View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5855_low_4 (Length: 533)

Name: NF5855_low_4
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5855_low_4
NF5855_low_4
[»] chr5 (3 HSPs)
chr5 (7-488)||(14274740-14275222)
chr5 (377-476)||(39173529-39173628)
chr5 (357-411)||(10813151-10813205)
[»] chr3 (5 HSPs)
chr3 (9-487)||(51140100-51140576)
chr3 (330-488)||(40927306-40927464)
chr3 (364-411)||(52964156-52964203)
chr3 (364-411)||(54548333-54548380)
chr3 (370-411)||(38475645-38475686)
[»] chr6 (2 HSPs)
chr6 (12-476)||(21729772-21730231)
chr6 (207-476)||(14453346-14453611)
[»] chr1 (6 HSPs)
chr1 (13-311)||(14648297-14648593)
chr1 (327-476)||(14650984-14651130)
chr1 (327-476)||(14660775-14660921)
chr1 (364-411)||(28037673-28037720)
chr1 (357-411)||(33978188-33978242)
chr1 (357-410)||(27643376-27643429)
[»] chr2 (3 HSPs)
chr2 (209-474)||(8323479-8323741)
chr2 (357-414)||(4244400-4244457)
chr2 (331-411)||(36756962-36757042)
[»] scaffold0996 (1 HSPs)
scaffold0996 (330-411)||(1554-1635)
[»] chr4 (3 HSPs)
chr4 (358-411)||(5185486-5185539)
chr4 (354-411)||(38761390-38761447)
chr4 (332-411)||(54421415-54421494)
[»] chr8 (2 HSPs)
chr8 (330-410)||(11629494-11629574)
chr8 (357-410)||(16484161-16484214)
[»] chr7 (2 HSPs)
chr7 (330-409)||(513846-513925)
chr7 (359-411)||(27745736-27745788)


Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 7 - 488
Target Start/End: Complemental strand, 14275222 - 14274740
Alignment:
Q  7 atcagctggtgtgatcaaatgtaatgtagacaccataatattccacaataacatatttggatatggaatgtgcttctggaactttgtgggccacttcttg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||    
T  14275222 atcagctggtgtgatcaaatgtaatgtagacaccataatattccacaataacacattaggatatggaatgtgcttctggaactctgtgggccacttcttg 14275123  T
Q  107 atggggaaatctgcccacctacacacctatatatttgtcctagaagcagaagctatcacatttctt-gaagcaatcaacatggctattttacgatcggtt 205  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||| || ||||| ||||||||||    
T  14275122 atgggaaaatctgcccacctacacacctatatatttgtcctagaagcataagctatcacatttttttgaagcaatcaacacggttatttcacgatcggtt 14275023  T
Q  206 tccacaatgttatatttgaaaaggacaacaagtcgcttgcagaagccataaactcctcttcaaccatccacactgagctcggggacctgatagctcagtg 305  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||| ||||||||||| |||||||||||||||    
T  14275022 tccacaatgttatgtttgaaaaggacaacaagtcgcttgcagaagccataagctcttcttcaacaatccacaatgagctcgggggcctgatagctcagtg 14274923  T
Q  306 taggggtctcttggcaaccaatttcgactttgtagtgttgttcattgggaagcaagcaaatagggttgcacataggatagctagagcatccttatctcat 405  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  14274922 taggggtctcttggcaaccaatttcgactttgtagtgtcgttcattcgaaagcaagcaaatagagttgcacataggatagttagagcatccttatctcat 14274823  T
Q  406 cctagctctcttatctattatattctaccacatgatttgtactctataattattaatgaaatgtattaattttggttttactc 488  Q
    ||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  14274822 cctagttctcatatctattatattgtaccacatgatttgtactctataattattaatgaaatgtattaattttaattttactc 14274740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 377 - 476
Target Start/End: Complemental strand, 39173628 - 39173529
Alignment:
Q  377 ataggatagctagagcatccttatctcatcctagctctcttatctattatattctaccacatgatttgtactctataattattaatgaaatgtattaatt 476  Q
    |||| ||||||| ||||||||||||||||||||||  || ||||| ||||||| | ||||||||| |||||||||||||||||||||||||| |||||||    
T  39173628 atagcatagctaaagcatccttatctcatcctagccttcatatcttttatattgttccacatgatgtgtactctataattattaatgaaatgcattaatt 39173529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 357 - 411
Target Start/End: Complemental strand, 10813205 - 10813151
Alignment:
Q  357 gcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctagc 411  Q
    |||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||    
