View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5855_low_6 (Length: 518)
Name: NF5855_low_6
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5855_low_6 |
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| [»] scaffold0263 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 10 - 499
Target Start/End: Complemental strand, 42595121 - 42594624
Alignment:
| Q |
10 |
attatacttccattccaagataagccattgattcttaggaaaaaagtacatgataccacaacgattcaactttgatagtccaacaaatttacttaacatt |
109 |
Q |
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| T |
42595121 |
attatacttcaattccaaaataagccattgattcttaggaaaaaagtacatgataccacaacgattcaactttgatagtccaacaaatttacttaacatt |
42595022 |
T |
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| Q |
110 |
acacatacttgggggtttactattattcagtataagcttcaacactaactatccaacatagatgtgttcaatttcataacataacagcatcacagtttac |
209 |
Q |
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| T |
42595021 |
acacatacttggg--tttactattattcagtataagcttcagcactaactatccaacatagatgtgttcaatttcataacataacagcatcaccgtttac |
42594924 |
T |
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| Q |
210 |
ggaaatctaggcattatgaactaataccaaatataacttttcaaatttgaactcacatagatagttacaaattacaatagcatctaactaaaatcctaaa |
309 |
Q |
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| T |
42594923 |
ggaaatctaggcattatgaactaataccaaatataacttttcaaatttgaactcacatagatagttacaaattacaatagcatctaactaaaatcctaaa |
42594824 |
T |
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| Q |
310 |
ccgtacactgac---aatggaagcaagtttaagcaattgcttgctatttcagatatagtttcgttgatatcattcacatagatctctcct---actcaga |
403 |
Q |
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| T |
42594823 |
ccgtacactgtcagaaatggaagcaagtttaagcaattgcttgctatttcagatatagattcgttgatatcattcacatagatctctcctcagactcaga |
42594724 |
T |
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| Q |
404 |
taaatatcaaattataagtagaactggtaattcatattctctataca----aagtctaagttccatctaaacaggtatattctttttaaaaagtatttta |
499 |
Q |
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| T |
42594723 |
taaatatcaaattataagttgaactggtaattcatattctctatacaaattaagtctaagttccatctaaacaggtatattctttttaaaaagtatttta |
42594624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 6e-69; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 22 - 193
Target Start/End: Original strand, 16179498 - 16179666
Alignment:
| Q |
22 |
ttccaagataagccattgattcttaggaaaaaagtacatgataccacaacgattcaactttgatagtccaacaaatttacttaacattacacatacttgg |
121 |
Q |
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| T |
16179498 |
ttccaaaataagccattgattcttaggaaaaaagtacatgataccacaacgattcaactttgataatccaacaaatttacttaacattacacagactt-- |
16179595 |
T |
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| Q |
122 |
gggtttactattattcagtataagcttcaacactaactatccaacatagatgtgttcaatttcataacataa |
193 |
Q |
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| T |
16179596 |
gaatttactattattcagtataagcttcaacactaactatccaacatagatgtgttcaa-ttcataacataa |
16179666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0263 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0263
Description:
Target: scaffold0263; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 309
Target Start/End: Complemental strand, 1722 - 1643
Alignment:
| Q |
231 |
taataccaaatataacttttcaaatttgaactcacatagatagtt-acaaattacaatagcatctaactaaaatcctaaa |
309 |
Q |
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||||||||| |||||| |||||||||||||||| |||||| |||| || ||||||| | |||||||||||| |||||| |
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| T |
1722 |
taataccaattataacatttcaaatttgaactcgcatagacagttcttaatttacaatggtatctaactaaaaccctaaa |
1643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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