatacgtagttattttgacat 243  Q
    |||||| |||||| ||||| ||||||| ||||| |  | |||||| | |||||||||||||||||| || |||||||||||||    
T  48085223 attccaattttaccctttatttaaaaaacatcaattggctgaatttttaactcaattcaatcaatatgttgttattttgacat 48085141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 397
Target Start/End: Original strand, 21261244 - 21261315
Alignment:
Q  325 taaatttcggttctggcataatttgcaactacagtatttccatttgtcaggttaaataaaacaataataatat 397  Q
    ||||||| ||||||| |||||||||||||||  |||||| | |||| ||| |||||  |||||||||||||||    
T  21261244 taaattttggttctg-cataatttgcaactagtgtattttcctttggcagattaaaccaaacaataataatat 21261315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 439; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 12 - 535
Target Start/End: Complemental strand, 25046223 - 25045700
Alignment:
Q  12 acagaatggagcgaagtggaacgtaatggaatggaacggagcggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttc 111  Q
    ||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  25046223 acagaatggagcggagtggaactgaatggaatggaacggagcggaacaaaggttccatcctattgtttggatattttactacggaattgaactaattttc 25046124  T
Q  112 cactccattgtttggaaagtgaatggaacaaaatgatttataannnnnnnattccatttttacactttacttaaaaacatcactatgttgaattctcaac 211  Q
    ||||||||||||| |||||||||||||||  ||||||||||||       ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25046123 cactccattgtttagaaagtgaatggaacggaatgatttataacttttttattccatttttaccctttacttaaaaacatcactatgttgaattctcaac 25046024  T
Q  212 tcaattcaatcaatacgtagttattttgacattattcataaatagtacaaaataaacaagtaaaggaataaacacaagtagcaccacaaattaagataag 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||| |    
T  25046023 tcaattcaatcaatacgtagttattttgacattattcataaataacacaaaataaacaagtaaaggaataaacacaagtagaaccacaaattaagatatg 25045924  T
Q  312 aacaaaacatttttaaatttcggttctggcataatttgcaactacagtatttccatttgtcaggttaaataaaacaataataatataggttacacgttaa 411  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25045923 aacaaaacatttttaaatttcggttatggcataatttgcaactacagtatttccatttgtcaggttaaataaaacaataataatataggttacacgttaa 25045824  T
Q  412 aattcatctattttctagcctatgtaggttacattagttgcaaattactattcatcgtatttttatatataattcaatatcaatagtttttagatataat 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25045823 aattcatctattttctagcctatgtaggttacattagttgcaaattactattcatcgtatttttatatataattcaatatcaatagtttttagatataat 25045724  T
Q  512 ccaaaatcaatctcaaagaggttt 535  Q
     ||||||| |||||||||||||||    
T  25045723 tcaaaatcgatctcaaagaggttt 25045700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 36 - 531
Target Start/End: Complemental strand, 32279185 - 32278690
Alignment:
Q  36 aatggaatggaacggagcggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtgaat 135  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  32279185 aatggaatggaacggagcggaacaaaggttccatcctattgtttggatattttactacggaattgaactaattttccactccattgtttggaaagtgaat 32279086  T
Q  136 ggaacaaaatgatttataannnnnnnattccatttttacactttacttaaaaacatcactatgttgaattctcaactcaattcaatcaatacgtagttat 235  Q
    |||||  ||||||||||||       ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  32279085 ggaacggaatgatttataactttttcattccatttttaccctttacttaaaaacatcactatgttgaattctcaactcaattcaatcaataagtagttat 32278986  T
Q  236 tttgacattattcataaatagtacaaaataaacaagtaaaggaataaacacaagtagcaccacaaattaagataagaacaaaacatttttaaatttcggt 335  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32278985 tttgacattattcataaatagcacaaaataaacaagtaaaggaataaacacaagtagaaccacaaattaagataagaacaaaacatttttaaatttcggt 32278886  T
