View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5855_low_5 (Length: 521)
Name: NF5855_low_5
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5855_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 16 - 515
Target Start/End: Complemental strand, 4513129 - 4512630
Alignment:
| Q |
16 |
gttttcacattacctgagtccacgtataagcttcttctgcagtacattctgactgagatgttgggttggaaagagcaagaataataggtttctgcgagca |
115 |
Q |
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| T |
4513129 |
gttttcacattacctgagtccacgtataagcttcttctgcagtacattctgactgagatgttgggttggaaagagcaagaataataggtttctgcgagca |
4513030 |
T |
|
| Q |
116 |
ttaccatatggcgcatggattcagataacataagcatcaaattgcatattgggatgatgaataggttgacaaagtaccttatttaaagaggccatcgctt |
215 |
Q |
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| T |
4513029 |
ttaccatatggcacatggattcagataacataagcatcaaattgcatattgggatgatgaataggttgacaaagtaccttatttaaagaggccatcgctt |
4512930 |
T |
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| Q |
216 |
caacaacatcctgagtaaaagttctcccttgccctgatgttccaatcaacactgttggcttaatttgctgaaaaagaaaacattgaaatgtgaaaaattt |
315 |
Q |
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| T |
4512929 |
caacaacatcctgagtaaaagttctcccttgccctgatgttccaatcaacactgttggcttaatttgctgaaaaagaaaacattgaaatgtgaaaaattt |
4512830 |
T |
|
| Q |
316 |
gaaacttcttttctctccgannnnnnnnnnnnnnnnnnnagtggacgaataggagacagagattgtactttaacagcatctacaagtttctcaacaggtt |
415 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4512829 |
gaaacttcttttctctccgagtgtgtgtgcttgtgtgtgagtggacgaataggagacagagattgtactttaacagcatctacaagtttctcaacaggtt |
4512730 |
T |
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| Q |
416 |
cgtgttcatgagcccatggcttcttgaaatgttgaagtgattctttgcgagaactcacaatcaaaccctgcagagatagaagaattataagaataatcta |
515 |
Q |
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| T |
4512729 |
cgtgttcatgagcccatggcttcttgaaatgttgaagtgattctttgcgagaactcacaatcaaaccctgcagagatagaagaattataagagtaatcta |
4512630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 408 - 455
Target Start/End: Original strand, 43206652 - 43206699
Alignment:
| Q |
408 |
aacaggttcgtgttcatgagcccatggcttcttgaaatgttgaagtga |
455 |
Q |
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| T |
43206652 |
aacaggctcgtgttcatgagcccaaggcttcttgaagtgttgaagtga |
43206699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 24 - 118
Target Start/End: Original strand, 43432279 - 43432373
Alignment:
| Q |
24 |
attacctgagtccacgtataagcttcttctgcagtacattctgactgagatgttgggttggaaagagcaagaataataggtttctgcgagcatta |
118 |
Q |
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| T |
43432279 |
attacctgtgtccacgtataagcttcttcagcagtacattcggactgtgacgttgggttggaaagagaaagaataataggtttctacaagcatta |
43432373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 380 - 484
Target Start/End: Original strand, 43432638 - 43432742
Alignment:
| Q |
380 |
gtactttaacagcatctacaagtttctcaacaggttcgtgttcatgagcccatggcttcttgaaatgttgaagtgattctttgcgagaactcacaatcaa |
479 |
Q |
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|||| ||||||||||| | ||| || | |||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || ||||| |||||||| |
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| T |
43432638 |
gtacattaacagcatcaagaaggtttttaacaggttcgtgttcatgagcccacggcttcttgaaatgttggagtgattctttacgggaactgacaatcaa |
43432737 |
T |
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| Q |
480 |
accct |
484 |
Q |
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|||| |
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| T |
43432738 |
tccct |
43432742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 289
Target Start/End: Original strand, 43432439 - 43432557
Alignment:
| Q |
171 |
gatgaataggttgacaaagtaccttatttaaagaggccatcgcttcaacaacatcctgagtaaaagttctcccttgccctgatgttccaatcaacactgt |
270 |
Q |
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||||| ||| ||||| |||||||| || | |||||||||||| ||||| || || | ||||| | || ||||| || ||||||||||| | |||||| |
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| T |
43432439 |
gatgagtagattgactaagtacctcgttaatagaggccatcgcctcaaccacctctttggtaaacgcacttccttgtcccgatgttccaataagcactgt |
43432538 |
T |
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| Q |
271 |
tggcttaatttgctgaaaa |
289 |
Q |
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| T |
43432539 |
tggcttaattttctgaaaa |
43432557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 248 - 317
Target Start/End: Original strand, 3533733 - 3533801
Alignment:
| Q |
248 |
cctgatgttccaatcaacactgttggcttaatttgctgaaaaagaaaacattgaaatgtgaaaaatttga |
317 |
Q |
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| T |
3533733 |
cctgatattccaatcaacactgttggcttaatttgccg-aaaagaaaacattcaaatatgagaaatttga |
3533801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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