View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5855_low_33 (Length: 227)
Name: NF5855_low_33
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5855_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 43299773 - 43299981
Alignment:
| Q |
1 |
aacacaatcataaatataagtattcattaaaacaacactaaactatggaaatcaaaccaaacatgaataaagctaagtgatgtaaaagaaaagcaaaagg |
100 |
Q |
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| T |
43299773 |
aacacaatcataaatataagtattcattaaaacaacactaaactatggaaatcaaaccaaacatgaataaagctaagtgatgtaaaagaaaagcaaaaag |
43299872 |
T |
|
| Q |
101 |
agaaaaagttagtacatacagggagatcaggtatgtaatcagacaagtgaggaacatcctcaagcaagaagtcagaaacatgtgtgttggcttcaacatg |
200 |
Q |
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| T |
43299873 |
agaaaaagttagtacatacagggagatcaggtatgtaatcagacaagtgaggaacatcctcaagcaagaagtcagaaacatgtgtgttggcttcaacatg |
43299972 |
T |
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| Q |
201 |
ggaagtgga |
209 |
Q |
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||||||||| |
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| T |
43299973 |
ggaagtgga |
43299981 |
T |
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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 164
Target Start/End: Complemental strand, 34224958 - 34224911
Alignment:
| Q |
117 |
tacagggagatcaggtatgtaatcagacaagtgaggaacatcctcaag |
164 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||| ||||| |
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| T |
34224958 |
tacaggaagatcaggaatgtaatcagacaagtgaggaacatcttcaag |
34224911 |
T |
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