Q  336 tctggcataatttgcaactacagtatttccatttgtcaggttaaataaaacaataataatataggttacacgttaaaattcatctattttctagcctatg 435  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32278885 tctggcataatttgcaactacaatatttccatttgtcaggttaaataaaacaataataatataggttacacgttaaaattcatctattttctagcctatg 32278786  T
Q  436 taggttacattagttgcaaattactattcatcgtatttttatatataattcaatatcaatagtttttagatataatccaaaatcaatctcaaagag 531  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  32278785 taggttacattagttgcaaattactattcatcgtatttttatatataattcaatatcaatagtttttagatataattcaaaatcgatctcaaagag 32278690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 36 - 205
Target Start/End: Original strand, 42028615 - 42028785
Alignment:
Q  36 aatggaatggaacggagcggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtgaat 135  Q
    |||||||||||| |||| ||||||||| || ||| | ||||||||||||||  ||  ||||||||||||||||| |||||||||||||||||||||| |     
T  42028615 aatggaatggaatggagtggaacaaagatttcattccattgtttggatattatacggcggaatggaactaatttcccactccattgtttggaaagtggac 42028714  T
Q  136 ggaacaaaatgatttataannnnnnnattccatttttacactttactta-aaaacatcactatgttgaatt 205  Q
    ||||  |||| | ||||||       ||||||||||||| |||| |||| ||||  |||||||||||||||    
T  42028715 ggaatgaaattagttataacttttttattccatttttacccttttcttagaaaatttcactatgttgaatt 42028785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 28 - 239
Target Start/End: Complemental strand, 44714157 - 44713945
Alignment:
Q  28 tggaacgtaatggaatggaacggagcggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttccactccattgtttgga 127  Q
    |||||| |||||||||||| ||||  |||| |||| || ||| | ||||||||||||||| || | ||||||||||||||||| || || |||||||||     
T  44714157 tggaacataatggaatggagcggaatggaataaagatttcattcaattgtttggatattttacgatggaatggaactaatttttcattctattgtttggc 44714058  T
Q  128 aagtgaatggaacaaaatgatttataannnnnnnattccatttttacactttactt-aaaaacatcactatgttgaattctcaactcaattcaatcaata 226  Q
    || |||| |||||  ||||| ||||||       |||||| |||||| ||||| || ||||||||||  | ||||||||||||||||||| ||||| |||    
T  44714057 aaatgaacggaacggaatgaattataatttttttattccaattttaccctttagttaaaaaacatcaagaggttgaattctcaactcaatccaatccata 44713958  T
Q  227 cgtagttattttg 239  Q
     ||  ||||||||    
T  44713957 tgtgcttattttg 44713945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 290 - 370
Target Start/End: Complemental strand, 42957810 - 42957730
Alignment:
Q  290 tagcaccacaaattaagataagaacaaaacatttttaaatttcggttctggcataatttgcaactacagtatttccatttg 370  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||   |||||||||  ||| || |||||||||||||    
T  42957810 tagcaccacaaattaaggtaagaacaaaacatttttaaattttggttgcagcataatttaaaacaactgtatttccatttg 42957730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 73 - 140
Target Start/End: Original strand, 39439298 - 39439365
Alignment:
Q  73 attgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtgaatggaac 140  Q
    |||||||||||||||||  |||||||| ||||||||| ||||||||||||||| |||||||| |||||    
T  39439298 attgtttggatatttcaagacggaatgaaactaatttcccactccattgtttgaaaagtgaacggaac 39439365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 162 - 244
Target Start/End: Complemental strand, 42958099 - 42958016
Alignment:
Q  162 attccatttttacactttacttaaaaa-catcactatgttgaattctcaactcaattcaatcaatacgtagttattttgacatt 244  Q
    ||||||||||||||||| ||||||||| |||||||||| |||||| |||| ||||||| || |||| ||  |||||||||||||    
T  42958099 attccatttttacacttcacttaaaaaacatcactatgctgaattatcaagtcaattcgattaatatgtgattattttgacatt 42958016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 141