T  10813205 gcaagctaatagggttgctcatagtatagctagagcttccttatctcatcctagc 10813151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 208; Significance: 1e-113; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 9 - 487
Target Start/End: Complemental strand, 51140576 - 51140100
Alignment:
Q  9 cagctggtgtgatcaaatgtaatgtagacaccataatattccacaataacatatttggatatggaatgtgcttctggaactttgtgggccacttcttgat 108  Q
    ||||||||||||||||||||||||||||| |   |||||||||||| ||||   | |||||  ||||||| ||| | |||| ||||||||||||||||||    
T  51140576 cagctggtgtgatcaaatgtaatgtagacgctgcaatattccacaacaacacgataggatacagaatgtgtttccgaaactctgtgggccacttcttgat 51140477  T
Q  109 ggggaaatctgcccacctacacacctatatatttgtcctagaagcagaagctatcacatttcttgaagcaatcaacatggctattttacgatcggtttcc 208  Q
    |||||||||||||||||| ||| |||   ||||||||||||||||||||||| |  |||| |||| ||||||||||| ||| |||| ||  | |||| ||    
T  51140476 ggggaaatctgcccaccttcactcctcagtatttgtcctagaagcagaagctcttgcattgcttgcagcaatcaacacggccatttcac--ttggttacc 51140379  T
Q  209 acaatgttatatttgaaaaggacaacaagtcgcttgcagaagccataaactcctcttcaaccatccacactgagctcggggacctgatagctcagtgtag 308  Q
    |||||||||| |||||||  |||| ||||| ||||||||| |||||||  || |||||| || |||||| |||||||||||||||| ||| |||||||||    
T  51140378 acaatgttatgtttgaaactgacagcaagttgcttgcagatgccataatttcttcttcatccttccacaatgagctcggggacctgctagttcagtgtag 51140279  T
Q  309 gggtctcttggcaaccaatttcgactttgtagtgttgttcattgggaagcaagcaaatagggttgcacataggatagctagagcatccttatctcatcct 408  Q
    |||||||||||| ||||| ||||||||| |||||| ||| ||| |||||||||| ||||||||||||||||| |||||||||||||||||||  ||||||    
T  51140278 gggtctcttggctaccaacttcgactttatagtgtcgtttattcggaagcaagcgaatagggttgcacatagcatagctagagcatccttatgccatcct 51140179  T
Q  409 agctctcttatctattatattctaccacatgatttgtactctataattattaatgaaatgtattaattttggttttact 487  Q
    ||| | | ||||| ||||||| || || ||||| |||||||||||||||||||||||||| ||||||| || |||||||    
T  51140178 agcccccatatcttttatattgtatcagatgatctgtactctataattattaatgaaatgcattaattctgcttttact 51140100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 330 - 488
Target Start/End: Complemental strand, 40927464 - 40927306
Alignment:
Q  330 cgactttgtagtgttgttcattgggaagcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctagctctcttatctattatatt 429  Q
    |||||||||||||| ||| ||| | | ||||||||||||||||||| |||| ||| ||||||||||||||| |||||||| | | | ||| | |||||||    
T  40927464 cgactttgtagtgtcgtttattcgaaggcaagcaaatagggttgcatatagcataactagagcatccttatgtcatcctatcccccatattttttatatt 40927365  T
Q  430 ctaccacatgatttgtactctataattattaatgaaatgtattaattttggttttactc 488  Q
     ||||| ||||| |||||||||||||||||||||||||| ||||| | || ||||||||    
T  40927364 gtaccagatgatctgtactctataattattaatgaaatgcattaactatgcttttactc 40927306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 411
Target Start/End: Complemental strand, 52964203 - 52964156
Alignment:
Q  364 aatagggttgcacataggatagctagagcatccttatctcatcctagc 411  Q
    ||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  52964203 aatagggttgctcatagtatagctagatcttccttatctcatcctagc 52964156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 411
Target Start/End: Complemental strand, 54548380 - 54548333
Alignment:
Q  364 aatagggttgcacataggatagctagagcatccttatctcatcctagc 411  Q
    ||||| ||||| ||||| ||||||||||| ||||||||||||||||||    
T  54548380 aatagagttgctcatagtatagctagagcttccttatctcatcctagc 54548333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 411
Target Start/End: Original strand, 38475645 - 38475686
Alignment:
Q  370 gttgcacataggatagctagagcatccttatctcatcctagc 411  Q
    ||||||||||| ||| ||||||||||||||||||| ||||||    
T  38475645 gttgcacatagtataactagagcatccttatctcaccctagc 38475686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 148; Significance: 7e-78; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 12 - 476
Target Start/End: Complemental strand, 21730231 - 21729772
Alignment:
