View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5855_low_9 (Length: 452)
Name: NF5855_low_9
Description: NF5855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5855_low_9 |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 13 - 434
Target Start/End: Original strand, 44204798 - 44205218
Alignment:
| Q |
13 |
aatattcatatccatggtagacggagcaaacattgcagtgaaagaactaattaatgaacccttaataaaaaagaactaattaatgaaggtttttaatatg |
112 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44204798 |
aatattcatatccatggtagacagagcaaacattgtagtgaaagaactaattaatgaacccttaataaaaaagaactaattaatgaaggtttttaatatg |
44204897 |
T |
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| Q |
113 |
gattttgaggtttctcannnnnnnnaatttcttacctcctttgtccaagttattcaccttttttgtaacaaggaagggattgtttgtgatttatgtattt |
212 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
44204898 |
gattttgaggtttctcaatttttttaatttcttacctcctttgtccaagttattcaccttatt-gtaacaaggaagggattgtttgtgatttatgtattt |
44204996 |
T |
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| Q |
213 |
ggttgcacatatcttaattatacttaacagtttcaaatgaattacacattgaacaattctttgcttgttgcggcagaaacgacatgaagaacttatttga |
312 |
Q |
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| T |
44204997 |
ggttgcacatatcttaattatacttaacagtttcaaatgaattacacattgaacaattctttgcttgttgcggcagaaacgacatgaagaacttatttga |
44205096 |
T |
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| Q |
313 |
cgtttgcagcacaatcacatattatgttcttcaattcatatatattaaatcatttccttgaacttgaccataattgaacttgctctcattctttcaaaca |
412 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44205097 |
cgtttgcagcacaatcacatattctgttcttcaattcatatatattaaatcatttccttgaacttgaccataattgaacttgctctcattctttcaaaca |
44205196 |
T |
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| Q |
413 |
aattactaaccacaacaaagat |
434 |
Q |
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| T |
44205197 |
aattactaaccacaacaaagat |
44205218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 8e-28; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 191 - 281
Target Start/End: Complemental strand, 49870831 - 49870740
Alignment:
| Q |
191 |
attgtttgtgatttatgtatttggttgcacat-atcttaattatacttaacagtttcaaatgaattacacattgaacaattctttgcttgtt |
281 |
Q |
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| T |
49870831 |
attgtttgtgatttatgtatttggttgcacatgaccttaattatactcaacagtttcaaatgaattatacattgaacaattatttccttgtt |
49870740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 356 - 428
Target Start/End: Complemental strand, 49870705 - 49870633
Alignment:
| Q |
356 |
attaaatcatttccttgaacttgaccataattgaacttgctctcattctttcaaacaaattactaaccacaac |
428 |
Q |
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| T |
49870705 |
attaaatcatttccttgaacttgaccataattagatttgctctcattctttcaaacaaattactaaccacaac |
49870633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 290 - 434
Target Start/End: Original strand, 17982473 - 17982613
Alignment:
| Q |
290 |
aacgacatgaagaacttatttgac-gtttgcagcacaatcacatattatgttcttcaattcatatatattaaatcatttccttgaacttgaccataattg |
388 |
Q |
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|||| |||||||||||||||||| |||| | |||||| |||||||| | ||||||||| ||||| ||||||||||||||||||||||||| ||||| |
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| T |
17982473 |
aacggcatgaagaacttatttgaatgttttcggcacaaccacatattcttttcttcaatgcatat----taaatcatttccttgaacttgaccaaaattg |
17982568 |
T |
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| Q |
389 |
aacttgctctcattctttcaaacaaattactaaccacaacaaagat |
434 |
Q |
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| T |
17982569 |
-atttactctcaatctttcaaacaaattactaaccgcaacgaagat |
17982613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 49870922 - 49870851
Alignment:
| Q |
57 |
aactaattaatgaacccttaataaaaaagaactaattaatgaaggtttttaatatggattttgaggtttctca |
129 |
Q |
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| T |
49870922 |
aactaattaatgaacccttatgaaaaaagaactaattaatgaaggttttt-atctggattttgaggtttctca |
49870851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 357 - 434
Target Start/End: Original strand, 20606557 - 20606634
Alignment:
| Q |
357 |
ttaaatcatttccttgaacttgaccataattgaacttgctctcattctttcaaacaaattactaaccacaacaaagat |
434 |
Q |
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|||||| ||||||||||||||| ||| ||||| | || ||||||||||||||||||||||||||||| |||||||||| |
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| T |
20606557 |
ttaaattatttccttgaacttggccaaaattggatttactctcattctttcaaacaaattactaaccgcaacaaagat |
20606634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 357 - 434
Target Start/End: Original strand, 184128 - 184205
Alignment:
| Q |
357 |
ttaaatcatttccttgaacttgaccataattgaacttgctctcattctttcaaacaaattactaaccacaacaaagat |
434 |
Q |
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|||||||||||||||||||||| ||| ||||| | |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
184128 |
ttaaatcatttccttgaacttggccaaaattggatttgctctcattctttcaaacaaattactaaccgcaacaaagat |
184205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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