Target Start/End: Original strand, 24373430 - 24373488
Alignment:
Q  83 tatttcactacggaatggaactaattttccactccattgtttggaaagtgaatggaaca 141  Q
    ||||| || |||||||| ||||||||| ||| |||||||||||||||||| ||||||||    
T  24373430 tattttacgacggaatgaaactaatttcccattccattgtttggaaagtggatggaaca 24373488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 27011972 - 27011918
Alignment:
Q  77 tttggatatttcactacggaatggaactaattttccactccattgtttggaaagt 131  Q
    |||||||||||||| | |||| ||| |||| ||||| ||||||||||||||||||    
T  27011972 tttggatatttcacgatggaagggagctaactttccgctccattgtttggaaagt 27011918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 436; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 15 - 535
Target Start/End: Original strand, 28198495 - 28199015
Alignment:
Q  15 gaatggagcgaagtggaacgtaatggaatggaacggagcggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttccac 114  Q
    ||||| |||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  28198495 gaatgaagcggagtggaacggaatggaatggaacggagcggaacaaaggttccaccctattgtttggatattttactacggaatggaactaattttccac 28198594  T
Q  115 tccattgtttggaaagtgaatggaacaaaatgatttataannnnnnnattccatttttacactttacttaaaaacatcactatgttgaattctcaactca 214  Q
    | ||||||||||||||||||||||||  ||||||||||||       ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28198595 ttcattgtttggaaagtgaatggaacggaatgatttataacttttttattccatttttaccctttacttaaaaacatcactatgttgaattctcaactca 28198694  T
Q  215 attcaatcaatacgtagttattttgacattattcataaatagtacaaaataaacaagtaaaggaataaacacaagtagcaccacaaattaagataagaac 314  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28198695 attcaatcaatacgtagttattttgacattattcataaatagcacaaaataaacaagtaaaggaataaacacgagtagcaccacaaattaagataagaac 28198794  T
Q  315 aaaacatttttaaatttcggttctggcataatttgcaactacagtatttccatttgtcaggttaaataaaacaataataatataggttacacgttaaaat 414  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  28198795 aaaacatttttaaatttcggttctggcataatttgcaactacaatatttccatttgtcaggttaaataaaacaataataatataggttacacattaaaat 28198894  T
Q  415 tcatctattttctagcctatgtaggttacattagttgcaaattactattcatcgtatttttatatataattcaatatcaatagtttttagatataatcca 514  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  28198895 tcatctattttctagcctatgtaggttacatttgttgcaaattactattcatcgtatttttatatataattcaatatcaatagtttttagatataattca 28198994  T
Q  515 aaatcaatctcaaagaggttt 535  Q
    ||||| |||||||||||||||    
T  28198995 aaatcgatctcaaagaggttt 28199015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 28219844 - 28219653
Alignment:
Q  15 gaatggagcgaagtggaacgtaatggaatggaacggagcggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttccac 114  Q
    |||||||||| | ||||||| |||||||||||| |||| ||||||||| || ||| | ||||||||||||||  ||  ||||||||||||||||| ||||    
T  28219844 gaatggagcggaatggaacggaatggaatggaatggagtggaacaaagatttcattccattgtttggatattatacggcggaatggaactaatttcccac 28219745  T
Q  115 tccattgtttggaaagtgaatggaacaaaatgatttataannnnnnnattccatttttacactttactta-aaaacatcactatgttgaatt 205  Q
    |||||||||||||||||| | ||||  |||| | ||||||       ||| ||||||||| |||| |||| ||||  |||||||||||||||    
T  28219744 tccattgtttggaaagtggacggaatgaaattagttataacttttttatttcatttttaccctttccttagaaaatttcactatgttgaatt 28219653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 73 - 140
Target Start/End: Complemental strand, 10354949 - 10354882
Alignment:
Q  73 attgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtgaatggaac 140  Q