Q  12 ctggtgtgatcaaatgtaatgtagacaccataatattccacaataacatatttggatatggaatgtgcttctggaactttgtgggccacttcttgatggg 111  Q
    |||||||||| |||||||||||||||     |||||||||||||||||   | |||||   |||||| |||  ||||| | |||||||||||||||||||    
T  21730231 ctggtgtgataaaatgtaatgtagacgttgcaatattccacaataacacggtaggatacaaaatgtgtttccagaactctttgggccacttcttgatggg 21730132  T
Q  112 gaaatctgcccacctacacacctatatatttgtcctagaagcagaagctatcacatttcttgaagcaatcaacatggctattttacgatcggtttccaca 211  Q
    ||| ||||||||| | ||| |||   |||  |||||||||| |||||||||  |||| |||| ||||||||||| | |||||  ||  | |||| |||||    
T  21730131 gaattctgcccacattcactcctcagtatcagtcctagaagtagaagctattgcattgcttgcagcaatcaacacgactattccac--ttggttaccaca 21730034  T
Q  212 atgttatatttgaaaaggacaacaagtcgcttgcagaagccataaactcctcttcaaccatccacactgagctcggggacctgatagctcagtgtagggg 311  Q
    ||||||| |||||||  ||||||||||| |||||||| ||||||||||  |||||| |  | ||||  ||||| ||||||||| ||| |||| |||||||    
T  21730033 atgttatgtttgaaacagacaacaagtcacttgcagatgccataaactattcttcacctttacacaacgagcttggggacctgctagttcagagtagggg 21729934  T
Q  312 tctcttggcaaccaatttcgactttgtagtgttgttcattgggaagcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctagc 411  Q
     |||||| | ||   ||||||||||||||||| ||||||| ||| |||| |||||| |||||||||||| ||||||| | ||||||||||||||||||||    
T  21729933 cctcttgtctac---tttcgactttgtagtgtcgttcattcggaggcaaccaaataaggttgcacatagcatagctacaacatccttatctcatcctagc 21729837  T
Q  412 tctcttatctattatattctaccacatgatttgtactctataattattaatgaaatgtattaatt 476  Q
     | | ||||| ||||||| ||||||||||| |||||||||||||||||||||||||| |||||||    
T  21729836 ccccatatcttttatattgtaccacatgatgtgtactctataattattaatgaaatgcattaatt 21729772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 207 - 476
Target Start/End: Complemental strand, 14453611 - 14453346
Alignment:
Q  207 ccacaatgttatatttgaaaaggacaacaagtcgcttgcagaagccataaactcctcttcaaccatccacactgagctcggggacctgatagctcagtgt 306  Q
    |||||||||||| |||||||  |||| ||||||||||||||| ||||||||||| ||||||  | ||||||  ||||| ||||||||| ||| |||||||    
T  14453611 ccacaatgttatgtttgaaacagacagcaagtcgcttgcagatgccataaactcttcttcactcttccacaacgagcttggggacctgctagttcagtgt 14453512  T
Q  307 aggggtctcttggcaaccaatttcgactttgtagtgttgttcattgggaagcaagcaaatagggttgcac----ataggatagctagagcatccttatct 402  Q
    ||||  |||||||| ||   ||||||||||||||||||||||||| ||| ||||||||||| ||||||||    |||| |||||||||||||||||||||    
T  14453511 agggccctcttggctac---tttcgactttgtagtgttgttcattcggaggcaagcaaataaggttgcacatatatagtatagctagagcatccttatct 14453415  T
Q  403 catcctagctctcttatctattatattctaccacatgatttgtactctataattattaatgaaatgtattaatt 476  Q
    ||||||||| | | ||||| ||||||| || |||||||| |||||||     ||||||||||||||||||||||    
T  14453414 catcctagcccccatatcttttatattgtaacacatgatgtgtactc-----ttattaatgaaatgtattaatt 14453346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 3e-49; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 13 - 311
Target Start/End: Original strand, 14648297 - 14648593
Alignment:
Q  13 tggtgtgatcaaatgtaatgtagacaccataatattccacaataacatatttggatatggaatgtgcttctggaactttgtgggccacttcttgatgggg 112  Q
    |||||||||||||||||||||||||     |||||||||||||||||   | ||||| |||||||| ||| | || | ||||||||||||||||||||||    
T  14648297 tggtgtgatcaaatgtaatgtagacgttgcaatattccacaataacacggtaggatacggaatgtgtttccgaaaatctgtgggccacttcttgatgggg 14648396  T
Q  113 aaatctgcccacctacacacctatatatttgtcctagaagcagaagctatcacatttcttgaagcaatcaacatggctattttacgatcggtttccacaa 212  Q
    |||||||| ||||| |||  ||   |||  || |||||||||||||||||  |||| |||| ||||||||||| |||||||| ||  | |||| ||||||    
T  14648397 aaatctgcacaccttcacttctcagtatcagtactagaagcagaagctattgcattgcttgcagcaatcaacacggctatttcac--ttggttaccacaa 14648494  T
Q  213 tgttatatttgaaaaggacaacaagtcgcttgcagaagccataaactcctcttcaaccatccacactgagctcggggacctgatagctcagtgtagggg 311  Q
    |||| | |||||||  |||| ||||||||||||||| ||||||||||| |||||| || ||||||  ||||| ||||||||| ||| ||||||||||||    
