View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5856-Insertion-1 (Length: 949)
Name: NF5856-Insertion-1
Description: NF5856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5856-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 612; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 173 - 857
Target Start/End: Complemental strand, 9411671 - 9410996
Alignment:
| Q |
173 |
cttgatgtttctctcttgcttctactttcatattcctcttcttatgttctcttgtgtcaaacaacgacagagaccggggtttttaagcgcaataacatgt |
272 |
Q |
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| T |
9411671 |
cttgatgtttctctcttgcttctactttcatattcctcttcttatgttctcttgtgtcaaacaacgacagagaccggggtttttaagcgcaataacatgt |
9411572 |
T |
|
| Q |
273 |
tgcattcgcgatgactggtgttacaaagtactcgatgactgatgttacagagaatcacagttaaatatgactaaatacatagagaaaaatattatcccat |
372 |
Q |
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| T |
9411571 |
tgcattcgcgatgactggtgttacaaagtactcgatgactgatgttacagagaatcacagttaaatatgactaaatacatagagaaaaatattatcccat |
9411472 |
T |
|
| Q |
373 |
tgacattatagattatcccatctagggtgccaaacttattcagatccaccatgaaaggaacatgcacttggtaaagtaaaacaactaacaaattgtatca |
472 |
Q |
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| T |
9411471 |
tgacattatagattatcctatctagggtgccaaacttattcagatccaccatgaaaggaacatgcacttggtaaagtaaaacaactaacaaattgtatca |
9411372 |
T |
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| Q |
473 |
aattaaatttctgtgtgaactttttagactgcaatgaagaaagcagttgtaaatattatgatatgaaatgtacagtttggattcgttgtacatgacacag |
572 |
Q |
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| T |
9411371 |
aattaaatttctgtgtggactttttagactgcaatgaagaaagcagttgtaaatattatgatatgaaatgtacagtttggattcgttgtacatgacacag |
9411272 |
T |
|
| Q |
573 |
tttgatggacattattgaccaaacctctattagaacatttttaatacattccacactataacaggaacatggcatctgatctttgaatacttctgctcag |
672 |
Q |
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| T |
9411271 |
tttgatggacattattgaccaaacctctattagaacatttttaatacattccacactatatcaggaacatggcatctgatctttgaatacttctgctcag |
9411172 |
T |
|
| Q |
673 |
caataaatttaaaattttcatttttcaaaaggaagaaattcaatcttcatttcagaatgagattggtaagggggttgccaggttggagagctcaactggt |
772 |
Q |
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| T |
9411171 |
caataaatttaaaattttcatttttcaaaaggaagaaattcagtcttcatttcagaatgagattggtaaggg--------ggctggggagctcaactggt |
9411080 |
T |
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| Q |
773 |
ttaggtaaggattaagaagtcgaaaggttcagatctcgcagaaaaatcaacgtaacaattaacatattaatatttgtcattcaaa |
857 |
Q |
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| T |
9411079 |
ttaggtaaggattaagaagttg-aaggttcagatctcgcagaaaaaccaacgtaacaattaacatattaatatttatcattcaaa |
9410996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 9411835 - 9411719
Alignment:
| Q |
8 |
attttgttgcatgagtgtttgtagtaatactcttggattctgatttttagattattctttcatagcatagtgaaatcgtggagtatggttttcgccatgc |
107 |
Q |
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| T |
9411835 |
attttgttgcatgagtgtttgtagta-tactcttggattctgatttttagattattctttcatagcatagtgaaatcgtggagtatggttttcgccatgc |
9411737 |
T |
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| Q |
108 |
tattattccaatggatac |
125 |
Q |
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| T |
9411736 |
tattattccaatggatac |
9411719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 812 - 853
Target Start/End: Original strand, 37519587 - 37519628
Alignment:
| Q |
812 |
agaaaaatcaacgtaacaattaacatattaatatttgtcatt |
853 |
Q |
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| T |
37519587 |
agaaaaactaacataacaattaacatattaatatttgtcatt |
37519628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 825 - 870
Target Start/End: Original strand, 32535500 - 32535546
Alignment:
| Q |
825 |
taacaattaacatattaatatttgtcattc-aaagaagaagaaaaaa |
870 |
Q |
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| T |
32535500 |
taacaattaacatattaacatttgtcattcaaaagaagaagaaaaaa |
32535546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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