    |||||||||||||||||  |||||||||||||||||| |||||||||||||||||| ||||| |||||    
T  10354949 attgtttggatatttcaagacggaatggaactaatttcccactccattgtttggaaggtgaacggaac 10354882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 71 - 226
Target Start/End: Original strand, 17999010 - 17999165
Alignment:
Q  71 ctattgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtgaatggaacaaaatgatttataannnnnnnattccattt 170  Q
    ||||||||||||||||| |  |||||||||||||||||| ||| ||||||||||| |||||| | |||||   | |  | ||||       ||| |||||    
T  17999010 ctattgtttggatattttatgacggaatggaactaatttcccattccattgtttgaaaagtggacggaacgggaagtgtcataacttttttatttcattt 17999109  T
Q  171 ttacactttacttaaaaacatcactatgttgaattctcaactcaattcaatcaata 226  Q
    |||| ||||| || |||| |||| | ||||||||| ||| ||||||||||||||||    
T  17999110 ttaccctttagtttaaaatatcaatttgttgaattgtcagctcaattcaatcaata 17999165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 23701626 - 23701584
Alignment:
Q  184 aaaaacatcactatgttgaattctcaactcaattcaatcaata 226  Q
    |||||||||| ||||||||||||||||||||||| ||||||||    
T  23701626 aaaaacatcaatatgttgaattctcaactcaattaaatcaata 23701584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 44247120 - 44247065
Alignment:
Q  76 gtttggatatttcactacggaatggaactaattttccactccattgtttggaaagt 131  Q
    ||||||||||||||| | |||| | |||||| ||||||||||||||||||| ||||    
T  44247120 gtttggatatttcacgatggaacgaaactaactttccactccattgtttgggaagt 44247065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 424; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 43 - 535
Target Start/End: Complemental strand, 30085720 - 30085228
Alignment:
Q  43 tggaacggagcggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtgaatggaacaa 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||      
T  30085720 tggaacggagcggaacaaaggttccatcctattgtttggatattttactacggaattgaactaattttccactccattgtttggaaagtgaatggaacgg 30085621  T
Q  143 aatgatttataannnnnnnattccatttttacactttacttaaaaacatcactatgttgaattctcaactcaattcaatcaatacgtagttattttgaca 242  Q
    ||||||||||||       ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30085620 aatgatttataacttttttatttcatttttaccctttacttaaaaacatcactatgttgaattctcaactcaattcaatcaatacgtagttattttgaca 30085521  T
Q  243 ttattcataaatagtacaaaataaacaagtaaaggaataaacacaagtagcaccacaaattaagataagaacaaaacatttttaaatttcggttctggca 342  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30085520 ttattcataaatagcacaaaataaacaagtaaaggaataaacacaagtataaccacaaattaagatatgaacaaaacatttttaaatttcggttctggca 30085421  T
Q  343 taatttgcaactacagtatttccatttgtcaggttaaataaaacaataataatataggttacacgttaaaattcatctattttctagcctatgtaggtta 442  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30085420 taatttgcaactacagtatttccatttgtcaggttaaataaaacaataataatataggttacacgttaaaattcatctattttctagcctatgtaggtta 30085321  T
Q  443 cattagttgcaaattactattcatcgtatttttatatataattcaatatcaatagtttttagatataatccaaaatcaatctcaaagaggttt 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  30085320 cattagttgcaaattactattcatcgtatttttatatataattcaatatcaatagtttttagatataattcaaaatcgatctcaaagaggttt 30085228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 94 - 243
Target Start/End: Original strand, 7505347 - 7505496
Alignment:
Q  94 ggaatggaactaattttccactccattgtttggaaagtgaatggaacaaaatgatttataannnnnnnattccatttttacactttacttaaaaacatca 193  Q
    |||||||| ||||||||||| ||||||||||| |||||  | |||||  ||||| |||||        |||||| ||||||  |||| ||||||||||||    