T  14648495 tgttctgtttgaaacagacagcaagtcgcttgcagatgccataaactcttcttcacccttccacaacgagcttggggacctgctagttcagtgtagggg 14648593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 327 - 476
Target Start/End: Original strand, 14650984 - 14651130
Alignment:
Q  327 tttcgactttgtagtgttgttcattgggaagcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctagctctcttatctattat 426  Q
    ||||||||||||||||| ||||||| ||| ||||||||||| |||||||||||| |||||||||||||   |||||||||||||| | | ||||| ||||    
T  14650984 tttcgactttgtagtgtcgttcattcggaggcaagcaaataaggttgcacatagcatagctagagcat---tatctcatcctagcccccatatcttttat 14651080  T
Q  427 attctaccacatgatttgtactctataattattaatgaaatgtattaatt 476  Q
    ||| ||||||||||| |||||||||||||||||||||||||| |||||||    
T  14651081 attataccacatgatgtgtactctataattattaatgaaatgcattaatt 14651130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 327 - 476
Target Start/End: Original strand, 14660775 - 14660921
Alignment:
Q  327 tttcgactttgtagtgttgttcattgggaagcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctagctctcttatctattat 426  Q
    ||||||||||||||||| ||||||| ||| ||||||||||| |||||||||||| |||||||||||||   |||||||||||||| | | ||||| ||||    
T  14660775 tttcgactttgtagtgtcgttcattcggaggcaagcaaataaggttgcacatagcatagctagagcat---tatctcatcctagcccccatatcttttat 14660871  T
Q  427 attctaccacatgatttgtactctataattattaatgaaatgtattaatt 476  Q
    ||| ||||||||||| |||||||||||||||||||||||||| |||||||    
T  14660872 attataccacatgatgtgtactctataattattaatgaaatgcattaatt 14660921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 411
Target Start/End: Original strand, 28037673 - 28037720
Alignment:
Q  364 aatagggttgcacataggatagctagagcatccttatctcatcctagc 411  Q
    ||||||||||| ||||| ||||||||||| || |||||||||||||||    
T  28037673 aatagggttgctcatagtatagctagagcttctttatctcatcctagc 28037720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 411
Target Start/End: Complemental strand, 33978242 - 33978188
Alignment:
Q  357 gcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctagc 411  Q
    |||||| ||||||||||| ||||| || |||||||| ||||||| ||||||||||    
T  33978242 gcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctagc 33978188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 410
Target Start/End: Complemental strand, 27643429 - 27643376
Alignment:
Q  357 gcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctag 410  Q
    |||||| |||| |||||| ||||| || |||||||||||||||||||| |||||    
T  27643429 gcaagctaataaggttgctcatagtattgctagagcatccttatctcaccctag 27643376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 209 - 474
Target Start/End: Complemental strand, 8323741 - 8323479
Alignment:
Q  209 acaatgttatatttgaaaaggacaacaagtcgcttgcagaagccataaactcctcttcaaccatccacactgagctcggggacctgatagctcagtgtag 308  Q
    |||||||||| |||||||  || | ||||| ||||||||| |||||||| || |||||| |  | ||||  ||||| ||||||||| ||| |||||||||    
T  8323741 acaatgttatgtttgaaacagagagcaagttgcttgcagatgccataaattcttcttcacctttacacaacgagcttggggacctgctagttcagtgtag 8323642  T
Q  309 gggtctcttggcaaccaatttcgactttgtagtgttgttcattgggaagcaagcaaatagggttgcacataggatagctagagcatccttatctcatcct 408  Q
    |||||||||||  ||   ||||||||||||||| | ||||||| | |  ||| ||||||  ||||||||||| ||| |||||||||||||||||||||||    
T  8323641 gggtctcttggttac---tttcgactttgtagtatcgttcattcgaagacaaacaaataaagttgcacatagcataactagagcatccttatctcatcct 8323545  T
Q  409 agctctcttatctattatattctaccacatgatttgtactctataattattaatgaaatgtattaa 474  Q
    | | | | ||||| ||||| | | ||||||||| ||||| |||||||||||||||||||| |||||    
T  8323544 aacccccatatcttttataatgttccacatgatgtgtacgctataattattaatgaaatggattaa 8323479  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 357 - 414
Target Start/End: Original strand, 4244400 - 4244457
Alignment:
Q  357 gcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctagctct 414  Q
