View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5855_low_32 (Length: 228)
Name: NF5855_low_32
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5855_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 27769419 - 27769225
Alignment:
| Q |
16 |
atagggtgggttggatatgctnnnnnnncggtggattaaacatgtattttgtgtactttgtttgatttataatctgatcatgggactgaacaaaacaagt |
115 |
Q |
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| T |
27769419 |
atagggtgggttggatatgctaaaaaaacggtggattaaacatgtattttgtgtactttgtttgatttataatctgatcatgggactgaacaaaacaagt |
27769320 |
T |
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| Q |
116 |
agtaaaacatcggacaaaaacagaaatttgcgtcttttactaaaccatgagacaattttttatctaatgtaccgactatcaaaaatcgaattagg |
210 |
Q |
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| T |
27769319 |
agtaaaacaccggacaaaaacagaaatttgtgtcttttattaaaccatgagacaattttttatctaatgtatcgactatcaaaaatcgaattagg |
27769225 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 33969213 - 33969165
Alignment:
| Q |
62 |
ttttgtgtactttgtttgatttataatctgatcatgggactgaacaaaa |
110 |
Q |
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|||| ||||| |||||||||||| || ||||||||||||||| |||||| |
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| T |
33969213 |
ttttttgtacattgtttgatttagaaactgatcatgggactggacaaaa |
33969165 |
T |
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