T  7505347 ggaatggagctaattttccattccattgtttgaaaagttgacggaacggaatgagttatatcttttttattccaattttaccttttatttaaaaacatca 7505446  T
Q  194 ctatgttgaattctcaactcaattcaatcaatacgtagttattttgacat 243  Q
     || |||||||| |||||||||||||||||||| || |||||||||||||    
T  7505447 ttaggttgaattttcaactcaattcaatcaatatgttgttattttgacat 7505496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 36 - 205
Target Start/End: Complemental strand, 4944569 - 4944399
Alignment:
Q  36 aatggaatggaacggagcggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtgaat 135  Q
    |||| |||||||||||| ||||||||| |||||| | ||||||||||||||  || ||| ||||||||||||||   |||||||||||||||||||| |     
T  4944569 aatgaaatggaacggagtggaacaaagattccattccattgtttggatattatacgacgaaatggaactaatttcatactccattgtttggaaagtggac 4944470  T
Q  136 ggaacaaaatgatttataannnnnnnattccatttttacactttactta-aaaacatcactatgttgaatt 205  Q
    ||||   ||| |  |||||       ||||||||||||| |||| |||| ||||| |||||||||||||||    
T  4944469 ggaatggaattagatataacttttttattccatttttacccttttcttagaaaacttcactatgttgaatt 4944399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 11617942 - 11617866
Alignment:
Q  64 ttccatcctattgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtgaatggaac 140  Q
    |||||| | |||||||| ||||||||  |||||||| ||||||||| |||||||||||||||||||||||| |||||    
T  11617942 ttccattccattgtttgaatatttcaagacggaatgaaactaatttcccactccattgtttggaaagtgaacggaac 11617866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 154
Target Start/End: Complemental strand, 41484381 - 41484266
Alignment:
Q  39 ggaatggaacggagcggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtgaatgga 138  Q
    ||||| ||| ||||||||||||   ||||||   ||||||||||||||| || | |||| ||||| |||| | || |||||||||| ||||||||| |||    
T  41484381 ggaatagaatggagcggaacaattattccatttcattgtttggatattttacgatggaacggaacaaattattcattccattgtttagaaagtgaacgga 41484282  T
Q  139 acaaaatgatttataa 154  Q
    ||  ||||| ||||||    
T  41484281 acggaatgaattataa 41484266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 15 - 535
Target Start/End: Complemental strand, 19626263 - 19625745
Alignment:
Q  15 gaatggagcgaagtggaacgtaatggaatggaacggagcggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttccac 114  Q
    |||||||||| ||||||||  |||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19626263 gaatggagcggagtggaacagaatggaatggaacgtagcggaataaaggttccatcctattgtttggatattttactacggaatggaactaattttccac 19626164  T
Q  115 tccattgtttggaaagtgaatggaacaaaatgatttataannnnnnnattccatttttacactttacttaaaaacatcactatgttgaattctcaactca 214  Q
    || |||||||||||||||||||||||  ||||||||||||       ||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  19626163 tcaattgtttggaaagtgaatggaacggaatgatttataatttttttattccatttttaccctttacttaaaaacatcact-tgttgaattctcaactca 19626065  T
Q  215 attcaatcaatacgtagttattttgacattattcataaatagtacaaaataaacaagtaaaggaataaacacaagtagcaccacaaattaagataagaac 314  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  19626064 attcaatcaatatgtagttattttgacattattcataaatagcacaaaataaacaagtaaaagaataaacacaagtagcaccacaaattaagataaga-c 19625966  T
Q  315 aaaacatttttaaatttcggttctggcataatttgcaactacagtatttccatttgtcaggttaaataaaacaataataatataggttacacgttaaaat 414  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  19625965 aaaacatttttaaatttcagttctggcataatttgcaactacagtatttccatttgtcaggttaaataaaacaataataatataggttacacgttacaat 19625866  T
Q  415 tcatctattttctagcctatgtaggttacattagttgcaaattactattcatcgtatttttatatataattcaatatcaatagtttttagatataatcca 514  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||    