    |||||||||||| | ||| ||||| |||||||||||||| ||||||||||||||||||    
T  4244400 gcaagcaaatagagctgctcatagtatagctagagcatctttatctcatcctagctct 4244457  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 411
Target Start/End: Complemental strand, 36757042 - 36756962
Alignment:
Q  331 gactttgtagtgttgttcattgggaagcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctagc 411  Q
    ||||||||||||| ||| ||| ||| |||||| ||||  ||||| ||||| || |||||||| |||||||| |||||||||    
T  36757042 gactttgtagtgtcgtttattcggaggcaagctaataaagttgctcatagtattgctagagcttccttatcacatcctagc 36756962  T

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Target: scaffold0996 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 330 - 411
Target Start/End: Complemental strand, 1635 - 1554
Alignment:
Q  330 cgactttgtagtgttgttcattgggaagcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctagc 411  Q
    |||||||||||||| ||   || ||| |||||| ||||||||||| ||||| || |||||||| ||||||| ||||||||||    
T  1635 cgactttgtagtgtcgtatgttcggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctagc 1554  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 358 - 411
Target Start/End: Complemental strand, 5185539 - 5185486
Alignment:
Q  358 caagcaaatagggttgcacataggatagctagagcatccttatctcatcctagc 411  Q
    ||||| ||||||||||| ||||| ||||||||||| ||||||||||||| ||||    
T  5185539 caagctaatagggttgctcatagtatagctagagcttccttatctcatcttagc 5185486  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 354 - 411
Target Start/End: Complemental strand, 38761447 - 38761390
Alignment:
Q  354 gaagcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctagc 411  Q
    ||||||||| |||| |||||| ||||| || |||||||||||||||||||| ||||||    
T  38761447 gaagcaagctaataaggttgctcatagtattgctagagcatccttatctcaccctagc 38761390  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 411
Target Start/End: Complemental strand, 54421494 - 54421415
Alignment:
Q  332 actttgtagtgttgttcattgggaagcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctagc 411  Q
    |||||||||||| ||| ||| ||| |||||| |||| |||||  ||||| || |||||||| |||||||| |||||||||    
T  54421494 actttgtagtgtcgtttattcggaggcaagctaataaggttggtcatagtattgctagagcttccttatcacatcctagc 54421415  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 11629494 - 11629574
Alignment:
Q  330 cgactttgtagtgttgttcattgggaagcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctag 410  Q
    |||||||||||||| ||   || ||| |||||||||||| ||||| ||||| || ||||||||||| |||||||| |||||    
T  11629494 cgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcatagtattgctagagcatcattatctcaccctag 11629574  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 410
Target Start/End: Complemental strand, 16484214 - 16484161
Alignment:
Q  357 gcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctag 410  Q
    |||||| |||| |||||| ||||| || |||||||||||||||||||| |||||    
T  16484214 gcaagctaataaggttgctcatagtattgctagagcatccttatctcaccctag 16484161  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 409
Target Start/End: Original strand, 513846 - 513925
Alignment:
Q  330 cgactttgtagtgttgttcattgggaagcaagcaaatagggttgcacataggatagctagagcatccttatctcatccta 409  Q
    |||||||||||||| ||   || ||| |||||| ||||||||||| ||||| || |||||||| ||||||| ||||||||    
T  513846 cgactttgtagtgtcgtatgtttggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatccta 513925  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 411
Target Start/End: Complemental strand, 27745788 - 27745736
Alignment:
Q  359 aagcaaatagggttgcacataggatagctagagcatccttatctcatcctagc 411  Q
    |||| |||| |||||| ||||| || |||||||||||||||||||| ||||||    
T  27745788 aagctaataaggttgctcatagtatcgctagagcatccttatctcaccctagc 27745736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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