T  19625865 tcatctattttctagcctatgtaggttacattagttgcaaattactattcatcgtatttttagatataattcaatatcaatagtttttagatataattca 19625766  T
Q  515 aaatcaatctcaaagaggttt 535  Q
    ||||| |||| ||||||||||    
T  19625765 aaatcgatctaaaagaggttt 19625745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 3215307 - 3215384
Alignment:
Q  162 attccatttttacactttacttaaaaacatcactatgttgaattctcaactcaattcaatcaatacgtagttattttg 239  Q
    |||||||||| |  ||||| || |||| |||| | ||||||||| ||||||||||||||||||||  |||||||||||    
T  3215307 attccattttgatcctttagtttaaaatatcaatttgttgaattgtcaactcaattcaatcaatatatagttattttg 3215384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 140
Target Start/End: Original strand, 36656838 - 36656905
Alignment:
Q  73 attgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtgaatggaac 140  Q
    |||| |||||||||| |  ||||||||||||||| ||||| ||||||||||||||  ||||| |||||    
T  36656838 attgcttggatattttatgacggaatggaactaactttccgctccattgtttggatcgtgaacggaac 36656905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 19848545 - 19848459
Alignment:
Q  54 ggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtgaatggaac 140  Q
    |||| |||| |||||| | |||||||||||| || |  | |||| ||||||| ||||||| ||||||||||||||||| || |||||    
T  19848545 ggaataaagattccattccattgtttggatactttatgatggaacggaactagttttccattccattgtttggaaagttaacggaac 19848459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 4e-24; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 39 - 252
Target Start/End: Complemental strand, 8099811 - 8099598
Alignment:
Q  39 ggaatggaacggagcggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtgaatgga 138  Q
    |||| ||||||||| ||||||||| || ||| | ||||||||||||||  || |||||||| ||||||||| |||||||||||||| |||| |  | |||    
T  8099811 ggaacggaacggagtggaacaaagatttcattccattgtttggatattaaacaacggaatgaaactaatttcccactccattgtttagaaaatagacgga 8099712  T
Q  139 acaaaatgatttataannnnnnnattccatttttacactttac-ttaaaaacatcactatgttgaattctcaactcaattcaatcaatacgtagttattt 237  Q
    ||||||||| ||||||        || ||||||||| |||||| ||||||  |||||||| ||||||||   ||||||||||||||||| ||  ||||||    
T  8099711 acaaaatgagttataattgtttt-tttcatttttaccctttactttaaaagaatcactatattgaattcaacactcaattcaatcaatatgtgattattt 8099613  T
Q  238 tgacattattcataa 252  Q
    ||| ||| |||||||    
T  8099612 tgatatttttcataa 8099598  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 73 - 238
Target Start/End: Complemental strand, 34970904 - 34970739
Alignment:
Q  73 attgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtgaatggaacaaaatgatttataannnnnnnattccattttt 172  Q
    ||||||||||||||| |  |||||||||||||||||| |||||||||||||||||||||| | |||||   | |  |||||        |||||||||||    
T  34970904 attgtttggatattttatgacggaatggaactaatttcccactccattgtttggaaagtggacggaacgggaagtgttataccctttttattccattttt 34970805  T
Q  173 acactttacttaaaaacatcactatgttgaattctcaactcaattcaatcaatacgtagttatttt 238  Q
    || ||||| || |||| |||| | ||||||||| ||||||||||||||||||||  ||||||||||    
T  34970804 accctttagtttaaaatatcaatttgttgaattgtcaactcaattcaatcaatatatagttatttt 34970739  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 28 - 131
Target Start/End: Complemental strand, 15582400 - 15582297
Alignment:
Q  28 tggaacgtaatggaatggaacggagcggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttccactccattgtttgga 127  Q
    ||||||| || ||||||||| ||| ||||| |||  |||||| | |||||||||||| || |  | |||||||||||||||||||| |||||||||||||    
T  15582400 tggaacggaagggaatggaatggaacggaataaaaattccattccattgtttggatactttatgatggaatggaactaattttccattccattgtttgga 15582301  T
Q  128 aagt 131  Q
    ||||    
T  15582300 aagt 15582297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 73 - 140
Target Start/End: Complemental strand, 48047090 - 48047023
Alignment:
Q  73 attgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtgaatggaac 140  Q
    |||||||||| |||| |  || ||||||||||||||| ||||||||||||||||||||||||||||||    
T  48047090 attgtttggaaattttaagacagaatggaactaatttcccactccattgtttggaaagtgaatggaac 48047023  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 8102206 - 8102296
Alignment:
Q  163 ttccatttttacactttacttaaaaaca-tcactatgttgaattctcaactcaattcaatcaatacgtagttattttgacattattcataa 252  Q
    |||||||||||| |||||||| |||| | ||||||||||||||||  ||||||||||||||||||  || ||||||||| ||| |||||||    
T  8102206 ttccatttttaccctttactttaaaagaatcactatgttgaattcataactcaattcaatcaatatataattattttgatatttttcataa 8102296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 41404978 - 41404753
Alignment:
Q  19 ggagcgaagtggaacgtaatggaatggaacggagcggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttccactcca 118  Q
    |||||| | ||||||| || || |||||| ||| ||||| |||| |||||| | | |||||||||| || || |||||||  |  |||||| ||| ||||    
T  41404978 ggagcggaatggaacggaacgggatggaatggaacggaataaagattccattccactgtttggatactttacgacggaatctagttaatttcccattcca 41404879  T
Q  119 ttgtttggaaagtgaatggaacaaaatgatttataannnnnnnattccatttttacactttactt-aaaaacatcactatgttgaattctcaactcaatt 217  Q
    ||||||||||| | || |||||  ||||| ||||||       |||||| |||||| ||||| || |||||  ||| ||  | ||||| |||||||||||    
T  41404878 ttgtttggaaaatcaacggaacggaatgagttataaatattttattccaattttaccctttatttaaaaaatgtcaataaatggaattttcaactcaatt 41404779  T
Q  218 caatcaatacgtagttattttgacat 243  Q
    |||||||||  | |||||||||||||    
T  41404778 caatcaatatttggttattttgacat 41404753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 399
Target Start/End: Original strand, 8103817 - 8103926
Alignment:
Q  290 tagcaccacaaattaagataagaacaaaacatttttaaatttcggttctggcataatttgcaactacagta-tttccatttgtcaggttaaataaaacaa 388  Q
    |||||||||||||||||||||| ||||||| |||| |||||| | |||| |  |||||||||||||  ||| ||||| |||  ||| |||||  ||||||    
T  8103817 tagcaccacaaattaagataagcacaaaactttttaaaattttgattcttg-gtaatttgcaactagtgtattttcccttttgcagcttaaaccaaacaa 8103915  T
Q  389 taataatatag 399  Q
    |||||||||||    
T  8103916 taataatatag 8103926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 8103704 - 8103768
Alignment:
Q  163 ttccatttttacactttacttaaaaaca-tcactatgttgaattctcaactcaattcaatcaata 226  Q
    |||||||||||| |||||||| |||| | ||||||| ||||||||  ||||||||||||||||||    
T  8103704 ttccatttttaccctttactttaaaagaatcactatcttgaattcataactcaattcaatcaata 8103768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 141
Target Start/End: Original strand, 8103588 - 8103691
Alignment:
Q  38 tggaatggaacggagcggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtgaatgg 137  Q
    ||||||| ||||||| ||||||||| ||| ||   ||||||||||||||  || |||||||  ||||||||| |||||||||| |||  ||| || ||||    
T  8103588 tggaatgaaacggagtggaacaaagattctatttcattgtttggatattaaacaacggaataaaactaatttcccactccattatttaaaaaatggatgg 8103687  T
Q  138 aaca 141  Q
    ||||    
T  8103688 aaca 8103691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 132
Target Start/End: Complemental strand, 49765654 - 49765595
Alignment:
Q  73 attgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtg 132  Q
    |||||||| |||||| || | |||||| ||||||||| ||||||||||||||| ||||||    
T  49765654 attgtttgaatattttacgatggaatgaaactaatttcccactccattgtttgaaaagtg 49765595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 290 - 399
Target Start/End: Original strand, 8102319 - 8102428
Alignment:
Q  290 tagcaccacaaattaagataagaacaaaacatttttaaatttcggttctggcataatttgcaactacagta-tttccatttgtcaggttaaataaaacaa 388  Q
    |||||||||||||||||||||| ||||||| |||| |||||| | ||||  | |||||||||||||  ||| ||||| |||  ||| |||||  |||| |    
T  8102319 tagcaccacaaattaagataagcacaaaactttttaaaattttgattct-tcgtaatttgcaactagtgtattttcccttttgcagcttaaaccaaacga 8102417  T
Q  389 taataatatag 399  Q
    |||||||||||    
T  8102418 taataatatag 8102428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 45848718 - 45848772
Alignment:
Q  196 atgttgaattctcaactcaattcaatcaatacgtagttattttgacattattcat 250  Q
    |||||||||||||||||| ||||||||||||  | ||||||||| |||| |||||    
T  45848718 atgttgaattctcaactcgattcaatcaatatatggttattttggcattgttcat 45848772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 355
Target Start/End: Complemental strand, 8099575 - 8099511
Alignment:
Q  290 tagcaccacaaattaagataagaacaaaacatttttaaatttcggttctggcataatttgcaacta 355  Q
    |||||||| ||||||||||||| ||||||| |||| |||||| ||||||  | |||||||||||||    
T  8099575 tagcaccataaattaagataagcacaaaactttttaaaattttggttct-tcgtaatttgcaacta 8099511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 41419063 - 41419014
Alignment:
Q  190 atcactatgttgaattctcaactcaattcaatcaatacgtagttattttg 239  Q
    |||| |||| ||||||||||||||||||||||||||| || | |||||||    
T  41419063 atcaatatgctgaattctcaactcaattcaatcaatatgtggatattttg 41419014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 43492 - 43560
Alignment:
Q  63 gttccatcctattgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagt 131  Q
    ||||||| | ||||||||||||||| || |||||||| |||||||||  || |||||||||||||||||    
T  43492 gttccattccattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagt 43560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 77212 - 77280
Alignment:
Q  63 gttccatcctattgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagt 131  Q
    ||||||| | ||||||||||||||| || |||||||| |||||||||  || |||||||||||||||||    
T  77212 gttccattccattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagt 77280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 73 - 132
Target Start/End: Complemental strand, 38680575 - 38680516
Alignment:
Q  73 attgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtg 132  Q
    ||||||||||||||| || | ||||| |||||||||| ||||||||||| ||||||||||    
T  38680575 attgtttggatattttacgatggaattgaactaatttcccactccattgcttggaaagtg 38680516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 146
Target Start/End: Complemental strand, 29845027 - 29844956
Alignment:
Q  75 tgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtgaatggaacaaaatg 146  Q
    ||||||||||||| |  |||||||||||||||||| ||| |||||||||||  ||||  |||||||| ||||    
T  29845027 tgtttggatatttaatgacggaatggaactaatttcccattccattgtttgagaagtcgatggaacataatg 29844956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 37901 - 37955
Alignment:
Q  76 gtttggatatttcactacggaatggaactaattttccactccattgtttggaaag 130  Q
    ||||||||||||||| | |||| |||  ||| |||||||||||||||||||||||    
T  37901 gtttggatatttcacgatggaacggagttaactttccactccattgtttggaaag 37955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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